mRNA_H-paniculata_contig21276.5578.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21276.5578.1
Unique NamemRNA_H-paniculata_contig21276.5578.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig21276.5578.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 1.240e-36
Identity = 70/148 (47.30%), Postives = 95/148 (64.19%), Query Frame = 1 
Query:    1 NGWVAWEALTEKYDSHTKEARRACHEKLINTKMEPGQDPDDFLFVLDGCRDLLEDMGQPVHDERYEDIILQALPAEYERVRIASYEKRDFGLEDIRYMVHTMYVDSLSRPANTTPVAGRGITMQAAGKDSSNVHCNYCRGIGHAIQDC 444
            +G  AW+ L + +D  TKEARRAC  KL +T M+ G+DP DFL  +D  R  LEDMG+ + DE YED++L+AL  EY  +R  S++ R FGL +IR  +  MY+D LSR ++   VAGRG+ M A   +SSNV C  C+  GH   +C
Sbjct:   59 DGAGAWKTLEDSFDGSTKEARRACRYKLFHTTMKSGEDPSDFLAKMDDLRLRLEDMGEKIPDESYEDVLLRALSKEYYFIRQTSHKDRTFGLTEIRTTMVNMYIDELSRKSSGPSVAGRGVAMSA---ESSNVQCRNCQEFGHYANEC 203
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BLAST of mRNA_H-paniculata_contig21276.5578.1 vs. uniprot
Match: A0A6H5JWF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF9_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.360e-17
Identity = 55/148 (37.16%), Postives = 81/148 (54.73%), Query Frame = 1 
Query:   97 MEPGQDPDDFLFVLDGCRDLLEDMGQPVHDERYEDIILQALPAEYERVRIASYEKRDFGLEDIRYMVHTMYVDSLSRPANTTPVAGRGITMQAAGKDSSNVHCNYC----RG-------------IGHAIQDCVILKEKVRRGGPNQS 489
            M  G+DPD F   ++  R   +DM + + DER+ED+ILQA+  +Y+ VR  S+  R FGLE+I+  + +MY+DSLSR   T  VAGRG+ M A+  DS  + C  C    RG             +  A+       +K++R GP +S
Sbjct:    1 MAQGEDPDGFFITVEDVRQRPKDMVEIISDERFEDVILQAISNDYDYVRPTSFRVRHFGLEEIKTTMKSMYIDSLSRTW-TKSVAGRGVAMPASNGDSI-IKCFNCGQFRRGNNRLLLCISDGLVVDAAVSSSTKPDKKIKRLGPIRS 146
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BLAST of mRNA_H-paniculata_contig21276.5578.1 vs. uniprot
Match: A0A6H5KW66_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW66_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 7.260e-15
Identity = 49/157 (31.21%), Postives = 76/157 (48.41%), Query Frame = 1 
Query:    1 NGWVAWEALTEKYDSHTKEARRACHEKLINTKMEPGQDPDDFLFVLDGCRDLLEDMGQPVHDERYEDIILQALPAEYERVRIASYEKRDFGLEDIRYMVHTMYVDSLSRPANTTPVAGRGITMQAAGKDSSNVHCNYCRGIGHAIQDCVILKEKVRR 471
            +G  A++ L   Y+  T E  RA  E+LINT MEP Q+PDD+       R   E MG+ + D  + D  +     EY+ V++  Y   DF ++ ++  +  M++D  SR      +AGRG  M A    S    C  C   GH  ++C   + K ++
Sbjct:   92 DGQAAFQELNLNYNKVTDEVIRATMEELINTPMEPRQNPDDYFNQKHLLRHKAEKMGETISDCYFNDECVTGFTNEYKDVKMIMYRDPDFNVDKMQTTMRHMFLDEQSRNGPKGSIAGRGFAMTAT--TSEEPTCFDCGEKGHIWRNCSEKRGKGKK 246
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BLAST of mRNA_H-paniculata_contig21276.5578.1 vs. uniprot
Match: D7G6Q1_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q1_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 3.380e-13
Identity = 40/132 (30.30%), Postives = 67/132 (50.76%), Query Frame = 1 
Query:   76 EKLINTKMEPGQDPDDFLFVLDGCRDLLEDMGQPVHDERYEDIILQALPAEYERVRIASYEKRDFGLEDIRYMVHTMYVDSLSRPANTTPVAGRGITMQAAGKDSSNVHCNYCRGIGHAIQDCVILKEKVRR 471
            EKL NT MEPGQ+PDD+       R  +E MG+ + D  ++D+ +     EY+ V++  +   +F +  ++  +H M +D  SR  +   +AGRG  M     +     C  C   GH  ++C+  + K R+
Sbjct:    2 EKLDNTSMEPGQNPDDYFNHKHLLRHKVEKMGEKISDRYFKDMCVTGFTHEYKNVKMIMHRDPNFNVNHMQTTMHHMALDEQSRKGSKGGIAGRGFPMVTTASEQET--CFGCGEKGHIRRNCLQRRGKGRQ 131
[Close]
BLAST of mRNA_H-paniculata_contig21276.5578.1 vs. uniprot
Match: A0A6H5KRA6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRA6_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 1.240e-5
Identity = 23/43 (53.49%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    1 NGWVAWEALTEKYDSHTKEARRACHEKLINTKMEPGQDPDDFL 129
            NG  AW AL +++D+ T+EARRACH +L N +  PG DP DF 
Sbjct:  185 NGAEAWNALNDRFDAQTQEARRACHNELFNLRHLPGGDPIDFF 227
