mRNA_H-paniculata_contig2119.5550.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig2119.5550.1
Unique Name	mRNA_H-paniculata_contig2119.5550.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig2119.5550.1 vs. uniprot
Match: A0A8F0F787_9PHAE (Ribosomal protein L18 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F787_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 7.860e-64
Identity = 102/109 (93.58%), Postives = 106/109 (97.25%), Query Frame = 1

Query:    1 MGKREKKRIKGTESKPRLSIYRSNKHIYVQVIDDSSSKTIASCSTLEMEVKAKCEKTATKLASKIVGELIGTRLRAKNIKEIIFDRGKKPYHGRIKELADGARIGGLSF 327
            MGKREKKRIKGTE KPRLSIYRSNKHIYVQVIDDS SKTIASCSTL++EVKAKCEKTATKLASKIVGELIG RLRAKNIKEIIFDRGKKPYHGRIKELA+GAR+GGLSF
Sbjct:    1 MGKREKKRIKGTELKPRLSIYRSNKHIYVQVIDDSCSKTIASCSTLDIEVKAKCEKTATKLASKIVGELIGIRLRAKNIKEIIFDRGKKPYHGRIKELAEGARLGGLSF 109

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BLAST of mRNA_H-paniculata_contig2119.5550.1 vs. uniprot
Match: A0A8F0JZH3_9PHAE (Ribosomal protein L18 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0JZH3_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 6.420e-54
Identity = 88/109 (80.73%), Postives = 99/109 (90.83%), Query Frame = 1

Query:    1 MGKREKKRIKGTESKPRLSIYRSNKHIYVQVIDDSSSKTIASCSTLEMEVKAKCEKTATKLASKIVGELIGTRLRAKNIKEIIFDRGKKPYHGRIKELADGARIGGLSF 327
            MGKREKK+IKGT  KPRL+I+RSNKHIY QVIDDS SKTI SCSTLE+EVK KCEKT+TK ASKIVGE+IGTRL A+NIKEIIFDRG KPYHGRIKELA+GAR+ G++F
Sbjct:    1 MGKREKKKIKGTNLKPRLAIHRSNKHIYAQVIDDSCSKTIISCSTLEIEVKTKCEKTSTKEASKIVGEVIGTRLLAENIKEIIFDRGTKPYHGRIKELAEGARLVGVNF 109

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BLAST of mRNA_H-paniculata_contig2119.5550.1 vs. uniprot
Match: D1J737_ECTSI (50S ribosomal protein L18 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J737_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 5.270e-53
Identity = 87/109 (79.82%), Postives = 95/109 (87.16%), Query Frame = 1

Query:    1 MGKREKKRIKGTESKPRLSIYRSNKHIYVQVIDDSSSKTIASCSTLEMEVKAKCEKTATKLASKIVGELIGTRLRAKNIKEIIFDRGKKPYHGRIKELADGARIGGLSF 327
            MGKREKKRIKG   KPRL+++RSNKHIY QVIDDS S TI SCSTLE+EVKAKCEKT+ KLASKIVGE IGTRL   NIKEI+FDRGKK YHGRIKELA+GAR+ GLSF
Sbjct:    1 MGKREKKRIKGNHLKPRLTVFRSNKHIYAQVIDDSDSTTITSCSTLEIEVKAKCEKTSNKLASKIVGETIGTRLLKHNIKEIVFDRGKKSYHGRIKELAEGARLVGLSF 109

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BLAST of mRNA_H-paniculata_contig2119.5550.1 vs. uniprot
Match: A0A0R6M4V6_UNDPI (50S ribosomal protein L18, chloroplastic n=28 Tax=Laminariales TaxID=2886 RepID=A0A0R6M4V6_UNDPI)

HSP 1 Score: 169 bits (427), Expect = 2.150e-52
Identity = 86/109 (78.90%), Postives = 96/109 (88.07%), Query Frame = 1

Query:    1 MGKREKKRIKGTESKPRLSIYRSNKHIYVQVIDDSSSKTIASCSTLEMEVKAKCEKTATKLASKIVGELIGTRLRAKNIKEIIFDRGKKPYHGRIKELADGARIGGLSF 327
            MGKREKK IKG   KPRL+++RSNKHIY QVIDDS SKTI SCSTLE+EVKAKCEKT+ K+ASKIVGE+IG RL  +NIKEIIFDRGKK YHGRIKELA+GAR+ GLSF
Sbjct:    1 MGKREKKIIKGNNIKPRLAVFRSNKHIYAQVIDDSCSKTIISCSTLELEVKAKCEKTSNKMASKIVGEIIGARLLEENIKEIIFDRGKKSYHGRIKELAEGARLVGLSF 109

