mRNA_H-paniculata_contig21186.5546.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21186.5546.1
Unique NamemRNA_H-paniculata_contig21186.5546.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig21186.5546.1 vs. uniprot
Match: D7G6J0_ECTSI (CXXC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J0_ECTSI)

HSP 1 Score: 303 bits (776), Expect = 7.440e-91
Identity = 183/255 (71.76%), Postives = 204/255 (80.00%), Query Frame = 1 
Query:    1 EQKADLLQLELIAKNKKAFSSSKSAEALNTAVVEERRAAAANEARVISGKKLLSDLQRERERLKERVCLLEQEAVEAAGQQGVLSDKRAVLKTVREEWAALRSALRRRVGAARTLLLTDGACRLHAVPADRLEQPRRMDEAWRALLLLEKVYPNETQLKPFVDPAWVETVTPETILMLAHSRSYVDQLRARVDDAGSSVECLTAVDGSDDDLMGRGGSGGGEGGLYYKAERAMAVSGRDTVGNKRSWEAAMTAAG 765
            EQ ADL QLELIA   KA S+ KSA+AL TA+V ER AA AN+A V  GK+ L  L+ +RE+LK  +   E+EAV  +G+Q  L ++ A+L+ VR EWAALRSALRRRVGAARTLLLTDG CRLHAVP DRLEQPRRMDEAWRALL L+KVYPNET LK  VDPAWVE VTPET+LMLAHSR+YVDQLR RVD+AGSSVECLTAVDGS+DDL G G  GG  GG     ERAMAV GRDTVGNKRSWEAAMTAAG
Sbjct: 1416 EQVADLAQLELIAS--KALSA-KSAQALKTALVSEREAAVANKAAVSQGKERLQLLKEDREKLKAALSNKEREAVATSGRQEFLREQAAMLEGVRGEWAALRSALRRRVGAARTLLLTDGTCRLHAVPEDRLEQPRRMDEAWRALLFLQKVYPNETVLKRSVDPAWVEMVTPETMLMLAHSRTYVDQLRTRVDEAGSSVECLTAVDGSEDDLGGLG--GGDRGGAQ---ERAMAVYGRDTVGNKRSWEAAMTAAG 1662
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BLAST of mRNA_H-paniculata_contig21186.5546.1 vs. uniprot
Match: A0A6H5L3L8_9PHAE (Hist_deacetyl domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3L8_9PHAE)

HSP 1 Score: 259 bits (663), Expect = 9.250e-81
Identity = 143/185 (77.30%), Postives = 157/185 (84.86%), Query Frame = 1 
Query:  211 EQEAVEAAGQQGVLSDKRAVLKTVREEWAALRSALRRRVGAARTLLLTDGACRLHAVPADRLEQPRRMDEAWRALLLLEKVYPNETQLKPFVDPAWVETVTPETILMLAHSRSYVDQLRARVDDAGSSVECLTAVDGSDDDLMGRGGSGGGEGGLYYKAERAMAVSGRDTVGNKRSWEAAMTAAG 765
            E+EAV  +G+Q  L ++ A+L+ VR EWAALRSALRRRVGAARTLLLTD  CR+HAVP DRLEQPRRMDEAWRALL L+KVYPNET LK  VDPAWVE VTPET+LMLAHSR+YVDQLR RVD+AGSSVECLTAVDGS+DDL   GG GGG+ G     ERAMAV GRDTVGNKRSWEAAMTAAG
Sbjct:   41 EREAVATSGRQEFLREQAAMLEGVRGEWAALRSALRRRVGAARTLLLTDATCRMHAVPEDRLEQPRRMDEAWRALLFLQKVYPNETVLKRSVDPAWVEMVTPETMLMLAHSRTYVDQLRTRVDEAGSSVECLTAVDGSEDDL---GGLGGGDRG--GPQERAMAVYGRDTVGNKRSWEAAMTAAG 220
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21186.5546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6J0_ECTSI7.440e-9171.76CXXC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L3L8_9PHAE9.250e-8177.30Hist_deacetyl domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21186contigH-paniculata_contig21186:712..4313 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score312.8
Seed ortholog evalue1.5e-82
Seed eggNOG ortholog2880.D7G6J0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.NAD-dependent histone deacetylase activity (H3-K14 specific)
