mRNA_H-paniculata_contig2120.5557.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2120.5557.1
Unique NamemRNA_H-paniculata_contig2120.5557.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2120.5557.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2120contigH-paniculata_contig2120:8035..8423 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size389
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2120.5557.1prot_H-paniculata_contig2120.5557.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2120 8044..8421 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929564.7396128-UTR-H-paniculata_contig2120:8034..80431622929564.7396128-UTR-H-paniculata_contig2120:8034..8043Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2120 8035..8043 +
1691480916.243839-UTR-H-paniculata_contig2120:8034..80431691480916.243839-UTR-H-paniculata_contig2120:8034..8043Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2120 8035..8043 +
1622929564.7764475-UTR-H-paniculata_contig2120:8421..84231622929564.7764475-UTR-H-paniculata_contig2120:8421..8423Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2120 8422..8423 +
1691480916.2647035-UTR-H-paniculata_contig2120:8421..84231691480916.2647035-UTR-H-paniculata_contig2120:8421..8423Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2120 8422..8423 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929564.7604103-CDS-H-paniculata_contig2120:8043..84211622929564.7604103-CDS-H-paniculata_contig2120:8043..8421Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2120 8044..8421 +
1691480916.2524724-CDS-H-paniculata_contig2120:8043..84211691480916.2524724-CDS-H-paniculata_contig2120:8043..8421Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2120 8044..8421 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2120.5557.1

>prot_H-paniculata_contig2120.5557.1 ID=prot_H-paniculata_contig2120.5557.1|Name=mRNA_H-paniculata_contig2120.5557.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
MVNVVHKKYRHEGRPSILSYDMAGSGEREFCAQHARAGMIKTKSTKCIYE
GCSYYQVHRTTVSWKRDFCAQHAIAGMINVKIKQYGIDACFRSLAYGVKG
RGKAMFCRQHVSRAAGALLLQQSVR*
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mRNA from alignment at H-paniculata_contig2120:8035..8423+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2120.5557.1 ID=mRNA_H-paniculata_contig2120.5557.1|Name=mRNA_H-paniculata_contig2120.5557.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=389bp|location=Sequence derived from alignment at H-paniculata_contig2120:8035..8423+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGTAGGAATGGTGAATGTGGTGCATAAGAAGTACCGCCACGAGGGCCG
TCCTTCGATACTGTCATACGATATGGCAGGGAGCGGAGAGCGGGAATTCT
GCGCCCAGCATGCCAGGGCAGGAATGATCAAAACCAAGAGCACGAAATGC
ATATATGAGGGATGTTCCTACTATCAGGTACACCGTACGACGGTGTCTTG
GAAGAGGGATTTCTGCGCCCAGCATGCCATTGCAGGAATGATCAATGTTA
AGATCAAACAGTATGGTATCGATGCGTGCTTTAGGAGTCTTGCATATGGC
GTGAAAGGTCGCGGCAAGGCGATGTTTTGTCGCCAGCATGTGTCGCGAGC
GGCTGGCGCTCTATTGCTGCAGCAGAGCGTGCGGTAGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig2120:8035..8423+

>mRNA_H-paniculata_contig2120.5557.1 ID=mRNA_H-paniculata_contig2120.5557.1|Name=mRNA_H-paniculata_contig2120.5557.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig2120:8035..8423+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGAATGTGGTGCATAAGAAGTACCGCCACGAGGGCCGTCCTTCGAT
ACTGTCATACGATATGGCAGGGAGCGGAGAGCGGGAATTCTGCGCCCAGC
ATGCCAGGGCAGGAATGATCAAAACCAAGAGCACGAAATGCATATATGAG
GGATGTTCCTACTATCAGGTACACCGTACGACGGTGTCTTGGAAGAGGGA
TTTCTGCGCCCAGCATGCCATTGCAGGAATGATCAATGTTAAGATCAAAC
AGTATGGTATCGATGCGTGCTTTAGGAGTCTTGCATATGGCGTGAAAGGT
CGCGGCAAGGCGATGTTTTGTCGCCAGCATGTGTCGCGAGCGGCTGGCGC
TCTATTGCTGCAGCAGAGCGTGCGGTAGATGGTGAATGTGGTGCATAAGA
AGTACCGCCACGAGGGCCGTCCTTCGATACTGTCATACGATATGGCAGGG
AGCGGAGAGCGGGAATTCTGCGCCCAGCATGCCAGGGCAGGAATGATCAA
AACCAAGAGCACGAAATGCATATATGAGGGATGTTCCTACTATCAGGTAC
ACCGTACGACGGTGTCTTGGAAGAGGGATTTCTGCGCCCAGCATGCCATT
GCAGGAATGATCAATGTTAAGATCAAACAGTATGGTATCGATGCGTGCTT
TAGGAGTCTTGCATATGGCGTGAAAGGTCGCGGCAAGGCGATGTTTTGTC
GCCAGCATGTGTCGCGAGCGGCTGGCGCTCTATTGCTGCAGCAGAGCGTG
CGGTAG
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