mRNA_H-paniculata_contig21213.5562.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21213.5562.1
Unique NamemRNA_H-paniculata_contig21213.5562.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig21213.5562.1 vs. uniprot
Match: A0A6H5JPB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB4_9PHAE)

HSP 1 Score: 302 bits (773), Expect = 2.540e-100
Identity = 143/210 (68.10%), Postives = 173/210 (82.38%), Query Frame = 1
Query:    1 QEDYPSASQSEMRQWLKKREDGTNFIYCWPIDGHNFFGQWEGHGNRVKDVHVDDYAGTVINYVTQDGIQGSDARSLAKDGYHFYKSLQQTMLSRELSTYATRSSESRRLLTYMSTSEAPDELFFPTLTQLDERYASRATCDDSRHFSFWVRPGGSWHPEYLTLDHLPMIMKATQFYIRKVEEDQGSKPLLGVLDSLRNGNPIDDSLPVLK 630
            QEDYPSASQ+EMR+WLK ++DGTNFI CWPI+GH+FFGQ E H  RV+DV+VDD+ G V  Y T  G  GS  R   K  Y F+KSLQQTMLSR+L+ YA  SSE+RRLL YM+TS+APDEL+FPTLTQLDERY+S ATC+D+RHFS+W+RPGGSWHPEYLTLDH P++  AT+FYIRKVE+ +GSKPLL  LD LR G+P+D +LP+LK
Sbjct:   14 QEDYPSASQAEMRRWLKDQKDGTNFIKCWPIEGHDFFGQMERHEQRVQDVNVDDFMGGVKEYRTVSGKTGSQERP--KTDYKFFKSLQQTMLSRQLTEYAIHSSEARRLLLYMATSKAPDELYFPTLTQLDERYSSMATCNDTRHFSYWIRPGGSWHPEYLTLDHFPLVYNATEFYIRKVEDARGSKPLLDTLDILRAGHPLDAALPILK 221          
BLAST of mRNA_H-paniculata_contig21213.5562.1 vs. uniprot
Match: D8LSR7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSR7_ECTSI)

HSP 1 Score: 301 bits (771), Expect = 2.100e-98
Identity = 142/210 (67.62%), Postives = 173/210 (82.38%), Query Frame = 1
Query:    1 QEDYPSASQSEMRQWLKKREDGTNFIYCWPIDGHNFFGQWEGHGNRVKDVHVDDYAGTVINYVTQDGIQGSDARSLAKDGYHFYKSLQQTMLSRELSTYATRSSESRRLLTYMSTSEAPDELFFPTLTQLDERYASRATCDDSRHFSFWVRPGGSWHPEYLTLDHLPMIMKATQFYIRKVEEDQGSKPLLGVLDSLRNGNPIDDSLPVLK 630
            +EDYPSASQ+EMR+WLK ++DGTNFI CWPI+GH+FFGQ E H  RV+DV+VDD+ G V  Y T  G  GS  R   K  Y F+KSLQQTMLSR+L+ YA  SSE+RRLL YM+TS+APDEL+FPTLTQLDERY+S ATC+D+RHFS+W+RPGGSWHPEYLTLDH P++  AT+FYIRKVE+ +GSKPLL  LD LR G+P+D +LP+LK
Sbjct:  129 EEDYPSASQAEMRRWLKDQKDGTNFIKCWPIEGHDFFGQMERHEQRVQDVNVDDFMGGVKEYRTMSGNTGSQERP--KTDYKFFKSLQQTMLSRQLTEYAIHSSEARRLLLYMATSKAPDELYFPTLTQLDERYSSMATCNDTRHFSYWIRPGGSWHPEYLTLDHFPLVHNATEFYIRKVEDARGSKPLLDTLDILRAGHPLDATLPILK 336          
BLAST of mRNA_H-paniculata_contig21213.5562.1 vs. uniprot
Match: A0A7S2UWP2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWP2_9STRA)

HSP 1 Score: 197 bits (502), Expect = 7.520e-58
Identity = 97/195 (49.74%), Postives = 135/195 (69.23%), Query Frame = 1
Query:    4 EDYPSASQSEMRQWLKKREDGTNFIYCWPIDGHNFFGQWEGHGNRVKDVHVDDYAGTVINYVTQDGIQGSDARSLAKDGYHFYKSLQQTMLSRELSTYATRSSESRRLLTYMSTSEAPDELFFPTLTQLDERYASRATCDDSRHFSFWVRPGGSWHPEYLTLDHLPMIMKATQFYIRKVEEDQGSKPLLGVLDSL 588
            EDYP A+Q++M + L +   GTNFI CWP++GHNFFGQWE H  RV+++  D + G   +      I+     +L   G  FYKSLQQT+LSRE   Y+  + E+RR+L Y++ S+APDELFFPT  Q +   A++ATCDD+RHFS W+RPGGSWHPEYL L HLP+++K+ +F+ RK+  ++ S PL+  L+ L
Sbjct:  175 EDYPLATQNDMSRLLGEYAPGTNFIKCWPVEGHNFFGQWEHHEKRVEELTFDTFTGEAHDV----HIRREHMPTL---GMKFYKSLQQTVLSREFCEYSCYALEARRILLYLANSKAPDELFFPTALQTNADMAAKATCDDTRHFSHWIRPGGSWHPEYLQLMHLPLLLKSDKFFARKISHNE-SLPLVTALNVL 361          
BLAST of mRNA_H-paniculata_contig21213.5562.1 vs. uniprot
Match: A0A6T5PXW9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5PXW9_HETAK)

HSP 1 Score: 188 bits (478), Expect = 2.810e-54
Identity = 98/206 (47.57%), Postives = 129/206 (62.62%), Query Frame = 1
Query:    4 EDYPSASQSEMRQWLKKREDGT----NFIYCWPIDGHNFFGQWEGHGNRVKDVHVDDYAGTVINYVTQDGIQGSDARSLAKDGYHFYKSLQQTMLSRELSTYATRSSESRRLLTYMSTSEAPDELFFPTLTQLDERYASRATCDDSRHFSFWVRPGGSWHPEYLTLDHLPMIMKATQFYIRKVEEDQGSKPLLGVLDSLRNGNPID 609
            EDYP+  Q +M  WL + E  T    NFI CW I GH+FFGQWE H  RV+ V +D++ G      T+D         L   G  FYKSLQQT L R+   YA    ESRR+L +M+ S+APDE+FFPT+ Q     A  ATCDD+RHFS W+RPGGSWHPEYL ++HL +++ + +F++RK + D  S  LL  LD+LR G  ++
Sbjct:  154 EDYPAMGQGQMSAWLGRHEVETGGPVNFIKCWDILGHDFFGQWEHHERRVEVVTIDNFVGG-----TEDTSYTRPRDDLR--GIKFYKSLQQTTLHRDFVDYAVYGIESRRILLFMANSKAPDEIFFPTVLQTRPDLAETATCDDTRHFSHWIRPGGSWHPEYLRIEHLKLVLDSGKFFLRKTDGD--SAGLLDALDALRGGRALE 350          
BLAST of mRNA_H-paniculata_contig21213.5562.1 vs. uniprot
Match: A0A4D9D7W1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D7W1_9STRA)

HSP 1 Score: 180 bits (456), Expect = 1.720e-50
Identity = 102/215 (47.44%), Postives = 132/215 (61.40%), Query Frame = 1
Query:    1 QEDYPSASQSEMRQWLKKR-EDGTNFIYCWPIDGHNFFGQWEGHGNRVKDVHVDDYAGTVINYVTQDGIQGSDARSLAKDGYHFYKSLQQTMLSRELSTYATRSSESRRLLTYMSTSEAPDELFFPTLTQL--DERYASRATCDDSRHFSFWVRPGGSWHPEYLTLDHLPMIMKAT--------QFYIRKVEEDQGSKPLLGVLDSLRNGNPIDD 612
            QEDYP  S + ++++L       TNFIYCW + GH+FFGQWE H  RV  V VD + G          ++G   RS  K+ Y FYKSLQQT+LSR     A  + ESRRLL Y++TSEAPDE+FFPTL  L  +  +A+RATC+ + HFS W+RPGGSWHPEYLT  HLP++++           F+ RK +  +GS  L+  LD LR   P  D
Sbjct:  177 QEDYPLQSPAAIQEYLAHAVPPATNFIYCWDLRGHDFFGQWEHHEGRVSKVFVDMFDGRSRE------VRGFP-RSPPKE-YTFYKSLQQTVLSRVFVESAVHAPESRRLLLYLATSEAPDEIFFPTLLHLPSNRAHAARATCNSTLHFSHWIRPGGSWHPEYLTPLHLPLLLEKIGASSPSFPAFWARKFDVGKGSSALMAALDYLRECRPARD 383          
BLAST of mRNA_H-paniculata_contig21213.5562.1 vs. uniprot
