mRNA_H-paniculata_contig2119.5551.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2119.5551.1
Unique NamemRNA_H-paniculata_contig2119.5551.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2119.5551.1 vs. uniprot
Match: A0A8F0JXK8_9PHAE (Ribosomal protein S5 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JXK8_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 1.780e-59
Identity = 97/102 (95.10%), Postives = 100/102 (98.04%), Query Frame = 1 
Query:    1 MTTSNQKIVWEKRVVKVSRVSKVVKGGKKISFRATVVVGNMEGKVGVGIGKAEEVSTAIKKAETDAQKNVINVPISEGKTIPHPIMGIDGGSKVFIRPAVQG 306
            MTTSN KIVWEKRVVK+SRVSKVVKGGKKISFRATVVVG+MEGKVGVGIGKAEEVSTAIKKAETDAQKNVINVPISEGKTIPHPI+GIDGGSKVFIRPAV G
Sbjct:    1 MTTSNNKIVWEKRVVKISRVSKVVKGGKKISFRATVVVGDMEGKVGVGIGKAEEVSTAIKKAETDAQKNVINVPISEGKTIPHPIIGIDGGSKVFIRPAVPG 102
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BLAST of mRNA_H-paniculata_contig2119.5551.1 vs. uniprot
Match: A0A141BSM5_9PHAE (30S ribosomal protein S5, chloroplastic n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSM5_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 5.570e-51
Identity = 79/102 (77.45%), Postives = 97/102 (95.10%), Query Frame = 1 
Query:    1 MTTSNQKIVWEKRVVKVSRVSKVVKGGKKISFRATVVVGNMEGKVGVGIGKAEEVSTAIKKAETDAQKNVINVPISEGKTIPHPIMGIDGGSKVFIRPAVQG 306
            M+T N+KI+WE+RVVKVSRVSKVVKGGKKISFRATVV+G+ME KVGVG+GKA+EVS A+KKAETDA+KN+IN+P++EGKTIPH ++G+ GGSK+FIRPAVQG
Sbjct:    1 MSTENEKIIWEQRVVKVSRVSKVVKGGKKISFRATVVIGDMEQKVGVGVGKAKEVSIAVKKAETDAKKNIINIPVAEGKTIPHSMIGVAGGSKIFIRPAVQG 102
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BLAST of mRNA_H-paniculata_contig2119.5551.1 vs. uniprot
Match: D1GJR6_FUCVE (30S ribosomal protein S5, chloroplastic n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJR6_FUCVE)

HSP 1 Score: 166 bits (421), Expect = 7.900e-51
Identity = 84/102 (82.35%), Postives = 94/102 (92.16%), Query Frame = 1 
Query:    1 MTTSNQKIVWEKRVVKVSRVSKVVKGGKKISFRATVVVGNMEGKVGVGIGKAEEVSTAIKKAETDAQKNVINVPISEGKTIPHPIMGIDGGSKVFIRPAVQG 306
            M T N KI+WE+RVVKVSRVSKVVKGGKKISFRATVVVG+ME KVGVG+GKA+EVSTA+KKAETDA+KNVIN+PI EGKTIPH ++GI GGSKVFIRPAV G
Sbjct:    1 MNTENTKIIWEQRVVKVSRVSKVVKGGKKISFRATVVVGDMEDKVGVGVGKAKEVSTAVKKAETDAKKNVINIPIVEGKTIPHSMIGIAGGSKVFIRPAVPG 102
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BLAST of mRNA_H-paniculata_contig2119.5551.1 vs. uniprot
Match: A0A0S0GN90_COSCS (30S ribosomal protein S5, chloroplastic n=30 Tax=Phaeophyceae TaxID=2870 RepID=A0A0S0GN90_COSCS)

