mRNA_H-paniculata_contig21277.5579.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21277.5579.1
Unique NamemRNA_H-paniculata_contig21277.5579.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig21277.5579.1 vs. uniprot
Match: A0A6H5K175_9PHAE (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K175_9PHAE)

HSP 1 Score: 291 bits (746), Expect = 8.740e-90
Identity = 141/195 (72.31%), Postives = 151/195 (77.44%), Query Frame = 1
Query:    1 IFHESCFKIVDPQSEKEDGDVLRFGEEISLVDDRGMVWNNKDGRLHGRLGPSLFGNGGHMQLKFLKKIDPSSENKEAXXXXXXXXXXXXXXXXTEGIRGSSKEGPAAIKYGDTCELIAKKIRPRREGVIRAPVTHFRRRHQIQLGGYLRSDGKGTTCAFTIHHSPPRISMVSVYSFSADGTVTDTHTHYKIPWNQ 585
            IFHE CFKIVDP SEKEDGDVL FGEEISLVDDRGMVWNNKDGRLHGRLGPSLFGNGGHM+LK      P  E                     +G  G   E  AAI YGD+CE++AKK+RP REGV+RAPVTHFRRRHQIQLGGYLRSDGKG  CAFTIHH+PPR+SMVSVYSFS+DGTV DTHTHYKIPWNQ
Sbjct:  322 IFHECCFKIVDPHSEKEDGDVLHFGEEISLVDDRGMVWNNKDGRLHGRLGPSLFGNGGHMRLKLCNTPKPPPETSRMVRSSSTPASTVQ-----DGGAGREGEDAAAIFYGDSCEMVAKKVRPHREGVVRAPVTHFRRRHQIQLGGYLRSDGKGYACAFTIHHAPPRVSMVSVYSFSSDGTVADTHTHYKIPWNQ 511          
BLAST of mRNA_H-paniculata_contig21277.5579.1 vs. uniprot
Match: D8LFY5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFY5_ECTSI)

HSP 1 Score: 218 bits (555), Expect = 2.370e-65
Identity = 107/161 (66.46%), Postives = 120/161 (74.53%), Query Frame = 1
Query:  124 DGRLHGRLGPSLFGNGGHMQLKFLKKIDPSSENKEAXXXXXXXXXXXXXXXXTEGIRGSSKEGP---AAIKYGDTCELIAKKIRPRREGVIRAPVTHFRRRHQIQLGGYLRSDGKGTTCAFTIHHSPPRISMVSVYSFSADGTVTDTHTHYKIPWNQVKRH 597
            DGRLHGRLGPSLFGNGGHM+LK  K   P  E+                        G+ +EG    AAI YGD+CE++AKK+RP REGV+RAPVTHFRRRHQIQLGGYLRSDGKG  CAFTIHH+PPR+SMVSVYSFSADGTV DTHTHYKIPWNQVK++
Sbjct:  324 DGRLHGRLGPSLFGNGGHMRLKLCKTPKPPPESSRPVRSSPTPASPVQDG-------GAGREGEDAAAAILYGDSCEMVAKKVRPHREGVVRAPVTHFRRRHQIQLGGYLRSDGKGYACAFTIHHAPPRVSMVSVYSFSADGTVADTHTHYKIPWNQVKKY 477          
BLAST of mRNA_H-paniculata_contig21277.5579.1 vs. uniprot
Match: A0A8K1FMY8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FMY8_PYTOL)

HSP 1 Score: 80.1 bits (196), Expect = 5.170e-14
Identity = 52/193 (26.94%), Postives = 88/193 (45.60%), Query Frame = 1
Query:    1 IFHESCFKIVDPQSEKEDGDVLRFGEEISLVDDRGMVWNNKDGRLHGRLGPSLFGNGGHMQLKFLKKIDPSSENKE----AXXXXXXXXXXXXXXXXTEGIRGSSK----------------EGPAAIKYGDTCELIAKKIRPRREGVIRAPVTHFRRRHQIQLGGYLRSDGKGTTCAFTIHHSPPRISMVSV 519