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BLAST of mRNA_H-paniculata_contig2119.5550.1 vs. uniprot
Match: A0A1I9LVY4_9PHAE (50S ribosomal protein L18, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVY4_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 1.760e-51
Identity = 84/109 (77.06%), Postives = 95/109 (87.16%), Query Frame = 1

Query:    1 MGKREKKRIKGTESKPRLSIYRSNKHIYVQVIDDSSSKTIASCSTLEMEVKAKCEKTATKLASKIVGELIGTRLRAKNIKEIIFDRGKKPYHGRIKELADGARIGGLSF 327
            MGKRE+KRIKG  +KPRL+++RSNKHIY QVI+D  S TI SCSTLE+EVKAKCEKT  K ASKIVGE+IGTRL  KNIKEI+FDRGKK YHGRIKELA+GAR+ GLSF
Sbjct:    1 MGKRERKRIKGDHNKPRLTVFRSNKHIYAQVINDYDSTTITSCSTLEVEVKAKCEKTCNKPASKIVGEIIGTRLMKKNIKEIVFDRGKKSYHGRIKELAEGARLVGLSF 109

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BLAST of mRNA_H-paniculata_contig2119.5550.1 vs. uniprot
Match: A0A8F0JYJ6_9PHAE (Ribosomal protein L18 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JYJ6_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 1.760e-51
Identity = 85/109 (77.98%), Postives = 95/109 (87.16%), Query Frame = 1

Query:    1 MGKREKKRIKGTESKPRLSIYRSNKHIYVQVIDDSSSKTIASCSTLEMEVKAKCEKTATKLASKIVGELIGTRLRAKNIKEIIFDRGKKPYHGRIKELADGARIGGLSF 327
            MGKREKK+IKG   KPRL+IYRSNKHIY QVIDDS SKTI SCSTLE+EVK KCEKT+ K+ASKIVGE+I TRL  +NIKEIIFDRGK+ YHGRIKELA+GAR+ GL F
Sbjct:    1 MGKREKKKIKGNNLKPRLAIYRSNKHIYAQVIDDSCSKTILSCSTLEIEVKEKCEKTSNKVASKIVGEIIATRLLQENIKEIIFDRGKRSYHGRIKELAEGARLVGLHF 109

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BLAST of mRNA_H-paniculata_contig2119.5550.1 vs. uniprot
Match: A0A7T8JK65_SCYLO (50S ribosomal protein L18, chloroplastic n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8JK65_SCYLO)

HSP 1 Score: 166 bits (419), Expect = 3.670e-51
Identity = 83/109 (76.15%), Postives = 97/109 (88.99%), Query Frame = 1

Query:    1 MGKREKKRIKGTESKPRLSIYRSNKHIYVQVIDDSSSKTIASCSTLEMEVKAKCEKTATKLASKIVGELIGTRLRAKNIKEIIFDRGKKPYHGRIKELADGARIGGLSF 327
            MGKREKKRIKG   KPRL+++RSNKHIY QVIDDS S TI SCSTLE+EVKAKCEKT+ K+ASKIVGE+IGTRL  ++IKEI+FDRG+K YHGRIKELA+GAR+ GL+F
Sbjct:    2 MGKREKKRIKGDGRKPRLAVFRSNKHIYAQVIDDSDSTTITSCSTLEIEVKAKCEKTSNKVASKIVGEIIGTRLLEQDIKEIVFDRGQKSYHGRIKELAEGARLVGLNF 110

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BLAST of mRNA_H-paniculata_contig2119.5550.1 vs. uniprot
Match: D1GJR7_FUCVE (50S ribosomal protein L18, chloroplastic n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJR7_FUCVE)

HSP 1 Score: 165 bits (417), Expect = 7.180e-51
Identity = 84/109 (77.06%), Postives = 95/109 (87.16%), Query Frame = 1

