mRNA_H-paniculata_contig212.5553.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig212.5553.1
Unique NamemRNA_H-paniculata_contig212.5553.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig212.5553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig212contigH-paniculata_contig212:67..1123 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size529
Cds size297
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig212.5553.1prot_H-paniculata_contig212.5553.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig212 67..893 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929563.9868083-CDS-H-paniculata_contig212:66..2261622929563.9868083-CDS-H-paniculata_contig212:66..226Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig212 67..226 -
1691480915.843813-CDS-H-paniculata_contig212:66..2261691480915.843813-CDS-H-paniculata_contig212:66..226Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig212 67..226 -
1622929564.0045762-CDS-H-paniculata_contig212:756..8931622929564.0045762-CDS-H-paniculata_contig212:756..893Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig212 757..893 -
1691480915.852345-CDS-H-paniculata_contig212:756..8931691480915.852345-CDS-H-paniculata_contig212:756..893Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig212 757..893 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929564.0180397-UTR-H-paniculata_contig212:893..11231622929564.0180397-UTR-H-paniculata_contig212:893..1123Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig212 894..1123 -
1691480915.8706675-UTR-H-paniculata_contig212:893..11231691480915.8706675-UTR-H-paniculata_contig212:893..1123Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig212 894..1123 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig212.5553.1

>prot_H-paniculata_contig212.5553.1 ID=prot_H-paniculata_contig212.5553.1|Name=mRNA_H-paniculata_contig212.5553.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp
MDGGSEEDGELQGLTGNWRSALVVNGLHDALAEAERQRDEMAHMLSTTQP
TAPLFDEEEGHDDDHLGNPFTTSDTCTNPADASIRRPRGRVEPPPPPFL
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mRNA from alignment at H-paniculata_contig212:67..1123-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig212.5553.1 ID=mRNA_H-paniculata_contig212.5553.1|Name=mRNA_H-paniculata_contig212.5553.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1057bp|location=Sequence derived from alignment at H-paniculata_contig212:67..1123- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGATATTCTATGAGTGGTCGCGGTCTTCCGTGAACGATCCAGCGAAGT
TGGTAAGGATTTGTATTGGCTGCTGCTACTGCTGCTGCTGCTGTCTGTGG
CTTCAATCACCTGACCAGCAGATCCAGCCGTTACGTTTTTAAGCCTTGTG
GTAGAGCCAGGCGGGCGGACTCGGCGTCGTTGGTACCCGACTTCGGAGGT
GCCTATGTTCTTGTGGTGCAGTAGATAACAATGGATGGTGGTAGCGAAGA
AGACGGTGAATTGCAGGGACTGACCGGGAATTGGAGGTCGGCACTAGTCG
TCAACGGTCTGCACGATGCATTGGCCGAGGCAGAGAGGCAACGAGATGAG
ATGGCACACATGCTCAGGTAACGCCGCTCTCGGCTACTGTTCCACCTGAC
TCTAATGGTACCAGAAGGGAATGGCAGATGCGCAACCGTCTCAGCTTTCT
TGTCGTTATACTATCTGTTTGAATACAGTTGTTATGAGAGTGATGAGAAT
TGAACATCCTGAAAGGCGCTGAATAAAACGCATAACTTTTCTGATTGATC
GTGGTCTCTGCGGGGAGATCTCTATCTGTCGTTAGGTATGGGCTATATCG
GCAAGGGATGTAGACTGCTGCTGGCTGTATTGGCTGTACTGGCTGTTACT
ATTAATAAGTACCCTGTACTAATCTGAATGGAAATTTGGTGTCAACAACG
ACTTCGTCGGGAGCCCACACCAATATTGTAGGCATACCACAGAGTTGCAA
ACAGATCAAAAGCGTTTGAAAAACAATAAAATGAAGAAATGAAGAAGCAC
CTCCCCACCTCCTTCCCCACCCACCCACCTACCCACCCACCCACATCTTC
ACTCCACTGCCCGAATGCTCACAATTGCCCAAACCTTGTCATTGCAGCAC
GACGCAACCAACAGCGCCGCTCTTCGACGAAGAAGAAGGCCACGACGACG
ATCACCTCGGCAACCCCTTCACCACCTCGGACACTTGCACCAATCCGGCT
GACGCATCAATAAGACGGCCGCGCGGACGCGTGGAACCCCCCCCCCCCCC
CTTCCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig212:67..1123-

>mRNA_H-paniculata_contig212.5553.1 ID=mRNA_H-paniculata_contig212.5553.1|Name=mRNA_H-paniculata_contig212.5553.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at H-paniculata_contig212:67..1123- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGGTGGTAGCGAAGAAGACGGTGAATTGCAGGGACTGACCGGGAA
TTGGAGGTCGGCACTAGTCGTCAACGGTCTGCACGATGCATTGGCCGAGG
CAGAGAGGCAACGAGATGAGATGGCACACATGCTCAGATGGATGGTGGTA
GCGAAGAAGACGGTGAATTGCAGGGACTGACCGGGAATTGGAGGTCGGCA
CTAGTCGTCAACGGTCTGCACGATGCATTGGCCGAGGCAGAGAGGCAACG
AGATGAGATGGCACACATGCTCAGCACGACGCAACCAACAGCGCCGCTCT
TCGACGAAGAAGAAGGCCACGACGACGATCACCTCGGCAACCCCTTCACC
ACCTCGGACACTTGCACCAATCCGGCTGACGCATCAATAAGACGGCCGCG
CGGACGCGTGGAACCCCCCCCCCCCCCCTTCCTGCACGACGCAACCAACA
GCGCCGCTCTTCGACGAAGAAGAAGGCCACGACGACGATCACCTCGGCAA
CCCCTTCACCACCTCGGACACTTGCACCAATCCGGCTGACGCATCAATAA
GACGGCCGCGCGGACGCGTGGAACCCCCCCCCCCCCCCTTCCTG
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