            +F+E  + ++DP + K  GD++ +G+ + LV+  GMVWNNK G + G +GP   G  G M + F +   P S+ ++                     T  I  SS                 +GP  +++GD   ++      R   +    +T+F++     +GGY+  DGKGT   FTI  + PRI  +++
Sbjct:   67 LFYEDEYLVLDPANVKAPGDIVEYGQPVVLVNQHGMVWNNKTGGITGYVGPRQRGIPGEMFVSFRRWSPPLSKKEKRESATTTAPLSGPPGSERDVSTASINSSSSLISSGSSSSVMFDGVTDGP--VRFGDQHVVVTVVESNRHSQMFNKRLTNFKKPTSKIVGGYICCDGKGTELRFTIRPAAPRIEQITM 257          
BLAST of mRNA_H-paniculata_contig21277.5579.1 vs. uniprot
Match: A0A484E928_BRELC (CRAL-TRIO domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E928_BRELC)

HSP 1 Score: 78.6 bits (192), Expect = 1.740e-13
Identity = 51/179 (28.49%), Postives = 81/179 (45.25%), Query Frame = 1
Query:    1 IFHESCFKIVDPQSEKEDGDVLRFGEEISLVDDRGMVWNNKDGRLHGRLGPSLFGNGGHMQLKFLKKIDPSSENKEAXXXXXXXXXXXXXXXXTEGIRGSSKEGPAA------IKYGDTCELIAKKIRPRREGVIRAPVTHFRRRHQIQLGGYLRSDGKGTTCAFTIHHSPPRISMVSV 519
             F E  F ++ P +++ +GD + +G+ + LV+ RGMVWNNK G + G +GP   G  G + + F+K  +     K +                   I GSS     +      I +GDT   I      R   +    +++F++     +GGY+  DGKGT   FTI    P I  +S+
Sbjct:   58 FFTEDAFLVLHPSNQRTEGDKVFYGDALVLVNQRGMVWNNKTGGITGYIGPRPRGVPGEIFVSFIKVPEGVRVTKSSKKEKGDKADRRMSSSSALSISGSSPMSEVSEATTEPICFGDTNVAIEVVESNRHSQMFNKRLSNFKKPTSRIMGGYICCDGKGTELRFTIWPMKPTIEQISM 236          
BLAST of mRNA_H-paniculata_contig21277.5579.1 vs. uniprot
Match: A0A2P4X6Q8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X6Q8_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 7.100e-13
Identity = 50/175 (28.57%), Postives = 80/175 (45.71%), Query Frame = 1
Query:    1 IFHESCFKIVDPQSEKEDGDVLRFGEEISLVDDRGMVWNNKDGRLHGRLGPSLFGNGGHMQLKFLK-KIDPSSENKE-AXXXXXXXXXXXXXXXXTEGIRGSSKEGPAAIKYGDTCELIAKKIRPRREGVIRAPVTHFRRRHQIQLGGYLRSDGKGTTCAFTIHHSPPRISMVSV 519
            +F E  F+++ P  ++ +GD +++GE + LV+  GMVWNNK G + G +GP   G  G M + F K       + KE                  T G    S E    + +GD+   I      R   +    +++F++      GGY+  DGKGT   F I  + P+I  +S+
Sbjct:   59 LFTEDEFQVLHPTGQRSEGDQVQYGEPLVLVNQHGMVWNNKTGGITGYVGPRPRGVAGEMFVCFTKVPAGVGVKKKEKGDKLDKLTASGSTSVLSTSGSTSESSEEMGFVCFGDSNVAITVVESNRHSQMFNKRLSNFKKPTSHIAGGYICCDGKGTELRFAIWPAKPKIEQISM 233          
BLAST of mRNA_H-paniculata_contig21277.5579.1 vs. uniprot
Match: H3GQC8_PHYRM (CRAL-TRIO domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GQC8_PHYRM)

HSP 1 Score: 74.3 bits (181), Expect = 5.030e-12
Identity = 49/183 (26.78%), Postives = 80/183 (43.72%), Query Frame = 1
