mRNA_H-paniculata_contig2120.5558.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2120.5558.1 vs. uniprot
Match: D7G9D4_ECTSI (Spherulin 4 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9D4_ECTSI) HSP 1 Score: 417 bits (1071), Expect = 4.120e-131 Identity = 239/456 (52.41%), Postives = 294/456 (64.47%), Query Frame = 1
Query: 1 QLLCYVATTYGEKSLEQVEAEIIDYEKLYPNACDGIFFDEAPFLLDGLLHIYSQHNNFAHKALDVTDSVARVVFNTGQTPDEQYYSFDPPAEVVVMENYFKTVRQLGLRETSLISSPEQNMILLHSATELAENPQLIPAFMKKAYCKGYGTMYVTDDLF-EVNPWDDPPSFLGYMLDAARSIPSVEECQADGLKVLVPLLGSDPIDIQTIIDTTDPGDYGDLITVAMDVKITESGASTTAAAAVRDAGAKVLCYIDAT--GNADLKGLEAAVETFTYFPLNEICAGFFFGGFSITRALEDVFSLQSLYAKTQKTFLQATVVLAPSVVDTPDPFGSSXXXXXXXXXXXXXXXXXXXXXEMDAGDTNLDFVAFDEDDWEEASS--ILSEFYLPWQEVMDTEDVTKLAESLTLGLADGATEGDIIIASSVDPMASIPTAICPTKNSAALVTGYSGAPQD 1353
++LCYVATTYG K+ VE EI Y+ S ARVVFNTGQ DEQY+SF PPAEV+ ENYFK VRQLG+ ETS IS+P QNM+LLHSATELAE P+LI F+ KAYCKG+GT+YVTDDLF E NPWD+PP+F ++A+R+IP+VE C GLK++ PLLG+D D + I+ T DPGDYGD I VAM+V+ITE+G ST AAAVRDAGAKVLCYI+A GN DL LE VET+T+FPLNEIC GFFFG F+I A+ED+ +QSLY KTQKTFLQ TVV AP V D D F SS + DFV DEDDW ++ + F LPW++VM D+ LAESLT+GL DGAT G+I++A ++D + IP A P +++AALVTGY+GAP++
Sbjct: 95 KMLCYVATTYGNKTTGSVEEEITAYQ-----------------------------------------SEARVVFNTGQAADEQYFSFSPPAEVLGYENYFKAVRQLGVPETSDISTPPQNMLLLHSATELAEKPELIQPFVDKAYCKGWGTVYVTDDLFDEGNPWDNPPTFWTAFIEASRNIPTVESCGDGGLKIIAPLLGNDDADTEAIMATADPGDYGDRIMVAMNVEITETGESTDRAAAVRDAGAKVLCYIEADKYGN-DLATLEEVVETYTFFPLNEICGGFFFGAFNILLAIEDMPGMQSLYLKTQKTFLQPTVVFAPEVQDYSDGFESSYSF-------------------------SYDFVEVDEDDWYSTNNWDSTTNFELPWEDVMTETDLVALAESLTVGLGDGATAGEIVVAEAIDGGSVIPEAPEPNESTAALVTGYAGAPEN 483
BLAST of mRNA_H-paniculata_contig2120.5558.1 vs. uniprot
Match: D8LFB3_ECTSI (Mannuronan C-5 epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFB3_ECTSI) HSP 1 Score: 120 bits (300), Expect = 5.470e-24 Identity = 95/357 (26.61%), Postives = 173/357 (48.46%), Query Frame = 1
Query: 4 LLCYVATTYGEKSLEQVEAEIIDYEKLYPNACDGIFFDEAPFLLD-------GLLHIYSQHNNFA-HKALDVT-------DSVARVVFNTGQTPDEQYYSFDPPAEVVVMENYFKTVRQLGLRET-SLISSPEQNMILLHSAT-----ELAENPQLIPAFMKKAYCKGYGTMYVTDDLFEV------NPWDDPPSFLGYMLDAARSIPSVE--ECQADGLKVLVPL-LGSDPI-----DIQTIIDTTDPGDYGDLITVAMDVKITESGASTTAAAAVRDAGAKVLCYIDA---TGNADLKGLEAAVETFTYFPLNEICAGFFFGGFS-ITRALEDVFSLQSLYAKTQKTFLQATVVL 957
++CYV+T YG++S ++V A+I YE +P CDGIFFDEAP + +Y ++NN+ K T D V FN G D Y++F V+ EN+++ ++ +G+ T S + P Q+ + +H+ + E L+ A +++A C G+G +Y+T D + NPW+ ++ +++A ++ P++ C + ++VP+ L + + D+ ++ ++ + G +TV +D + + + A +RDAGA+VLCY D T DL G + + F E+C G + +S T + E ++ LY Q + +V+
Sbjct: 94 MICYVSTDYGDRSEDEVNADIDQYETNFPGVCDGIFFDEAPADITDEGGNPTATGDLYERYNNYVVEKEFPDTEDPDLLQDRSWTVTFNPGGGVDPAYFAFSGNPTVMSYENFYRVMKNVGMPRTPSSVLDPSQHALAVHTTSPDLDGNTEETRALVEAIVQEAACSGWGKIYLTSDSQDPGSDDGGNPWNVLTNYWDTLVEAVKAYPTLPPPSCSGPEMALMVPVWLAGEALEDAVDDVLGVVTKSNFLEGG--VTVVLDAR--DGDGTNPTATQLRDAGARVLCYFDFNSYTDVYDLIGELTSADPPAAFA-TEVCGGLYVDNYSEFTLSAEQ--NIYDLYITVQNVIPRGMLVI 443