Match: A0A835YXC2_9STRA (Core-2/I-branching enzyme-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXC2_9STRA)

HSP 1 Score: 174 bits (441), Expect = 6.910e-49
Identity = 93/215 (43.26%), Postives = 129/215 (60.00%), Query Frame = 1
Query:    4 EDYPSASQSEMRQWLKKREDGTNFIYCWPIDGHNFFGQWEGHGNRVKDVHVDDYAGTVINYVTQDGIQGSDARSLAKDGYHFYKSLQQTMLSRELSTYATRSSESRRLLTYMSTSEAPDELFFPTLTQLDERYASRATCDDSRHFSFWVRPGGSWHPEYLTLDHL-------PMIMKATQFYIRKVEEDQGSKPLLGVLDSLRNGNPIDDSLPVL 627
            EDYP+AS  E+R+ L     G N++ CW +  H+FFGQ E HG + + V VDD+AG V  + T         R+L   G+ FYKSLQQ ++SR+   +A  S+++RRLL   ++  APDE+FFPTL Q  + Y S ATCD + H+S W+RPG SWHPEYL L HL       P + +    + RKV+    S  LL V+D+L  G  ++  LPV+
Sbjct:  141 EDYPNASPREIRKALTAMPAGRNYMKCWHLAEHDFFGQIERHGPKARKVVVDDFAGMV--HPTGFSKPADSMRAL---GFQFYKSLQQMVISRDFCRHAVYSADARRLLLVTASLLAPDEVFFPTLLQQSDSYRSTATCDSTLHYSHWIRPGHSWHPEYLDLTHLELLLGGRPWVGRGDVLFFRKVDFGSKSAALLSVIDALNGGKSLESCLPVM 350          
BLAST of mRNA_H-paniculata_contig21213.5562.1 vs. uniprot
Match: A0A7S1U3N2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3N2_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.270e-16
Identity = 41/88 (46.59%), Postives = 50/88 (56.82%), Query Frame = 1
Query:    4 EDYPSASQSEMRQWLKKREDGTNFIYCWPIDGHNFFGQWEGHGNRVKDVHVDDYAGTVINYVTQDGIQGSDARSLAKDGYHFYKSLQQ 267
            EDYP     EM+ WL      TNFI CWPI  HNFFGQ E HG+RV+ +HVDD+AG V +         +D        + FYK+LQQ
Sbjct:  101 EDYPVVGMEEMQAWLGAHPRETNFIKCWPIGRHNFFGQVESHGHRVRQIHVDDFAGDVHDI--------TDVERPKFKEFKFYKALQQ 180          
BLAST of mRNA_H-paniculata_contig21213.5562.1 vs. uniprot
Match: A0A7S1UIP0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UIP0_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.150e-11
Identity = 27/59 (45.76%), Postives = 41/59 (69.49%), Query Frame = 1
Query:  433 HFSFWVRPGGSWHPEYLTLDHLPMIMKATQFYIRKVEEDQGSKPLLGVLDSLRNGNPID 609
            H+++WVRPGGSWHPEYL L HL  ++++   ++RKV+    S+  +  +D+LR G  ID
Sbjct:    5 HYTYWVRPGGSWHPEYLDLRHLYDMLQSDAIFVRKVDIGGASRDFVKAVDALRTGGEID 63          
BLAST of mRNA_H-paniculata_contig21213.5562.1 vs. uniprot
Match: W7UCA6_9STRA (Core-2 i-branching enzyme n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UCA6_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.900e-8
Identity = 29/58 (50.00%), Postives = 37/58 (63.79%), Query Frame = 1
Query:    1 QEDYPSASQSEMRQWLKKR-EDGTNFIYCWPIDGHNFFGQWEGHGNRVKDVHVDDYAG 171
            QEDYP  S + ++++L       TNFIYCW + GH+FFGQWE H  RV  V VD + G
Sbjct:  177 QEDYPLQSPAAIQEYLAHAVPPATNFIYCWDLRGHDFFGQWEHHEGRVSKVFVDMFDG 234          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21213.5562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JPB4_9PHAE2.540e-10068.10Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LSR7_ECTSI2.100e-9867.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2UWP2_9STRA7.520e-5849.74Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6T5PXW9_HETAK2.810e-5447.57Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4D9D7W1_9STRA1.720e-5047.44Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A835YXC2_9STRA6.910e-4943.26Core-2/I-branching enzyme-domain-containing protei... [more]
A0A7S1U3N2_9STRA2.270e-1646.59Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S1UIP0_9STRA2.150e-1145.76Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
W7UCA6_9STRA1.900e-850.00Core-2 i-branching enzyme n=1 Tax=Nannochloropsis ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21213contigH-paniculata_contig21213:3483..4118 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size636
Cds size636
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929565.5065815-CDS-H-paniculata_contig21213:3482..41181622929565.5065815-CDS-H-paniculata_contig21213:3482..4118Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21213 3483..4118 -
1691480916.5131161-CDS-H-paniculata_contig21213:3482..41181691480916.5131161-CDS-H-paniculata_contig21213:3482..4118Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21213 3483..4118 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21213.5562.1prot_H-paniculata_contig21213.5562.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21213 3483..4118 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21213.5562.1

>prot_H-paniculata_contig21213.5562.1 ID=prot_H-paniculata_contig21213.5562.1|Name=mRNA_H-paniculata_contig21213.5562.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=212bp
QEDYPSASQSEMRQWLKKREDGTNFIYCWPIDGHNFFGQWEGHGNRVKDV
HVDDYAGTVINYVTQDGIQGSDARSLAKDGYHFYKSLQQTMLSRELSTYA
TRSSESRRLLTYMSTSEAPDELFFPTLTQLDERYASRATCDDSRHFSFWV
RPGGSWHPEYLTLDHLPMIMKATQFYIRKVEEDQGSKPLLGVLDSLRNGN
PIDDSLPVLKE*
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mRNA from alignment at H-paniculata_contig21213:3483..4118-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21213.5562.1 ID=mRNA_H-paniculata_contig21213.5562.1|Name=mRNA_H-paniculata_contig21213.5562.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=636bp|location=Sequence derived from alignment at H-paniculata_contig21213:3483..4118- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAAGATTACCCTTCAGCGTCGCAAAGCGAAATGCGGCAGTGGCTCAA GAAGAGGGAAGATGGCACCAACTTCATCTACTGCTGGCCCATCGACGGGC ACAACTTCTTCGGCCAGTGGGAGGGGCACGGAAACCGGGTGAAGGACGTA CATGTGGATGACTATGCTGGAACCGTGATTAACTACGTGACTCAGGATGG TATTCAGGGGTCTGACGCTCGGTCTCTCGCTAAGGACGGCTACCATTTTT ACAAGTCCCTGCAGCAGACCATGCTCTCGCGAGAGCTGTCCACGTACGCC ACGCGATCGTCGGAGTCGCGGCGCTTGCTGACTTACATGTCTACGTCCGA AGCGCCCGATGAGCTGTTCTTCCCCACGCTCACACAGCTGGACGAGCGGT ATGCATCTCGGGCAACGTGCGACGACAGCCGGCACTTTTCGTTCTGGGTG CGTCCCGGGGGCAGCTGGCACCCGGAGTACTTGACGCTGGACCACCTGCC TATGATCATGAAGGCGACGCAGTTTTACATCAGGAAAGTGGAGGAAGACC AAGGGTCGAAGCCGCTGTTGGGGGTGCTGGACTCTCTGAGAAATGGGAAC CCCATCGATGACTCGCTGCCTGTGTTGAAAGAGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig21213:3483..4118-

>mRNA_H-paniculata_contig21213.5562.1 ID=mRNA_H-paniculata_contig21213.5562.1|Name=mRNA_H-paniculata_contig21213.5562.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1272bp|location=Sequence derived from alignment at H-paniculata_contig21213:3483..4118- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAAGATTACCCTTCAGCGTCGCAAAGCGAAATGCGGCAGTGGCTCAA
GAAGAGGGAAGATGGCACCAACTTCATCTACTGCTGGCCCATCGACGGGC
ACAACTTCTTCGGCCAGTGGGAGGGGCACGGAAACCGGGTGAAGGACGTA
CATGTGGATGACTATGCTGGAACCGTGATTAACTACGTGACTCAGGATGG
TATTCAGGGGTCTGACGCTCGGTCTCTCGCTAAGGACGGCTACCATTTTT
ACAAGTCCCTGCAGCAGACCATGCTCTCGCGAGAGCTGTCCACGTACGCC
ACGCGATCGTCGGAGTCGCGGCGCTTGCTGACTTACATGTCTACGTCCGA
AGCGCCCGATGAGCTGTTCTTCCCCACGCTCACACAGCTGGACGAGCGGT
ATGCATCTCGGGCAACGTGCGACGACAGCCGGCACTTTTCGTTCTGGGTG
CGTCCCGGGGGCAGCTGGCACCCGGAGTACTTGACGCTGGACCACCTGCC
TATGATCATGAAGGCGACGCAGTTTTACATCAGGAAAGTGGAGGAAGACC
AAGGGTCGAAGCCGCTGTTGGGGGTGCTGGACTCTCTGAGAAATGGGAAC
CCCATCGATGACTCGCTGCCTGTGTTGAAAGAGTGACAGGAAGATTACCC
TTCAGCGTCGCAAAGCGAAATGCGGCAGTGGCTCAAGAAGAGGGAAGATG
GCACCAACTTCATCTACTGCTGGCCCATCGACGGGCACAACTTCTTCGGC
CAGTGGGAGGGGCACGGAAACCGGGTGAAGGACGTACATGTGGATGACTA
TGCTGGAACCGTGATTAACTACGTGACTCAGGATGGTATTCAGGGGTCTG
ACGCTCGGTCTCTCGCTAAGGACGGCTACCATTTTTACAAGTCCCTGCAG
CAGACCATGCTCTCGCGAGAGCTGTCCACGTACGCCACGCGATCGTCGGA
GTCGCGGCGCTTGCTGACTTACATGTCTACGTCCGAAGCGCCCGATGAGC
TGTTCTTCCCCACGCTCACACAGCTGGACGAGCGGTATGCATCTCGGGCA
ACGTGCGACGACAGCCGGCACTTTTCGTTCTGGGTGCGTCCCGGGGGCAG
CTGGCACCCGGAGTACTTGACGCTGGACCACCTGCCTATGATCATGAAGG
CGACGCAGTTTTACATCAGGAAAGTGGAGGAAGACCAAGGGTCGAAGCCG
CTGTTGGGGGTGCTGGACTCTCTGAGAAATGGGAACCCCATCGATGACTC
GCTGCCTGTGTTGAAAGAGTGA
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