Query:    1 IFHESCFKIVDPQSEKEDGDVLRFGEEISLVDDRGMVWNNKDGRLHGRLGPSLFGNGGHMQLKFLK----------KIDPSSENKEAXXXXXXXXXXXXXXXXTEGIRGSSKEGPAAIKYGDTCELIAKKIRPRREGVIRAPVTHFRRRHQIQLGGYLRSDGKGTTCAFTIHHSPPRISMVSV 519
            +F E  F ++ P  ++  GD + +GE + LV+  GMVWNNK G + G +GP   G  G M + F K          K +     ++                 +E     ++ GP  + +GD    I      R   +    +++F++      GGY+  DGKGT   FTI  + PR+  +S+
Sbjct:   57 LFTEDEFLVLHPTDQRASGDHVLYGEPLVLVNQHGMVWNNKTGGITGYVGPRPRGVPGEMFVCFTKVPPGVGVKSNKREKHDNKQDKLTPSASTSVLSASGSLSESFESGAEAGP--VCFGDANVAITVMESNRHSQMFNKRLSNFKKPTSHIAGGYICCDGKGTELRFTIWPTKPRVEQISM 237          
BLAST of mRNA_H-paniculata_contig21277.5579.1 vs. uniprot
Match: A0A2D4CF83_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CF83_PYTIN)

HSP 1 Score: 70.5 bits (171), Expect = 6.560e-11
Identity = 59/187 (31.55%), Postives = 100/187 (53.48%), Query Frame = 1
Query:    1 IFHESCFKIVDPQSEKEDGDVLRFGEEISLVDDRGMVWNNKDGRLHGRLGPSLFGNGGHMQLKFLKKIDPSSENKEAXXXXXXXXXXXXXXXXTEGIRGSSKEGP--------------AAIKYGDTCELIAKKIRPRREGVIRAPVTHFRRRHQIQLGGYLRSDGKGTTCAFTIHHSPPRISMVSV 519
            +F+E  + ++DP   +  G+++ +G  + LV+  GMVWNNK G + G +GP      G M + F ++ + ++ +K  XXXXXXXXXXXXXX  T   R +S                  + +++GDT  +I+     R   +    +T+F++     +GGY+  DGKG+   FTI  + P++  +S+
Sbjct:   63 LFNEDEYLVLDPTDRRAPGEMVEYGHTVVLVNQHGMVWNNKTGGITGYIGPRPRNIAGEMFVAF-RRGNSANLSKXXXXXXXXXXXXXXXXSPTALDRENSTASTLSSTSTSNLLEPDGSVVRFGDTDVVISVVESNRHSSMFNKHLTNFKKPTSKIVGGYICCDGKGSVMRFTIFPARPKVEQISM 248          
BLAST of mRNA_H-paniculata_contig21277.5579.1 vs. uniprot
Match: A0A2D4C791_PYTIN (CRAL-TRIO domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C791_PYTIN)

HSP 1 Score: 70.5 bits (171), Expect = 1.070e-10
Identity = 59/187 (31.55%), Postives = 100/187 (53.48%), Query Frame = 1
Query:    1 IFHESCFKIVDPQSEKEDGDVLRFGEEISLVDDRGMVWNNKDGRLHGRLGPSLFGNGGHMQLKFLKKIDPSSENKEAXXXXXXXXXXXXXXXXTEGIRGSSKEGP--------------AAIKYGDTCELIAKKIRPRREGVIRAPVTHFRRRHQIQLGGYLRSDGKGTTCAFTIHHSPPRISMVSV 519
            +F+E  + ++DP   +  G+++ +G  + LV+  GMVWNNK G + G +GP      G M + F ++ + ++ +K  XXXXXXXXXXXXXX  T   R +S                  + +++GDT  +I+     R   +    +T+F++     +GGY+  DGKG+   FTI  + P++  +S+
Sbjct:   63 LFNEDEYLVLDPTDRRAPGEMVEYGHTVVLVNQHGMVWNNKTGGITGYIGPRPRNIAGEMFVAF-RRGNSANLSKXXXXXXXXXXXXXXXXSPTALDRENSTASTLSSTSTSNLLEPDGSVVRFGDTDVVISVVESNRHSSMFNKHLTNFKKPTSKIVGGYICCDGKGSVMRFTIFPARPKVEQISM 248          
BLAST of mRNA_H-paniculata_contig21277.5579.1 vs. uniprot
