mRNA_H-paniculata_contig21192.5552.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21192.5552.1
Unique NamemRNA_H-paniculata_contig21192.5552.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21192.5552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21192contigH-paniculata_contig21192:2138..2665 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size203
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929563.8353915-CDS-H-paniculata_contig21192:2137..22171622929563.8353915-CDS-H-paniculata_contig21192:2137..2217Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21192 2138..2217 +
1691480915.7935066-CDS-H-paniculata_contig21192:2137..22171691480915.7935066-CDS-H-paniculata_contig21192:2137..2217Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21192 2138..2217 +
1622929563.8600912-CDS-H-paniculata_contig21192:2544..26651622929563.8600912-CDS-H-paniculata_contig21192:2544..2665Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21192 2545..2665 +
1691480915.8047526-CDS-H-paniculata_contig21192:2544..26651691480915.8047526-CDS-H-paniculata_contig21192:2544..2665Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21192 2545..2665 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21192.5552.1prot_H-paniculata_contig21192.5552.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21192 2138..2665 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21192.5552.1

>prot_H-paniculata_contig21192.5552.1 ID=prot_H-paniculata_contig21192.5552.1|Name=mRNA_H-paniculata_contig21192.5552.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
DYFCNRSSSCSCWCQQLFCVGERLQVQTENIFIHDGVPLAAGSAAMTDGS
LSTKCAAKLVVVSIAGD
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mRNA from alignment at H-paniculata_contig21192:2138..2665+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21192.5552.1 ID=mRNA_H-paniculata_contig21192.5552.1|Name=mRNA_H-paniculata_contig21192.5552.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=528bp|location=Sequence derived from alignment at H-paniculata_contig21192:2138..2665+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACTACTTCTGCAACCGTTCGTCCTCTTGCTCTTGCTGGTGCCAGCAACT
CTTCTGCGTTGGTGAACGCTTGCAGGTACAGTTGGGGACGAATAAATGTC
GTTGTGTTGCTTTTTATGAATGGTAGACTTTGTTGTCATCGTCAGGTAGG
TCGTCAGCCTGCCTCTGTTGCTTGCATGTTTTACTTGTTAGTCTTCCTCA
TATCAACTTGCATTACACCTGGCGTCAAAGTACGGGAGCTCCGTTACATG
TAGACTACATGAGACTGCTTCATGTCTTCTACATGAATCACTGCATATTT
ATTTACAACAGTGTGTCCTCCATGGATTTCGCTTCACGAGAATGATGATT
GGCGTGCACGATCCCCATAACACCTACCACGTACCCCTATTCATTGCCGC
TATGAAGGACCGAGAACATTTTTATTCATGATGGGGTGCCTCTTGCAGCT
GGGTCGGCGGCCATGACAGATGGGAGTCTGTCCACCAAGTGTGCGGCCAA
ATTGGTGGTTGTCTCCATTGCAGGAGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig21192:2138..2665+

>mRNA_H-paniculata_contig21192.5552.1 ID=mRNA_H-paniculata_contig21192.5552.1|Name=mRNA_H-paniculata_contig21192.5552.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig21192:2138..2665+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACTACTTCTGCAACCGTTCGTCCTCTTGCTCTTGCTGGTGCCAGCAACT
CTTCTGCGTTGGTGAACGCTTGCAGGTACAGACTACTTCTGCAACCGTTC
GTCCTCTTGCTCTTGCTGGTGCCAGCAACTCTTCTGCGTTGGTGAACGCT
TGCAGGTACAGACCGAGAACATTTTTATTCATGATGGGGTGCCTCTTGCA
GCTGGGTCGGCGGCCATGACAGATGGGAGTCTGTCCACCAAGTGTGCGGC
CAAATTGGTGGTTGTCTCCATTGCAGGAGACGACCGAGAACATTTTTATT
CATGATGGGGTGCCTCTTGCAGCTGGGTCGGCGGCCATGACAGATGGGAG
TCTGTCCACCAAGTGTGCGGCCAAATTGGTGGTTGTCTCCATTGCAGGAG
AC
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