BLAST of mRNA_H-paniculata_contig2120.5558.1 vs. uniprot
Match: UPI001F550125 (spherulation-specific family 4 protein n=1 Tax=unclassified Planktothricoides TaxID=2621081 RepID=UPI001F550125) HSP 1 Score: 65.9 bits (159), Expect = 1.440e-8 Identity = 49/180 (27.22%), Postives = 84/180 (46.67%), Query Frame = 1
Query: 13 YVATTYGEKSLEQVEAEIIDYEKLYPNACDGIFFDEAPFLLDGLLHIYSQHNNFAHKALDVTDSVARVVFNTGQTPDEQYYSFDPPAEVVVMENYFKTVRQLGLRETSLISSPEQNMILLHSATELAENPQLIPAFMKKAYCKGYGTMYVTDDL---FEVNPWDDPPSFLGYMLDAARSI 543
YVATTYG++ LE+V+ EI Y++ Y + DGIF DEA D L + ++ + ++ VV N G DE Y + ++ ENY + R ++ L+H+ + A + + +A + G +Y+TDD + NPW+ PS+ ++ +S+
Sbjct: 3 YVATTYGDRPLEEVKTEIDLYDRHY--SIDGIFLDEAASGSDKL-----DYYQEIYRYIKAKQNLNMVVLNQGTQTDEGYLNRPAGDISIIFENYSSAWPEYESRPYMNNYPGDRFSCLIHTVPDTAT----MKGHIDRAIQRNIGYIYITDDSPDSVDRNPWNSLPSYWQEQVNYIQSL 171
BLAST of mRNA_H-paniculata_contig2120.5558.1 vs. uniprot
Match: A0A0M1JN99_9CYAN (Spherulation-specific family 4 n=3 Tax=Planktothricoides TaxID=132607 RepID=A0A0M1JN99_9CYAN) HSP 1 Score: 67.0 bits (162), Expect = 2.570e-8 Identity = 50/183 (27.32%), Postives = 86/183 (46.99%), Query Frame = 1
Query: 4 LLCYVATTYGEKSLEQVEAEIIDYEKLYPNACDGIFFDEAPFLLDGLLHIYSQHNNFAHKALDVTDSVARVVFNTGQTPDEQYYSFDPPAEVVVMENYFKTVRQLGLRETSLISSPEQNMILLHSATELAENPQLIPAFMKKAYCKGYGTMYVTDDL---FEVNPWDDPPSFLGYMLDAARSI 543
+L YVATTYG++ LE+V+ EI Y++ Y + DGIF DEA D L + ++ + ++ VV N G DE Y + ++ ENY + R ++ L+H+ + A + + +A + G +Y+TDD + NPW+ PS+ ++ +S+
Sbjct: 85 ILGYVATTYGDRPLEEVKTEIDLYDRHY--SIDGIFLDEAASGSDKL-----DYYQEIYRYIKAKQNLNMVVLNQGTQTDEGYLNRPAGDISIIFENYSSAWPEYESRPYMNNYPGDRFSCLIHTVPDTAT----MKGHIDRAIQRNIGYIYITDDSPDSVDRNPWNSLPSYWQEQVNYIQSL 256 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2120.5558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2120.5558.1 >prot_H-paniculata_contig2120.5558.1 ID=prot_H-paniculata_contig2120.5558.1|Name=mRNA_H-paniculata_contig2120.5558.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=405bp MENYFKTVRQLGLRETSLISSPEQNMILLHSATELAENPQLIPAFMKKAYback to top mRNA from alignment at H-paniculata_contig2120:9854..22579- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2120.5558.1 ID=mRNA_H-paniculata_contig2120.5558.1|Name=mRNA_H-paniculata_contig2120.5558.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=12726bp|location=Sequence derived from alignment at H-paniculata_contig2120:9854..22579- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2120:9854..22579- >mRNA_H-paniculata_contig2120.5558.1 ID=mRNA_H-paniculata_contig2120.5558.1|Name=mRNA_H-paniculata_contig2120.5558.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2430bp|location=Sequence derived from alignment at H-paniculata_contig2120:9854..22579- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |