mRNA_H-paniculata_contig212.5556.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig212.5556.1
Unique NamemRNA_H-paniculata_contig212.5556.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig212.5556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig212contigH-paniculata_contig212:37004..37519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size516
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig212.5556.1prot_H-paniculata_contig212.5556.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig212 37088..37483 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929563.9083536-UTR-H-paniculata_contig212:37003..370871622929563.9083536-UTR-H-paniculata_contig212:37003..37087Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig212 37004..37087 +
1691480915.8136594-UTR-H-paniculata_contig212:37003..370871691480915.8136594-UTR-H-paniculata_contig212:37003..37087Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig212 37004..37087 +
1622929563.9391055-UTR-H-paniculata_contig212:37483..375191622929563.9391055-UTR-H-paniculata_contig212:37483..37519Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig212 37484..37519 +
1691480915.8351233-UTR-H-paniculata_contig212:37483..375191691480915.8351233-UTR-H-paniculata_contig212:37483..37519Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig212 37484..37519 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929563.9202907-CDS-H-paniculata_contig212:37087..374831622929563.9202907-CDS-H-paniculata_contig212:37087..37483Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig212 37088..37483 +
1691480915.8250055-CDS-H-paniculata_contig212:37087..374831691480915.8250055-CDS-H-paniculata_contig212:37087..37483Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig212 37088..37483 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig212.5556.1

>prot_H-paniculata_contig212.5556.1 ID=prot_H-paniculata_contig212.5556.1|Name=mRNA_H-paniculata_contig212.5556.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
MFQHHLDPPLLVPKVDQLTCSNREAYRDPSPSQHFAHSTTTNGYLPSSKN
SETSLLTVPHIYTSTTCNDRIRCALRPQYVRCNRSACWCNRDFAGTPTLK
ELRRNTTTAKTTKVKPSARRFSPLADDSSQA*
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mRNA from alignment at H-paniculata_contig212:37004..37519+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig212.5556.1 ID=mRNA_H-paniculata_contig212.5556.1|Name=mRNA_H-paniculata_contig212.5556.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=516bp|location=Sequence derived from alignment at H-paniculata_contig212:37004..37519+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTACGCTTTTATGATGTGTCTGAATACAATCCGCGCATAAAAATGTGTTA
GGTGTCTTCTCATAGTAGACATACATCTTCACACATGTTTCAACATCACT
TAGATCCGCCGCTGCTCGTACCCAAAGTTGACCAGCTTACATGCTCGAAC
CGAGAAGCCTACCGCGATCCTTCACCGTCGCAACATTTTGCACACAGCAC
AACTACAAATGGATACCTCCCCTCTTCAAAGAATTCAGAAACCTCTCTCC
TAACGGTGCCACATATCTACACGAGTACCACGTGTAACGACCGCATACGG
TGTGCGTTGCGTCCGCAATATGTGCGATGCAATCGCAGCGCGTGTTGGTG
TAACCGCGACTTTGCTGGAACCCCCACCCTCAAAGAGCTGAGAAGAAATA
CCACCACGGCCAAGACGACAAAGGTGAAGCCAAGTGCGAGACGTTTTTCA
CCACTTGCCGACGACAGCAGCCAAGCTTAGCTCTCGTCGTCACCATGCTC
CTCCTCTTTCTCTTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig212:37004..37519+

>mRNA_H-paniculata_contig212.5556.1 ID=mRNA_H-paniculata_contig212.5556.1|Name=mRNA_H-paniculata_contig212.5556.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig212:37004..37519+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTCAACATCACTTAGATCCGCCGCTGCTCGTACCCAAAGTTGACCA
GCTTACATGCTCGAACCGAGAAGCCTACCGCGATCCTTCACCGTCGCAAC
ATTTTGCACACAGCACAACTACAAATGGATACCTCCCCTCTTCAAAGAAT
TCAGAAACCTCTCTCCTAACGGTGCCACATATCTACACGAGTACCACGTG
TAACGACCGCATACGGTGTGCGTTGCGTCCGCAATATGTGCGATGCAATC
GCAGCGCGTGTTGGTGTAACCGCGACTTTGCTGGAACCCCCACCCTCAAA
GAGCTGAGAAGAAATACCACCACGGCCAAGACGACAAAGGTGAAGCCAAG
TGCGAGACGTTTTTCACCACTTGCCGACGACAGCAGCCAAGCTTAGATGT
TTCAACATCACTTAGATCCGCCGCTGCTCGTACCCAAAGTTGACCAGCTT
ACATGCTCGAACCGAGAAGCCTACCGCGATCCTTCACCGTCGCAACATTT
TGCACACAGCACAACTACAAATGGATACCTCCCCTCTTCAAAGAATTCAG
AAACCTCTCTCCTAACGGTGCCACATATCTACACGAGTACCACGTGTAAC
GACCGCATACGGTGTGCGTTGCGTCCGCAATATGTGCGATGCAATCGCAG
CGCGTGTTGGTGTAACCGCGACTTTGCTGGAACCCCCACCCTCAAAGAGC
TGAGAAGAAATACCACCACGGCCAAGACGACAAAGGTGAAGCCAAGTGCG
AGACGTTTTTCACCACTTGCCGACGACAGCAGCCAAGCTTAG
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