Query:    1 MGKREKKRIKGTESKPRLSIYRSNKHIYVQVIDDSSSKTIASCSTLEMEVKAKCEKTATKLASKIVGELIGTRLRAKNIKEIIFDRGKKPYHGRIKELADGARIGGLSF 327
            MGKREKK+IKG   KPRLSIYRSNKHIY QVIDDSSSKTI SCSTLE+EVK+KC  T+ KLASK+VGE+I TRL  ++I EIIFDRGKKPYHGRIKELA+ AR+ GL+F
Sbjct:    1 MGKREKKKIKGNNLKPRLSIYRSNKHIYAQVIDDSSSKTIISCSTLELEVKSKCLNTSNKLASKVVGEIIETRLLKEDINEIIFDRGKKPYHGRIKELAEAARLKGLNF 109

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BLAST of mRNA_H-paniculata_contig2119.5550.1 vs. uniprot
Match: A0A2I4Q2I8_9PHAE (50S ribosomal protein L18, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2I8_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 3.410e-49
Identity = 78/109 (71.56%), Postives = 96/109 (88.07%), Query Frame = 1

Query:    1 MGKREKKRIKGTESKPRLSIYRSNKHIYVQVIDDSSSKTIASCSTLEMEVKAKCEKTATKLASKIVGELIGTRLRAKNIKEIIFDRGKKPYHGRIKELADGARIGGLSF 327
            MGKR+KK IKGT SKPRL++YRSN HIY QVIDDS SKT+ SCSTL++++K KC+KTA K+ASK+VGE+IGT+L  K+I+EIIFDRGK+PYHGRIKELA+GAR  G+ F
Sbjct:    1 MGKRDKKIIKGTGSKPRLAVYRSNNHIYAQVIDDSCSKTMLSCSTLDVQIKIKCQKTANKIASKMVGEIIGTKLLEKDIQEIIFDRGKRPYHGRIKELAEGARFVGVKF 109

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BLAST of mRNA_H-paniculata_contig2119.5550.1 vs. uniprot
Match: A0A6B7EYI1_9PHAE (50S ribosomal protein L18 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EYI1_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 4.850e-49
Identity = 80/109 (73.39%), Postives = 94/109 (86.24%), Query Frame = 1

Query:    1 MGKREKKRIKGTESKPRLSIYRSNKHIYVQVIDDSSSKTIASCSTLEMEVKAKCEKTATKLASKIVGELIGTRLRAKNIKEIIFDRGKKPYHGRIKELADGARIGGLSF 327
            MGKREKKRIKG + KPRLS++RSN HIY QVIDDS+S TI SCSTLE EVKAKCEKT+ K AS+IVGE+IG+RL  +NI +I+FDRGKK YHGRIKE+A+GAR+ GL F
Sbjct:    1 MGKREKKRIKGNKLKPRLSVFRSNNHIYAQVIDDSASITITSCSTLETEVKAKCEKTSNKPASRIVGEIIGSRLLEQNINQIVFDRGKKTYHGRIKEVAEGARLAGLCF 109

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig2119.5550.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig2119.5550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A8F0F787_9PHAE	7.860e-64	93.58	Ribosomal protein L18 n=1 Tax=Protohalopteris sp. ...	[more]
A0A8F0JZH3_9PHAE	6.420e-54	80.73	Ribosomal protein L18 n=1 Tax=Desmarestia aculeata...	[more]
D1J737_ECTSI	5.270e-53	79.82	50S ribosomal protein L18 n=1 Tax=Ectocarpus silic...	[more]
A0A0R6M4V6_UNDPI	2.150e-52	78.90	50S ribosomal protein L18, chloroplastic n=28 Tax=...	[more]
A0A1I9LVY4_9PHAE	1.760e-51	77.06	50S ribosomal protein L18, chloroplastic n=1 Tax=P...	[more]
A0A8F0JYJ6_9PHAE	1.760e-51	77.98	Ribosomal protein L18 n=1 Tax=Chorda asiatica TaxI...	[more]
A0A7T8JK65_SCYLO	3.670e-51	76.15	50S ribosomal protein L18, chloroplastic n=5 Tax=S...	[more]
D1GJR7_FUCVE	7.180e-51	77.06	50S ribosomal protein L18, chloroplastic n=3 Tax=F...	[more]
A0A2I4Q2I8_9PHAE	3.410e-49	71.56	50S ribosomal protein L18, chloroplastic n=1 Tax=D...	[more]
A0A6B7EYI1_9PHAE	4.850e-49	73.39	50S ribosomal protein L18 n=1 Tax=Cladosiphon okam...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig2119	contig	H-paniculata_contig2119:22018..22347 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	172.6
Seed ortholog evalue	1.1e-40
Seed eggNOG ortholog	2880.D1J737
Preferred name	rpl18
KEGG ko	ko:K02881
KEGG Pathway	ko03010,map03010
KEGG Module	M00178,M00179
Hectar predicted targeting category	other localisation
GOs	GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0008097,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0019843,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0097159,GO:1901363
EggNOG free text desc.	ubiquitinyl hydrolase activity
EggNOG OGs	COG5560@1,KOG1870@2759
COG Functional cat.	O
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	br01610,ko00000,ko00001,ko00002,ko03011
Exons	1
Model size	330
Cds size	330
Stop	1
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929563.7256277-CDS-H-paniculata_contig2119:22017..22347	1622929563.7256277-CDS-H-paniculata_contig2119:22017..22347	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig2119 22018..22347 +
1691480915.7655866-CDS-H-paniculata_contig2119:22017..22347	1691480915.7655866-CDS-H-paniculata_contig2119:22017..22347	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig2119 22018..22347 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig2119.5550.1	prot_H-paniculata_contig2119.5550.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig2119 22018..22347 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig2119:22018..22347+
coding sequence from alignment at H-paniculata_contig2119:22018..22347+