HSP 1 Score: 163 bits (413), Expect = 1.300e-49
Identity = 83/102 (81.37%), Postives = 94/102 (92.16%), Query Frame = 1 
Query:    1 MTTSNQKIVWEKRVVKVSRVSKVVKGGKKISFRATVVVGNMEGKVGVGIGKAEEVSTAIKKAETDAQKNVINVPISEGKTIPHPIMGIDGGSKVFIRPAVQG 306
            MTT N+KI WE+RVVK+SRVSKVVKGGKKISFRATVVVG+ME +VGVG+GKAEEVSTAIKKAETDA+KNV+ +PI EGKTIPH ++GI GGSKVFIRPAV G
Sbjct:    1 MTTPNKKIRWEQRVVKISRVSKVVKGGKKISFRATVVVGDMEERVGVGVGKAEEVSTAIKKAETDAKKNVLTIPIVEGKTIPHAMVGIAGGSKVFIRPAVPG 102
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BLAST of mRNA_H-paniculata_contig2119.5551.1 vs. uniprot
Match: A0A7T8JJZ4_SCYLO (30S ribosomal protein S5, chloroplastic n=7 Tax=Ectocarpales TaxID=2877 RepID=A0A7T8JJZ4_SCYLO)

HSP 1 Score: 159 bits (401), Expect = 1.080e-47
Identity = 83/102 (81.37%), Postives = 92/102 (90.20%), Query Frame = 1 
Query:    1 MTTSNQKIVWEKRVVKVSRVSKVVKGGKKISFRATVVVGNMEGKVGVGIGKAEEVSTAIKKAETDAQKNVINVPISEGKTIPHPIMGIDGGSKVFIRPAVQG 306
            MT  N+ I WEKRVVKVSRVSKVVKGGKKISFRATVVVG+ME +VGVG+GKAEEVSTAIKKAETDA+KNVI VPI+EGKTIPH  +G++ GSKVFIRPAV G
Sbjct:    8 MTNQNKDINWEKRVVKVSRVSKVVKGGKKISFRATVVVGDMEYQVGVGVGKAEEVSTAIKKAETDARKNVIIVPIAEGKTIPHATVGVECGSKVFIRPAVPG 109
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BLAST of mRNA_H-paniculata_contig2119.5551.1 vs. uniprot
Match: A0A1I9LVF8_9PHAE (30S ribosomal protein S5, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVF8_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 1.400e-44
Identity = 80/103 (77.67%), Postives = 90/103 (87.38%), Query Frame = 1 
Query:    1 MTTSNQKIVWEKRVVKVSRVSKVVKGGKKISFRATVVVGNMEGK-VGVGIGKAEEVSTAIKKAETDAQKNVINVPISEGKTIPHPIMGIDGGSKVFIRPAVQG 306
            MTT N+K  WEKRVVK+SRVSKVVKGGKKISFRATVVVG++E K VGVG+GKA++VSTA+KKAETD  KNVINV I+EGKTIPH   GI+ GSKVFIRPAV G
Sbjct:    1 MTTENKKSSWEKRVVKISRVSKVVKGGKKISFRATVVVGDIEKKQVGVGVGKAKDVSTAVKKAETDGIKNVINVQIAEGKTIPHATFGIECGSKVFIRPAVPG 103
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BLAST of mRNA_H-paniculata_contig2119.5551.1 vs. uniprot
Match: A0A8E6D2P2_9PHAE (30S ribosomal protein S5, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D2P2_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 3.060e-39
Identity = 68/100 (68.00%), Postives = 83/100 (83.00%), Query Frame = 1 
Query:    7 TSNQKIVWEKRVVKVSRVSKVVKGGKKISFRATVVVGNMEGKVGVGIGKAEEVSTAIKKAETDAQKNVINVPISEGKTIPHPIMGIDGGSKVFIRPAVQG 306
            T N+ + WEKRVVK++RVSKVVKGGKK+SFRAT+V GN  G VGVGIGKAEE + AIKKAE +A+KN++ VP+ +G+TIPH I+G  GG KVFIRPAV G
Sbjct:    6 TLNKNVRWEKRVVKIARVSKVVKGGKKLSFRATLVTGNRNGLVGVGIGKAEETALAIKKAEVNAKKNLVKVPLVKGQTIPHSIIGNTGGCKVFIRPAVPG 105
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BLAST of mRNA_H-paniculata_contig2119.5551.1 vs. uniprot
Match: A0A2I4Q2I9_9PHAE (30S ribosomal protein S5, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2I9_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 4.090e-39
Identity = 70/93 (75.27%), Postives = 80/93 (86.02%), Query Frame = 1 
Query:   28 WEKRVVKVSRVSKVVKGGKKISFRATVVVGNMEGKVGVGIGKAEEVSTAIKKAETDAQKNVINVPISEGKTIPHPIMGIDGGSKVFIRPAVQG 306
            WEKRVVKVSRVSKVVKGGKKISFRATVV+G+ + KVGVG+GKA EVS AIKKAET+A+KNVI + +  G+TI H I+G  GGSKVFIRPAV G
Sbjct:   11 WEKRVVKVSRVSKVVKGGKKISFRATVVIGDKKNKVGVGMGKAVEVSNAIKKAETNAKKNVITITVESGQTISHSILGAAGGSKVFIRPAVPG 103
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BLAST of mRNA_H-paniculata_contig2119.5551.1 vs. uniprot
Match: B7T1W8_VAULI (30S ribosomal protein S5, chloroplastic n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1W8_VAULI)