Match: A0A0P1AQ35_PLAHL (Phosphatidylinositol transfer protein SEC14 and related proteins n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AQ35_PLAHL)

HSP 1 Score: 67.8 bits (164), Expect = 8.850e-10
Identity = 47/181 (25.97%), Postives = 82/181 (45.30%), Query Frame = 1
Query:    1 IFHESCFKIVDPQSEKEDGDVLRFGEEISLVDDRGMVWNNKDGRLHGRLGPSLFGNGGHMQLKFLKKIDP----SSENKEAXXXXXXXXXXXXXXXXTEGIRGSSKEGP----AAIKYGDTCELIAKKIRPRREGVIRAPVTHFRRRHQIQLGGYLRSDGKGTTCAFTIHHSPPRISMVSV 519
            +F E  F ++ P  ++  G+ + +GE + LV+  GMVWNNK G + G +GP   G  G + + F K  +      S  K+                 +   + S  E P    + + +GDT   I      R   +    +++F++     +GGY+  DG+GT   F+I  + P+I  +S+
Sbjct:   58 LFTEDEFLVLHPSDQRSHGENVLYGEPLVLVNQHGMVWNNKTGGITGYVGPRPRGVPGEIFVCFTKVPEGVGVIKSSKKDKVNKVERSTIRASFSASSTSDKLSMSEYPETESSPVYFGDTNVAITVVESNRHSQMFNKRLSNFKKPTSRIVGGYICCDGRGTELRFSIWPTKPKIEQISM 238          
BLAST of mRNA_H-paniculata_contig21277.5579.1 vs. uniprot
Match: W2FT49_PHYPR (CRAL-TRIO domain-containing protein n=14 Tax=Phytophthora TaxID=4783 RepID=W2FT49_PHYPR)

HSP 1 Score: 66.6 bits (161), Expect = 2.230e-9
Identity = 58/180 (32.22%), Postives = 90/180 (50.00%), Query Frame = 1
Query:    1 IFHESCFKIVDPQSEKEDGDVLRFGEEISLVDDRGMVWNNKDGRLHGRLGPSLFGNGGHMQLKFLK---KIDPSSENKEAXXXXXXXXXXXXXXXXTEGIRGSSKEGPAA----IKYGDTCELIAKKIRPRREGVIRAPVTHFRRRHQIQLGGYLRSDGKGTTCAFTIHHSPPRISMVSV 519
            +F E  F ++ P  ++  G+ + +GE + L++  GMVWNNK G + G +GP   G  G M + F K    +  +   K+ XXXXXXXXXXXX    +  +  S  E P      + +GD    I      R   +    +++F++      GGY+  DGKGT   F I  + P+I  +S+
Sbjct:   58 LFTEDEFLVLHPSGQRSQGENVLYGEPLVLINQHGMVWNNKTGGITGYVGPRPRGVPGEMYVCFTKIPAGVGVTKNKKDXXXXXXXXXXXXXTLSASGSL--SMSENPETETGPVCFGDANVAITVVESNRHSQMFNKRLSNFKKPTSKIAGGYICCDGKGTELRFAIWPAKPKIEQISM 235          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21277.5579.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5K175_9PHAE8.740e-9072.31CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
D8LFY5_ECTSI2.370e-6566.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8K1FMY8_PYTOL5.170e-1426.94Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A484E928_BRELC1.740e-1328.49CRAL-TRIO domain-containing protein n=1 Tax=Bremia... [more]
A0A2P4X6Q8_9STRA7.100e-1328.57Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
H3GQC8_PHYRM5.030e-1226.78CRAL-TRIO domain-containing protein n=1 Tax=Phytop... [more]
A0A2D4CF83_PYTIN6.560e-1131.55Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A2D4C791_PYTIN1.070e-1031.55CRAL-TRIO domain-containing protein n=1 Tax=Pythiu... [more]
A0A0P1AQ35_PLAHL8.850e-1025.97Phosphatidylinositol transfer protein SEC14 and re... [more]
W2FT49_PHYPR2.230e-932.22CRAL-TRIO domain-containing protein n=14 Tax=Phyto... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21277contigH-paniculata_contig21277:172..2781 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.9
Seed ortholog evalue9.2e-11
Seed eggNOG ortholog164328.Phyra78992
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p)
EggNOG OGs3Q85J@4776,KOG1471@1,KOG1471@2759
COG Functional cat.I
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons3
Model size597
Cds size597
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21277.5579.1prot_H-paniculata_contig21277.5579.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21277 172..2781 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929569.1081557-CDS-H-paniculata_contig21277:171..3341622929569.1081557-CDS-H-paniculata_contig21277:171..334Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21277 172..334 +
1691480917.6943984-CDS-H-paniculata_contig21277:171..3341691480917.6943984-CDS-H-paniculata_contig21277:171..334Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21277 172..334 +
1622929569.12449-CDS-H-paniculata_contig21277:1793..21401622929569.12449-CDS-H-paniculata_contig21277:1793..2140Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21277 1794..2140 +
1691480917.71197-CDS-H-paniculata_contig21277:1793..21401691480917.71197-CDS-H-paniculata_contig21277:1793..2140Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21277 1794..2140 +
1622929569.1400735-CDS-H-paniculata_contig21277:2694..27811622929569.1400735-CDS-H-paniculata_contig21277:2694..2781Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21277 2695..2781 +
1691480917.7219777-CDS-H-paniculata_contig21277:2694..27811691480917.7219777-CDS-H-paniculata_contig21277:2694..2781Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21277 2695..2781 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21277.5579.1

>prot_H-paniculata_contig21277.5579.1 ID=prot_H-paniculata_contig21277.5579.1|Name=mRNA_H-paniculata_contig21277.5579.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=199bp
IFHESCFKIVDPQSEKEDGDVLRFGEEISLVDDRGMVWNNKDGRLHGRLG
