mRNA_H-paniculata_contig21188.5547.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21188.5547.1
Unique NamemRNA_H-paniculata_contig21188.5547.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig21188.5547.1 vs. uniprot
Match: D7FIQ7_ECTSI (GRAM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIQ7_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 2.990e-6
Identity = 103/386 (26.68%), Postives = 143/386 (37.05%), Query Frame = 1 
Query:   94 MASPGLY-NAAGKSTK----SKEEQDMADFLSSFDQLTADKSYS-------RISGGDGGDSNXXXXXXXPSFGTDFFFDLSSTFTGKTHGNHAGGRAAATAHSANVVSTGKLREEPDWLKEFQA--LDVNGKGDGAPPAASPSPKTTMRHATAGA--------------------GAQLQQEE---ILGLEPEILDEDLYTEVTDDGYGHNSISRP---HAATSHLSPSSDPTRSLTSIRTFD---------TNIGGGDGGNXXXXXNPSGRTDWPPTNSDTPLQTATPNTSLVVAPAEALWATGAAEAQLDWPGTLDTLGLAEPEGRPQXXXXXXXXPSSRVVPGLPVSRAAGSLTTIPPLPAKADTFPDFIDVRDPKHVSQWPK 1104
            MAS G + +  G S +    SKEEQD+ADF+SS D   +  S +       R S G GGD               F   LS     +  G  A G   A    A   +        DWL +F+   L V GK D +  AAS +      H++                        A +Q  E   +LG EP+ILD        D+GYG  + +      A    +S +++   SL    T           +   GGD GN                                   + A  +T A E  LDW GTLD +G+AE E   +        P S              L ++PP  A+   FPDF+++RDP++VSQ+PK
Sbjct:    1 MASAGSFVHGTGASEERVRQSKEEQDIADFMSSIDDTASGGSTTTSVLRGGRSSVGKGGDI--------------FLGSLSPPALQQVTGTSAAGELLADDGKAIADAF-----PADWLNDFEGIGLGVQGKTDSS--AASATATAQPIHSSPQGQXXXXXXXXXXXXXXXXQHRDATIQNNETGEVLGEEPQILDN------VDEGYGSGAAAAGMLMSAGGRMVSWAANTPASLVDAATGAFRGDAHHAVSRNAGGDLGNG----------------------------------SAAAASTDADELPLDWQGTLDMVGMAEAETDTKGTSALAVAPVSE-------------LPSLPPPAAREGGFPDFVEIRDPRNVSQFPK 312
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21188.5547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIQ7_ECTSI2.990e-626.68GRAM domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21188contigH-paniculata_contig21188:1060..2277 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1219
Cds size1125
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929563.3352797-UTR-H-paniculata_contig21188:1059..11521622929563.3352797-UTR-H-paniculata_contig21188:1059..1152Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21188 1060..1152 +
1691480915.5546813-UTR-H-paniculata_contig21188:1059..11521691480915.5546813-UTR-H-paniculata_contig21188:1059..1152Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21188 1060..1152 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929563.356407-CDS-H-paniculata_contig21188:1152..22771622929563.356407-CDS-H-paniculata_contig21188:1152..2277Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21188 1153..2277 +