EggNOG OGsCOG0123@1,KOG1343@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size765
Cds size765
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21186.5546.1prot_H-paniculata_contig21186.5546.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21186 712..4313 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929563.2324212-CDS-H-paniculata_contig21186:711..9031622929563.2324212-CDS-H-paniculata_contig21186:711..903Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21186 712..903 +
1691480915.489954-CDS-H-paniculata_contig21186:711..9031691480915.489954-CDS-H-paniculata_contig21186:711..903Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21186 712..903 +
1622929563.246839-CDS-H-paniculata_contig21186:1925..21351622929563.246839-CDS-H-paniculata_contig21186:1925..2135Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21186 1926..2135 +
1691480915.502209-CDS-H-paniculata_contig21186:1925..21351691480915.502209-CDS-H-paniculata_contig21186:1925..2135Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21186 1926..2135 +
1622929563.2607472-CDS-H-paniculata_contig21186:3276..33391622929563.2607472-CDS-H-paniculata_contig21186:3276..3339Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21186 3277..3339 +
1691480915.5114815-CDS-H-paniculata_contig21186:3276..33391691480915.5114815-CDS-H-paniculata_contig21186:3276..3339Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21186 3277..3339 +
1622929563.2753937-CDS-H-paniculata_contig21186:3957..41411622929563.2753937-CDS-H-paniculata_contig21186:3957..4141Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21186 3958..4141 +
1691480915.5221786-CDS-H-paniculata_contig21186:3957..41411691480915.5221786-CDS-H-paniculata_contig21186:3957..4141Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21186 3958..4141 +
1622929563.2916448-CDS-H-paniculata_contig21186:4197..43131622929563.2916448-CDS-H-paniculata_contig21186:4197..4313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21186 4198..4313 +
1691480915.538667-CDS-H-paniculata_contig21186:4197..43131691480915.538667-CDS-H-paniculata_contig21186:4197..4313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21186 4198..4313 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21186.5546.1

>prot_H-paniculata_contig21186.5546.1 ID=prot_H-paniculata_contig21186.5546.1|Name=mRNA_H-paniculata_contig21186.5546.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=255bp
EQKADLLQLELIAKNKKAFSSSKSAEALNTAVVEERRAAAANEARVISGK
KLLSDLQRERERLKERVCLLEQEAVEAAGQQGVLSDKRAVLKTVREEWAA
LRSALRRRVGAARTLLLTDGACRLHAVPADRLEQPRRMDEAWRALLLLEK
VYPNETQLKPFVDPAWVETVTPETILMLAHSRSYVDQLRARVDDAGSSVE