PSLFGNGGHMQLKFLKKIDPSSENKEAASSSSSPEPPTKGGGGTEGIRGS
SKEGPAAIKYGDTCELIAKKIRPRREGVIRAPVTHFRRRHQIQLGGYLRS
DGKGTTCAFTIHHSPPRISMVSVYSFSADGTVTDTHTHYKIPWNQVKRH
back to top

mRNA from alignment at H-paniculata_contig21277:172..2781+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21277.5579.1 ID=mRNA_H-paniculata_contig21277.5579.1|Name=mRNA_H-paniculata_contig21277.5579.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2610bp|location=Sequence derived from alignment at H-paniculata_contig21277:172..2781+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTTTTCACGAATCTTGTTTCAAAATCGTAGACCCCCAGTCGGAAAAAGA GGATGGGGATGTACTCCGATTCGGCGAGGAAATTTCTTTGGTAGATGACC GAGGCATGGTGTGGAACAACAAGGACGGTCGCCTGCACGGCCGACTGGGC CCTTCGTTGTTCGGTGAGTTAGTCAAATCCCCTCTGCGTGTGTTATTGTT GTTATTGCAATCACCATGTAATGTTCCTGTTGTTACAGCAAGTACGTTTT GTTTCGAGTTTTGTACGTGGAAGTAAAGCTTTCACAGGTCGTTAGGAAAA TACGGTGCTATCGTATGGATTCACTTGGTGTTTTTTACTGCAGTATCCAG CTTTAACAATTACTGTGGCTCACCACATGTGACCTGTATGTGTAACAGCG TTGTCAAACCGTCCTGGGAGCATTTTTTTCAAAAATGAAGTGTCTATGTG CGTCGGAAGGAGCACCTCGATCGACAGATTGTGTTTGTGAAAAGCACTTC AGATTTTGGAGAAAATCGGATTTTTTTTTTTTAATCCCCCGAAGGCTGAG GCAAAAATCTTTACCGATGAGTATTTCACCAAAGTAAGAAAATCAGACAT GACATGTGTTTTACCCCGATAGACGTTTTGACAATGCTCTCTCTCTGTGT GTACTCTTTATTATTAGTGGACAACTATGTTTTCTGGAGGTCTTCAATGT TGTTACATTATCATAGACATGTATGCTCTCCATGTTGTGGATCCCAGCCT GACCTGTTCTCGACACGCGTTACCGTCTGTATGAGAACTGTCTGTTTTTA TTGGGTCGTTGTCCAACCCTGTCCGAGCAATGTCATGCTCCTGGGTAGAG TGAGGGTCCCCGCTCTGGCACTTGTCCTCAGTCCAATTCAGTCCAGTCCA ACCCTGTTTCCGAAGGTTAAGCCGAGAAAGCCTTGTTTTGTTCCTTCGCG GGAGCGAGTAGGAGATTAGATACCCTTACTGGCGTCGCCGGTAGGACCGA TATTTTTACAGTCCGCCGTAGTATTCCAATGTTGGAAATACAAAATACTT TGTTCTTTAGTAGTATAATCCACCGAGTTGTGTAAAATTCGATATTTAAT CATATCGCAGTTGTATCGTCATTGGCCAGTGCTGCGTCGGCGGGATCAGT GCTGCGTCAGTATATCCATCAACTATTTGTGTGTTGCTGTACGGTCCCTG CGTCCTCTCCCTTAATTATGACATAGATGTTTACCCTAAACCATGTTATC TCTCTCCCCCCCCCCTCCCCTGCGCTTACGCTTACGCTTACGCTTACGCT TTAAGCCACCTTTGGCTTGAATAGGAAGGTGCCATTGGCCATCCCTATAG GGGCCCACCTATGTTCTTTCGAGGATTCTTCAAGGTTATATTGATATTGG ATCATTCATGCAAAATAGGAGTACAACCATTAGTCCCCCCCCCCACACAC ACACACACACACACACACACACACACACACACACACACTGATTTGAGCGT ACGTCGGAGTTTGAATTGATTATTATTCGCGTGTTTTTTTATTTGTGCTT GTACAATTTTCAAGCCGTATTCCCGTGGCCTGTGTTCCTTGTTATTTTGT CGTCTGACCACCAAACCTCAAGGTAACGGGGGTCACATGCAGCTTAAATT CCTTAAAAAAATAGACCCTTCTTCCGAAAACAAAGAAGCCGCTTCTTCAT CCTCGTCGCCCGAACCACCGACGAAGGGCGGCGGTGGTACGGAGGGGATC AGGGGGTCTTCGAAGGAGGGGCCTGCAGCCATCAAGTACGGCGATACGTG CGAACTCATCGCGAAGAAGATTAGGCCTCGACGCGAGGGCGTGATTCGAG