1691480915.567285-CDS-H-paniculata_contig21188:1152..22771691480915.567285-CDS-H-paniculata_contig21188:1152..2277Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21188 1153..2277 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21188.5547.1prot_H-paniculata_contig21188.5547.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21188 1153..2277 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21188.5547.1

>prot_H-paniculata_contig21188.5547.1 ID=prot_H-paniculata_contig21188.5547.1|Name=mRNA_H-paniculata_contig21188.5547.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=375bp
MASPGLYNAAGKSTKSKEEQDMADFLSSFDQLTADKSYSRISGGDGGDSN
SNSNSNSPSFGTDFFFDLSSTFTGKTHGNHAGGRAAATAHSANVVSTGKL
REEPDWLKEFQALDVNGKGDGAPPAASPSPKTTMRHATAGAGAQLQQEEI
LGLEPEILDEDLYTEVTDDGYGHNSISRPHAATSHLSPSSDPTRSLTSIR
TFDTNIGGGDGGNGSGSGNPSGRTDWPPTNSDTPLQTATPNTSLVVAPAE
ALWATGAAEAQLDWPGTLDTLGLAEPEGRPQPNPNQGPGPSSRVVPGLPV
SRAAGSLTTIPPLPAKADTFPDFIDVRDPKHVSQWPKLGAPGSANDRGAG
GAGDEVPADGGSTAPPSRGGGVTKG
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mRNA from alignment at H-paniculata_contig21188:1060..2277+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21188.5547.1 ID=mRNA_H-paniculata_contig21188.5547.1|Name=mRNA_H-paniculata_contig21188.5547.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1218bp|location=Sequence derived from alignment at H-paniculata_contig21188:1060..2277+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCAACCGCATGCACCCCTGAAACGTACAGTTCCAACATCACGTCTCCCT
TGTGTTCTAGTTGGTTCCATTTCTATACATATTTCTCTCGGCGATGGCCT
CGCCCGGGTTGTACAACGCAGCAGGCAAGAGCACCAAGAGCAAAGAAGAA
CAGGACATGGCCGATTTTCTATCGTCTTTTGACCAATTGACTGCTGACAA
GTCATACTCGAGGATCAGCGGCGGCGATGGCGGCGACAGCAACAGCAACA
GCAACAGCAACTCTCCCAGCTTTGGCACTGATTTTTTCTTCGACTTGAGC
TCTACATTCACAGGAAAAACCCATGGTAACCACGCTGGCGGCAGGGCAGC
TGCTACGGCTCACTCTGCCAACGTGGTTTCCACCGGAAAACTTCGTGAGG
AGCCTGACTGGTTGAAGGAATTTCAGGCACTCGACGTCAATGGTAAGGGA
GACGGCGCACCACCGGCGGCCAGCCCATCCCCAAAAACAACCATGAGGCA
TGCTACTGCCGGTGCAGGGGCGCAGCTTCAGCAAGAGGAGATCCTAGGGC
TAGAGCCTGAAATTCTAGATGAAGACTTGTATACCGAGGTTACCGACGAC
GGGTACGGACATAATAGCATCAGCAGGCCACATGCAGCGACAAGCCATCT
ATCCCCTAGCAGTGACCCCACAAGATCCCTCACGTCAATACGCACATTTG
ACACTAACATCGGCGGTGGCGATGGCGGCAATGGTAGCGGTAGTGGGAAT
CCGTCGGGCCGAACAGATTGGCCTCCAACAAACTCGGACACGCCTCTGCA
AACGGCGACGCCGAATACTTCTCTAGTCGTCGCTCCGGCGGAAGCCTTAT
GGGCGACGGGGGCGGCAGAAGCGCAGCTGGATTGGCCTGGTACTCTCGAC
ACGCTGGGCCTGGCAGAGCCGGAAGGCCGCCCGCAGCCCAACCCTAATCA
GGGACCAGGACCATCTTCTCGCGTAGTCCCAGGACTCCCCGTGTCCAGGG
CAGCAGGGTCGCTAACCACCATACCACCCCTTCCCGCGAAGGCAGACACA
TTTCCCGACTTTATTGATGTTCGCGATCCAAAGCACGTGTCCCAGTGGCC
GAAACTGGGCGCCCCAGGGAGTGCGAACGACAGAGGCGCGGGTGGGGCGG
GAGACGAGGTTCCTGCAGACGGTGGCAGCACGGCACCGCCGTCCCGCGGA
GGGGGCGTGACGAAGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig21188:1060..2277+

>mRNA_H-paniculata_contig21188.5547.1 ID=mRNA_H-paniculata_contig21188.5547.1|Name=mRNA_H-paniculata_contig21188.5547.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2250bp|location=Sequence derived from alignment at H-paniculata_contig21188:1060..2277+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCTCGCCCGGGTTGTACAACGCAGCAGGCAAGAGCACCAAGAGCAA
AGAAGAACAGGACATGGCCGATTTTCTATCGTCTTTTGACCAATTGACTG
CTGACAAGTCATACTCGAGGATCAGCGGCGGCGATGGCGGCGACAGCAAC
AGCAACAGCAACAGCAACTCTCCCAGCTTTGGCACTGATTTTTTCTTCGA
CTTGAGCTCTACATTCACAGGAAAAACCCATGGTAACCACGCTGGCGGCA
GGGCAGCTGCTACGGCTCACTCTGCCAACGTGGTTTCCACCGGAAAACTT
CGTGAGGAGCCTGACTGGTTGAAGGAATTTCAGGCACTCGACGTCAATGG
TAAGGGAGACGGCGCACCACCGGCGGCCAGCCCATCCCCAAAAACAACCA
TGAGGCATGCTACTGCCGGTGCAGGGGCGCAGCTTCAGCAAGAGGAGATC
CTAGGGCTAGAGCCTGAAATTCTAGATGAAGACTTGTATACCGAGGTTAC
CGACGACGGGTACGGACATAATAGCATCAGCAGGCCACATGCAGCGACAA
GCCATCTATCCCCTAGCAGTGACCCCACAAGATCCCTCACGTCAATACGC
ACATTTGACACTAACATCGGCGGTGGCGATGGCGGCAATGGTAGCGGTAG
TGGGAATCCGTCGGGCCGAACAGATTGGCCTCCAACAAACTCGGACACGC
CTCTGCAAACGGCGACGCCGAATACTTCTCTAGTCGTCGCTCCGGCGGAA
GCCTTATGGGCGACGGGGGCGGCAGAAGCGCAGCTGGATTGGCCTGGTAC
TCTCGACACGCTGGGCCTGGCAGAGCCGGAAGGCCGCCCGCAGCCCAACC
CTAATCAGGGACCAGGACCATCTTCTCGCGTAGTCCCAGGACTCCCCGTG
TCCAGGGCAGCAGGGTCGCTAACCACCATACCACCCCTTCCCGCGAAGGC
AGACACATTTCCCGACTTTATTGATGTTCGCGATCCAAAGCACGTGTCCC
AGTGGCCGAAACTGGGCGCCCCAGGGAGTGCGAACGACAGAGGCGCGGGT
GGGGCGGGAGACGAGGTTCCTGCAGACGGTGGCAGCACGGCACCGCCGTC
CCGCGGAGGGGGCGTGACGAAGGGGATGGCCTCGCCCGGGTTGTACAACG
CAGCAGGCAAGAGCACCAAGAGCAAAGAAGAACAGGACATGGCCGATTTT
CTATCGTCTTTTGACCAATTGACTGCTGACAAGTCATACTCGAGGATCAG
CGGCGGCGATGGCGGCGACAGCAACAGCAACAGCAACAGCAACTCTCCCA
GCTTTGGCACTGATTTTTTCTTCGACTTGAGCTCTACATTCACAGGAAAA
ACCCATGGTAACCACGCTGGCGGCAGGGCAGCTGCTACGGCTCACTCTGC
CAACGTGGTTTCCACCGGAAAACTTCGTGAGGAGCCTGACTGGTTGAAGG
AATTTCAGGCACTCGACGTCAATGGTAAGGGAGACGGCGCACCACCGGCG
GCCAGCCCATCCCCAAAAACAACCATGAGGCATGCTACTGCCGGTGCAGG
GGCGCAGCTTCAGCAAGAGGAGATCCTAGGGCTAGAGCCTGAAATTCTAG
ATGAAGACTTGTATACCGAGGTTACCGACGACGGGTACGGACATAATAGC
ATCAGCAGGCCACATGCAGCGACAAGCCATCTATCCCCTAGCAGTGACCC
CACAAGATCCCTCACGTCAATACGCACATTTGACACTAACATCGGCGGTG
GCGATGGCGGCAATGGTAGCGGTAGTGGGAATCCGTCGGGCCGAACAGAT
TGGCCTCCAACAAACTCGGACACGCCTCTGCAAACGGCGACGCCGAATAC
TTCTCTAGTCGTCGCTCCGGCGGAAGCCTTATGGGCGACGGGGGCGGCAG
AAGCGCAGCTGGATTGGCCTGGTACTCTCGACACGCTGGGCCTGGCAGAG
CCGGAAGGCCGCCCGCAGCCCAACCCTAATCAGGGACCAGGACCATCTTC
TCGCGTAGTCCCAGGACTCCCCGTGTCCAGGGCAGCAGGGTCGCTAACCA
CCATACCACCCCTTCCCGCGAAGGCAGACACATTTCCCGACTTTATTGAT
GTTCGCGATCCAAAGCACGTGTCCCAGTGGCCGAAACTGGGCGCCCCAGG
GAGTGCGAACGACAGAGGCGCGGGTGGGGCGGGAGACGAGGTTCCTGCAG
ACGGTGGCAGCACGGCACCGCCGTCCCGCGGAGGGGGCGTGACGAAGGGG
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