CLTAVDGSDDDLMGRGGSGGGEGGLYYKAERAMAVSGRDTVGNKRSWEAA
MTAAG
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mRNA from alignment at H-paniculata_contig21186:712..4313+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21186.5546.1 ID=mRNA_H-paniculata_contig21186.5546.1|Name=mRNA_H-paniculata_contig21186.5546.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3602bp|location=Sequence derived from alignment at H-paniculata_contig21186:712..4313+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCAGAAGGCCGATCTGTTGCAGTTAGAGCTGATCGCCAAGAATAAGAA
AGCGTTTTCCAGCAGTAAGTCTGCGGAGGCCCTCAACACCGCCGTCGTGG
AGGAGAGACGAGCCGCCGCGGCGAATGAAGCGAGAGTGATAAGCGGCAAG
AAACTACTCAGCGATCTGCAGAGAGAGCGGGAGCGCCTCAAGGTGGGGAC
GGTGCTCGTGCTTGTTGTTGTTGTTGTTGTTTCCATCGTTGCTGGTCTTG
TGATCAAGAATGAAGTATTGTGAATGAAGTGAACCACAGACACGGGATAG
AGAAGTTGTTTGCCTTGCTTGCAACGTTACAGGGAATAGGGTAGGCACAT
AATTTTACTTGCCGGGGGTGTATATAGTAGTAGGCCCCGCGATCAAGGCT
TTCAGCGGAAAATAGTGCTTTTAAATCTGGAAATTTCGGGTAGAAATTGA
GAACCGACTTTTTTTTGCTAAAATTCGGAAATTCCCAAGGCTTCACAACT
GAGATAAGTCCCTTCCTTGTAATCGTCTTGCCTTGGAGAATTTTGGGTTC
TGGAAAAATCGCATCTCATGTTCCGCCCGACCTTTCCAGATTTCATCATT
TTGTAATTTTCGGCTCAAAAATGTGGTGTCCAGGAACGGCCCTTGAGAGT
ATTTTTTCGCCCATGTAATAGCGTACTTGATTTGTAGTGGGGAGGTCACG
GTAGAGCTAGTGGCGTGTGTGCCTTACATAGGTCCCTCGGGACCATCATC
ATCATGATCATCATGATCATCATGATCATCATCACCATAACCATCATCAT
AATGACCATCGTTATTATCGTGTCAAGAGTATCAACCATTTAGGAATATT
ACGTTGAACGGCCGAAACATACATTTGCTAACAACCAGTCGTGAGTAATG
GATGATGATGTATATGCCCACAAAGTACCGTCAACCAGCTTGAGAGAGAC
AGCCGATTTATTGTAGTATTAGTGCATGTCAGGTGCACAAAGGGATTTTT
TTGCTTGTTGTTGCCGTCCAAGGGTCTTTTCTCTTGGATTTTGTGTAGAA
CGAGAACGGACACACAAAACAAACATAATTTCTGTTGTCTTCGTAAAATC
GCCCAAGTAGTTAACGATCAATGCACGGCTGATCAACAGGTCCTAGGTTC
CTAAAGGGTTTCCAAGTACTCATGATGGTATATATTCTCATGTATTTTGT
TTGTTTCGTTTCAGGAGCGAGTCTGTCTGTTGGAGCAAGAAGCAGTAGAG
GCAGCAGGACAGCAAGGAGTGTTGTCTGACAAAAGAGCTGTGTTGAAGAC
TGTTCGGGAGGAGTGGGCTGCCCTCCGTAGCGCTCTTCGGCGAAGGGTCG
GGGCTGCTCGAACCTTGCTCTTGACGGATGGTGCGTGTCGGCTGCACGCG
GTGCCTGCTGACAGGCTTGAGCAGGTGTGTGTGGCTGGGTGACTGGGTGA
AGGCGTGTTGCGTTGCGATGTTCATGGATAGACCGTCCGCGGTGAAAGGG
CGACGTGCTTTACCGCCTTTGTTTGCCCTCAATGTTACCGTGGTTTTGTT
GTACATATATCTCTCACTGTTTTACCATTTCAAGAACTAGTTAGCAATGT
CATCAATAACCAGAAGAAAATCAAGACATGTGTGTGTGCTGCGCGCTGTG
TATGCTCACAGGGCTGAAAAGGTAAGGCAGGGGGGGGCGTACGGATGTGT
ACGTTTGTTTTCTGTTAGTAGTGGCTGTCCGGGGTGTGTCTCTGTCTGTG
TGTCTGTGTCTTTGTGTGTCTGTATCTTTGTGTGTCTGTGTCTTTGTGTG
TCTGTGTCTTTGTGTGTCTGTGTCTTTGTGTGTCTGTGTCTCTGTGTGTG
TTTTCAATGTCGGTGAAGAGGGTGGAGGCTTACAGTCTTGTTTGACGATA
TGAAAGCCTAAGTTTTTTCGGGTTTTCATATTTTTGCTCTTTTGGTCATA
GCTTCATTTTTTGTCTAATGGTTTTGCCTTTGTTACTTTATTATGACTGC
CAGGCAGATTTTCACACTATTCGGTGTATCATGCATGTGTCATGTGTCAT
GTGTCATGTGTCATGTATCATGTGTCATGTGTCATGTGTCATTTATCATG
TATGATGTGTCATGATGTGTCATGTGTCATGTATGATGTGTCATGTATGA