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21276.5578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K1J1_9PHAE1.240e-3647.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWF9_9PHAE1.360e-1737.16Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KW66_9PHAE7.260e-1531.21CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G6Q1_ECTSI3.380e-1330.30CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KRA6_9PHAE1.240e-553.49Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21276contigH-paniculata_contig21276:1163..1651 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size489
Cds size489
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929569.0694675-CDS-H-paniculata_contig21276:1162..16511622929569.0694675-CDS-H-paniculata_contig21276:1162..1651Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21276 1163..1651 +
1691480917.6838667-CDS-H-paniculata_contig21276:1162..16511691480917.6838667-CDS-H-paniculata_contig21276:1162..1651Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21276 1163..1651 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21276.5578.1prot_H-paniculata_contig21276.5578.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21276 1163..1651 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21276.5578.1

>prot_H-paniculata_contig21276.5578.1 ID=prot_H-paniculata_contig21276.5578.1|Name=mRNA_H-paniculata_contig21276.5578.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=163bp
NGWVAWEALTEKYDSHTKEARRACHEKLINTKMEPGQDPDDFLFVLDGCR
DLLEDMGQPVHDERYEDIILQALPAEYERVRIASYEKRDFGLEDIRYMVH
TMYVDSLSRPANTTPVAGRGITMQAAGKDSSNVHCNYCRGIGHAIQDCVI
LKEKVRRGGPNQS
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mRNA from alignment at H-paniculata_contig21276:1163..1651+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21276.5578.1 ID=mRNA_H-paniculata_contig21276.5578.1|Name=mRNA_H-paniculata_contig21276.5578.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=489bp|location=Sequence derived from alignment at H-paniculata_contig21276:1163..1651+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGGATGGGTGGCTTGGGAGGCTCTGACGGAAAAGTACGACAGTCACAC
AAAGGAAGCTAGGAGGGCCTGCCACGAAAAGTTGATCAACACGAAGATGG
AGCCCGGCCAAGACCCCGACGACTTCCTTTTTGTCTTGGATGGATGCCGC
GACCTTCTCGAAGACATGGGGCAGCCGGTGCACGACGAGAGGTATGAGGA
CATTATCCTGCAGGCTCTCCCCGCCGAGTACGAGAGGGTTCGCATTGCCA
GCTATGAAAAGCGGGATTTTGGCCTGGAAGACATCCGGTACATGGTCCAC
ACTATGTATGTCGACAGCCTTTCACGTCCTGCGAACACCACGCCCGTCGC
AGGCCGTGGGATCACCATGCAGGCGGCCGGGAAAGACAGCAGCAACGTTC
ACTGCAACTACTGTAGGGGCATCGGACACGCAATACAGGACTGCGTCATC
CTGAAGGAGAAGGTGCGCCGGGGTGGACCTAATCAGTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig21276:1163..1651+

>mRNA_H-paniculata_contig21276.5578.1 ID=mRNA_H-paniculata_contig21276.5578.1|Name=mRNA_H-paniculata_contig21276.5578.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=978bp|location=Sequence derived from alignment at H-paniculata_contig21276:1163..1651+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGGATGGGTGGCTTGGGAGGCTCTGACGGAAAAGTACGACAGTCACAC
AAAGGAAGCTAGGAGGGCCTGCCACGAAAAGTTGATCAACACGAAGATGG
AGCCCGGCCAAGACCCCGACGACTTCCTTTTTGTCTTGGATGGATGCCGC
GACCTTCTCGAAGACATGGGGCAGCCGGTGCACGACGAGAGGTATGAGGA
CATTATCCTGCAGGCTCTCCCCGCCGAGTACGAGAGGGTTCGCATTGCCA
GCTATGAAAAGCGGGATTTTGGCCTGGAAGACATCCGGTACATGGTCCAC
ACTATGTATGTCGACAGCCTTTCACGTCCTGCGAACACCACGCCCGTCGC
AGGCCGTGGGATCACCATGCAGGCGGCCGGGAAAGACAGCAGCAACGTTC
ACTGCAACTACTGTAGGGGCATCGGACACGCAATACAGGACTGCGTCATC
CTGAAGGAGAAGGTGCGCCGGGGTGGACCTAATCAGTCGAACGGATGGGT
GGCTTGGGAGGCTCTGACGGAAAAGTACGACAGTCACACAAAGGAAGCTA
GGAGGGCCTGCCACGAAAAGTTGATCAACACGAAGATGGAGCCCGGCCAA
GACCCCGACGACTTCCTTTTTGTCTTGGATGGATGCCGCGACCTTCTCGA
AGACATGGGGCAGCCGGTGCACGACGAGAGGTATGAGGACATTATCCTGC
AGGCTCTCCCCGCCGAGTACGAGAGGGTTCGCATTGCCAGCTATGAAAAG
CGGGATTTTGGCCTGGAAGACATCCGGTACATGGTCCACACTATGTATGT
CGACAGCCTTTCACGTCCTGCGAACACCACGCCCGTCGCAGGCCGTGGGA
TCACCATGCAGGCGGCCGGGAAAGACAGCAGCAACGTTCACTGCAACTAC
TGTAGGGGCATCGGACACGCAATACAGGACTGCGTCATCCTGAAGGAGAA
GGTGCGCCGGGGTGGACCTAATCAGTCG
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