HSP 1 Score: 125 bits (313), Expect = 3.720e-34
Identity = 66/109 (60.55%), Postives = 83/109 (76.15%), Query Frame = 1 
Query:    4 TTSNQK--------IVWEKRVVKVSRVSKVVKGGKKISFRATVVVGNMEGKVGVGIGKAEEVSTAIKKAETDAQKNVINVPISEGKTIPHPIMGIDGGSKVFIRPAVQG 306
            TT N+K        I WE+RVV++SRV KVVKGGKK+SFRATV++GN    VGVG+GKA+EVSTAI+KA   A+KN+I +P+++ KTIPH I+GIDG SKV IR A  G
Sbjct:   14 TTRNRKNKKVQEKTIRWEQRVVQISRVVKVVKGGKKLSFRATVIIGNKNSHVGVGVGKADEVSTAIQKAVNHARKNLIQIPLTKTKTIPHNIIGIDGASKVLIRTAGPG 122
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BLAST of mRNA_H-paniculata_contig2119.5551.1 vs. uniprot
Match: A0A1C9CCF6_9FLOR (30S ribosomal protein S5, chloroplastic n=1 Tax=Asparagopsis taxiformis TaxID=260499 RepID=A0A1C9CCF6_9FLOR)

HSP 1 Score: 122 bits (306), Expect = 2.810e-33
Identity = 56/100 (56.00%), Postives = 80/100 (80.00%), Query Frame = 1 
Query:    7 TSNQKIVWEKRVVKVSRVSKVVKGGKKISFRATVVVGNMEGKVGVGIGKAEEVSTAIKKAETDAQKNVINVPISEGKTIPHPIMGIDGGSKVFIRPAVQG 306
            +  Q+ +WE+RVV+V RV+KVVKGGKK+SFRA +VVGN +G++GVG+GKA +V  A+KK  TDA+K++IN+P++   +IPHP+ GI G +KV IRP+  G
Sbjct:   10 SKEQETIWEERVVQVRRVTKVVKGGKKLSFRAILVVGNEKGQIGVGVGKASDVIGAVKKGVTDAKKHLINIPLTHTNSIPHPMQGISGAAKVMIRPSAPG 109
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2119.5551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0JXK8_9PHAE1.780e-5995.10Ribosomal protein S5 n=1 Tax=Protohalopteris sp. T... [more]
A0A141BSM5_9PHAE5.570e-5177.4530S ribosomal protein S5, chloroplastic n=13 Tax=S... [more]
D1GJR6_FUCVE7.900e-5182.3530S ribosomal protein S5, chloroplastic n=3 Tax=Fu... [more]
A0A0S0GN90_COSCS1.300e-4981.3730S ribosomal protein S5, chloroplastic n=30 Tax=P... [more]
A0A7T8JJZ4_SCYLO1.080e-4781.3730S ribosomal protein S5, chloroplastic n=7 Tax=Ec... [more]
A0A1I9LVF8_9PHAE1.400e-4477.6730S ribosomal protein S5, chloroplastic n=1 Tax=Pl... [more]
A0A8E6D2P2_9PHAE3.060e-3968.0030S ribosomal protein S5, chloroplastic n=1 Tax=Is... [more]
A0A2I4Q2I9_9PHAE4.090e-3975.2730S ribosomal protein S5, chloroplastic n=1 Tax=Di... [more]
B7T1W8_VAULI3.720e-3460.5530S ribosomal protein S5, chloroplastic n=1 Tax=Va... [more]
A0A1C9CCF6_9FLOR2.810e-3356.0030S ribosomal protein S5, chloroplastic n=1 Tax=As... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2119contigH-paniculata_contig2119:22395..22700 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score163.3
Seed ortholog evalue5.9e-38
Seed eggNOG ortholog2880.D1J736
Preferred namerps5
KEGG koko:K02988
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000313,GO:0000314,GO:0003002,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005763,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006950,GO:0006996,GO:0007275,GO:0007389,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009266,GO:0009409,GO:0009507,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009657,GO:0009955,GO:0009987,GO:0010035,GO:0010038,GO:0010467,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0031974,GO:0031976,GO:0031984,GO:0032501,GO:0032502,GO:0032544,GO:0032991,GO:0034357,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042221,GO:0042254,GO:0042651,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046686,GO:0048856,GO:0050896,GO:0055035,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0098798,GO:1901259,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0098@1,KOG0877@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size306
Cds size306
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929563.7833629-CDS-H-paniculata_contig2119:22394..227001622929563.7833629-CDS-H-paniculata_contig2119:22394..22700Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2119 22395..22700 +
1691480915.7796412-CDS-H-paniculata_contig2119:22394..227001691480915.7796412-CDS-H-paniculata_contig2119:22394..22700Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2119 22395..22700 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2119.5551.1prot_H-paniculata_contig2119.5551.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2119 22395..22700 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2119.5551.1