CGCCCGTGACGCATTTTCGGCGGCGACATCAGATCCAACTCGGCGGATAT CTTCGGAGCGATGGCAAGGGGACGACGTGCGCGTTTACGATACACCACTC ACCGCCTCGGATATCAATGGTGCGTGTTTCGATTTCGTTTTTCAGTTCTT TTTTGTTTGCATGCCCCCCGTCTTTTGTTTTTGTGCATGCCCCTTCCCCC CCCCCAACAGCATATTAGCAATCTGTAATTATGCCAAAACGAGCCGAGGA AAAGGAGGGAGGACGTTTTTTTTTGTTTTTTTCATCTTGGATCCTATCCC CTGCGCTATCAATACATATGATGGTACTTGTATTATCATGGAAAGGAATC GCTGCTCGGATGCAATATATGTGTATATATTTATATATAAAAGTTGGAAA ATGCCGCAAAAGTTTACTTCTGGCTCAGGCAGCGTTGCAAGCTAATTTCA CAGTATTGATTTCAGCCTGGAGCTCACTCAAAATTAATGTATATATATAT TCTACATAGATTTTTTTTTTGGGGGGGGGGGGGGGGGGGGAGAGAGAGAA AATAGAAGCATAAAAATAATTCGTGTTTGCATTATTTGACTTTCAGCTTC GTTGGTGTCCCTACTTGCTACCGTGTGTGTATGTGGGTATGTTCTCTGTG TGATGGTCCTACCGCACCTCCAGGTATCCGTATATTCATTTTCCGCGGAT GGGACTGTTACGGATACCCATACACACTACAAGATCCCCTGGAACCAGGT GAAGCGTCAT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig21277:172..2781+

>mRNA_H-paniculata_contig21277.5579.1 ID=mRNA_H-paniculata_contig21277.5579.1|Name=mRNA_H-paniculata_contig21277.5579.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1194bp|location=Sequence derived from alignment at H-paniculata_contig21277:172..2781+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTTTTCACGAATCTTGTTTCAAAATCGTAGACCCCCAGTCGGAAAAAGA
GGATGGGGATGTACTCCGATTCGGCGAGGAAATTTCTTTGGTAGATGACC
GAGGCATGGTGTGGAACAACAAGGACGGTCGCCTGCACGGCCGACTGGGC
CCTTCGTTGTTCGATTTTTCACGAATCTTGTTTCAAAATCGTAGACCCCC
AGTCGGAAAAAGAGGATGGGGATGTACTCCGATTCGGCGAGGAAATTTCT
TTGGTAGATGACCGAGGCATGGTGTGGAACAACAAGGACGGTCGCCTGCA
CGGCCGACTGGGCCCTTCGTTGTTCGGTAACGGGGGTCACATGCAGCTTA
AATTCCTTAAAAAAATAGACCCTTCTTCCGAAAACAAAGAAGCCGCTTCT
TCATCCTCGTCGCCCGAACCACCGACGAAGGGCGGCGGTGGTACGGAGGG
GATCAGGGGGTCTTCGAAGGAGGGGCCTGCAGCCATCAAGTACGGCGATA
CGTGCGAACTCATCGCGAAGAAGATTAGGCCTCGACGCGAGGGCGTGATT
CGAGCGCCCGTGACGCATTTTCGGCGGCGACATCAGATCCAACTCGGCGG
ATATCTTCGGAGCGATGGCAAGGGGACGACGTGCGCGTTTACGATACACC
ACTCACCGCCTCGGATATCAATGGTAACGGGGGTCACATGCAGCTTAAAT
TCCTTAAAAAAATAGACCCTTCTTCCGAAAACAAAGAAGCCGCTTCTTCA
TCCTCGTCGCCCGAACCACCGACGAAGGGCGGCGGTGGTACGGAGGGGAT
CAGGGGGTCTTCGAAGGAGGGGCCTGCAGCCATCAAGTACGGCGATACGT
GCGAACTCATCGCGAAGAAGATTAGGCCTCGACGCGAGGGCGTGATTCGA
GCGCCCGTGACGCATTTTCGGCGGCGACATCAGATCCAACTCGGCGGATA
TCTTCGGAGCGATGGCAAGGGGACGACGTGCGCGTTTACGATACACCACT
CACCGCCTCGGATATCAATGGTATCCGTATATTCATTTTCCGCGGATGGG
ACTGTTACGGATACCCATACACACTACAAGATCCCCTGGAACCAGGTGAA
GCGTCATGTATCCGTATATTCATTTTCCGCGGATGGGACTGTTACGGATA
CCCATACACACTACAAGATCCCCTGGAACCAGGTGAAGCGTCAT
back to top