protein sequence of mRNA_H-paniculata_contig2119.5550.1

>prot_H-paniculata_contig2119.5550.1 ID=prot_H-paniculata_contig2119.5550.1|Name=mRNA_H-paniculata_contig2119.5550.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
MGKREKKRIKGTESKPRLSIYRSNKHIYVQVIDDSSSKTIASCSTLEMEV
KAKCEKTATKLASKIVGELIGTRLRAKNIKEIIFDRGKKPYHGRIKELAD
GARIGGLSF*

mRNA from alignment at H-paniculata_contig2119:22018..22347+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig2119.5550.1 ID=mRNA_H-paniculata_contig2119.5550.1|Name=mRNA_H-paniculata_contig2119.5550.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=330bp|location=Sequence derived from alignment at H-paniculata_contig2119:22018..22347+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAAAAAGAGAAAAAAAAAGAATTAAAGGTACGGAATCAAAGCCACG
TTTATCTATTTATCGTTCAAATAAACATATTTATGTTCAAGTAATCGATG
ATTCATCTTCGAAAACTATTGCGAGTTGTTCCACTTTAGAAATGGAAGTA
AAAGCAAAATGTGAAAAAACTGCAACTAAACTTGCGTCCAAAATTGTAGG
AGAGTTAATTGGGACAAGATTAAGAGCAAAAAATATTAAAGAAATAATAT
TTGATCGTGGAAAAAAACCCTATCATGGTAGAATCAAAGAGCTTGCTGAT
GGAGCTCGAATTGGAGGATTAAGTTTTTAA

Coding sequence (CDS) from alignment at H-paniculata_contig2119:22018..22347+

>mRNA_H-paniculata_contig2119.5550.1 ID=mRNA_H-paniculata_contig2119.5550.1|Name=mRNA_H-paniculata_contig2119.5550.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig2119:22018..22347+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAAAAAGAGAAAAAAAAAGAATTAAAGGTACGGAATCAAAGCCACG
TTTATCTATTTATCGTTCAAATAAACATATTTATGTTCAAGTAATCGATG
ATTCATCTTCGAAAACTATTGCGAGTTGTTCCACTTTAGAAATGGAAGTA
AAAGCAAAATGTGAAAAAACTGCAACTAAACTTGCGTCCAAAATTGTAGG
AGAGTTAATTGGGACAAGATTAAGAGCAAAAAATATTAAAGAAATAATAT
TTGATCGTGGAAAAAAACCCTATCATGGTAGAATCAAAGAGCTTGCTGAT
GGAGCTCGAATTGGAGGATTAAGTTTTTAAATGGGAAAAAGAGAAAAAAA
AAGAATTAAAGGTACGGAATCAAAGCCACGTTTATCTATTTATCGTTCAA
ATAAACATATTTATGTTCAAGTAATCGATGATTCATCTTCGAAAACTATT
GCGAGTTGTTCCACTTTAGAAATGGAAGTAAAAGCAAAATGTGAAAAAAC
TGCAACTAAACTTGCGTCCAAAATTGTAGGAGAGTTAATTGGGACAAGAT
TAAGAGCAAAAAATATTAAAGAAATAATATTTGATCGTGGAAAAAAACCC
TATCATGGTAGAATCAAAGAGCTTGCTGATGGAGCTCGAATTGGAGGATT
AAGTTTTTAA