>prot_H-paniculata_contig2119.5551.1 ID=prot_H-paniculata_contig2119.5551.1|Name=mRNA_H-paniculata_contig2119.5551.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
MTTSNQKIVWEKRVVKVSRVSKVVKGGKKISFRATVVVGNMEGKVGVGIG
KAEEVSTAIKKAETDAQKNVINVPISEGKTIPHPIMGIDGGSKVFIRPAV
QG
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mRNA from alignment at H-paniculata_contig2119:22395..22700+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2119.5551.1 ID=mRNA_H-paniculata_contig2119.5551.1|Name=mRNA_H-paniculata_contig2119.5551.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=306bp|location=Sequence derived from alignment at H-paniculata_contig2119:22395..22700+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTACTTCGAATCAAAAAATCGTTTGGGAAAAAAGAGTAGTTAAAGT
TTCTAGGGTTTCGAAGGTTGTAAAAGGTGGGAAAAAAATCAGTTTTCGTG
CAACAGTTGTTGTAGGTAATATGGAAGGAAAAGTAGGTGTTGGAATTGGG
AAAGCGGAAGAAGTTAGTACTGCGATAAAGAAGGCAGAAACCGATGCACA
AAAAAATGTAATAAATGTTCCTATTTCTGAAGGAAAAACAATTCCTCACC
CAATTATGGGAATTGATGGTGGATCAAAAGTATTTATTCGTCCTGCTGTA
CAAGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig2119:22395..22700+

>mRNA_H-paniculata_contig2119.5551.1 ID=mRNA_H-paniculata_contig2119.5551.1|Name=mRNA_H-paniculata_contig2119.5551.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig2119:22395..22700+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTACTTCGAATCAAAAAATCGTTTGGGAAAAAAGAGTAGTTAAAGT
TTCTAGGGTTTCGAAGGTTGTAAAAGGTGGGAAAAAAATCAGTTTTCGTG
CAACAGTTGTTGTAGGTAATATGGAAGGAAAAGTAGGTGTTGGAATTGGG
AAAGCGGAAGAAGTTAGTACTGCGATAAAGAAGGCAGAAACCGATGCACA
AAAAAATGTAATAAATGTTCCTATTTCTGAAGGAAAAACAATTCCTCACC
CAATTATGGGAATTGATGGTGGATCAAAAGTATTTATTCGTCCTGCTGTA
CAAGGAATGACTACTTCGAATCAAAAAATCGTTTGGGAAAAAAGAGTAGT
TAAAGTTTCTAGGGTTTCGAAGGTTGTAAAAGGTGGGAAAAAAATCAGTT
TTCGTGCAACAGTTGTTGTAGGTAATATGGAAGGAAAAGTAGGTGTTGGA
ATTGGGAAAGCGGAAGAAGTTAGTACTGCGATAAAGAAGGCAGAAACCGA
TGCACAAAAAAATGTAATAAATGTTCCTATTTCTGAAGGAAAAACAATTC
CTCACCCAATTATGGGAATTGATGGTGGATCAAAAGTATTTATTCGTCCT
GCTGTACAAGGA
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