TGTGTCATGTATGATGTGTCATGTATGATGTGTCATGTATGATGTGTCAT
GTATGATGTGTCATGTATGATGTGTCATGTATGATGTGTCATGTATGATG
TGTCATATATGATATGTCATGTGTCATGTATGATGTATGATGTGTCATGT
GTCATGTATGATGTGTCATGTGTCGCGTGTCATGTGTCCTGTATCCTACA
TATATTGTTCTTTTACGCGGTGAACGCCTTGTGAGTGCTAGTGATGACTG
TGTGTATGTGGCGGGGATTTTCATGGCCGTGGGCATCATGTGTAGAGCTT
GTATTTGTTGGGTTGATGCCATGTATTCGTTTAGCGTCCCTTGTCAATTG
AAAATCCACGACTTTGTTTTTCGTGGTTACTCGCACTTTGGGTGCTATTT
AATGTGTTGAACCAGCCTCGCAGGATGGATGAGGCATGGCGCGCGCTGCT
GTTGTTGGAGAAGGTGTACCCGAACGAGGTCAGTGTTCTTTTTGTGATAA
TAGTGTTCCACGTATCTACATTCCTTCACCCTTGGCGAATTTTTTGTCAT
ATTGTCTTTTATCAATCGTTAAACGGTTAAAAAAACTGCCGAGTGTATAA
TCTCTTCATCTGTATGCCCGATTTTGTGTTTTTTTTCCGATGGCTTTTTT
CTGCTCTATGATGCACTGTTTCCTGTTATATGACTATCAAACTTGACTTT
CCAACAATTCCCCCCCTTCCCCGTATTTGGTCTTCAGTGTGACTTCATTT
TTTACTCCATAACATTAGTCATCATCCAGCATATGACTACAAATGATAAT
GACTATACTAAGAACTGTACAATGTGACAAGTACAGAAGCGGGTTAACGG
ATATCGGTGGATCCGGAGGTCAGGCGGGCATGTTTATCCCCCATTTGCTG
TCTTATGTATCATCACAAGCTTCAACAGTTGTCCCGCAAATTCGGCTTTT
CGACTGTATCTGCTGGTTTTGAGAAATGTACAGGAATGAAACGTTAAATG
AAACACAAGCAGTAAATATTCGACATACGAGAATATGACAAGCTCTCCCG
TCTCCGGCCGTCCTCTGTCCGCCTCTATTTTAACACCAACCCACAGACCC
AGCTGAAGCCATTCGTGGATCCCGCATGGGTGGAAACCGTCACACCCGAG
ACCATCCTCATGCTGGCCCACAGCCGGTCCTATGTGGACCAGCTCAGGGC
GAGGGTCGATGATGCGGGCTCGAGCGTGGAGTGCCTGACCGCCGTCGATG
GCAGTGATGACGATCTCATGGGACGCGGGGGTGAAGCGGCAGCGGCGGCG
GCAGCGGCGGCGGCAGCGGGGGGGGGGGGGGTGGAGGGAGCGGGGGGGGC
GAGGGGGGGCTGTACTATAAAGCCGAAAGAGCGATGGCTGTATCGGGGAG
AGACACTGTGGGCAACAAGAGGTCGTGGGAGGCTGCCATGACTGCCGCGG
GT
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Coding sequence (CDS) from alignment at H-paniculata_contig21186:712..4313+

>mRNA_H-paniculata_contig21186.5546.1 ID=mRNA_H-paniculata_contig21186.5546.1|Name=mRNA_H-paniculata_contig21186.5546.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1530bp|location=Sequence derived from alignment at H-paniculata_contig21186:712..4313+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCAGAAGGCCGATCTGTTGCAGTTAGAGCTGATCGCCAAGAATAAGAA
AGCGTTTTCCAGCAGTAAGTCTGCGGAGGCCCTCAACACCGCCGTCGTGG
AGGAGAGACGAGCCGCCGCGGCGAATGAAGCGAGAGTGATAAGCGGCAAG
AAACTACTCAGCGATCTGCAGAGAGAGCGGGAGCGCCTCAAGGAGCAGAA
GGCCGATCTGTTGCAGTTAGAGCTGATCGCCAAGAATAAGAAAGCGTTTT
CCAGCAGTAAGTCTGCGGAGGCCCTCAACACCGCCGTCGTGGAGGAGAGA
CGAGCCGCCGCGGCGAATGAAGCGAGAGTGATAAGCGGCAAGAAACTACT
CAGCGATCTGCAGAGAGAGCGGGAGCGCCTCAAGGAGCGAGTCTGTCTGT
TGGAGCAAGAAGCAGTAGAGGCAGCAGGACAGCAAGGAGTGTTGTCTGAC
AAAAGAGCTGTGTTGAAGACTGTTCGGGAGGAGTGGGCTGCCCTCCGTAG
CGCTCTTCGGCGAAGGGTCGGGGCTGCTCGAACCTTGCTCTTGACGGATG
GTGCGTGTCGGCTGCACGCGGTGCCTGCTGACAGGCTTGAGCAGGAGCGA
GTCTGTCTGTTGGAGCAAGAAGCAGTAGAGGCAGCAGGACAGCAAGGAGT
GTTGTCTGACAAAAGAGCTGTGTTGAAGACTGTTCGGGAGGAGTGGGCTG
CCCTCCGTAGCGCTCTTCGGCGAAGGGTCGGGGCTGCTCGAACCTTGCTC
TTGACGGATGGTGCGTGTCGGCTGCACGCGGTGCCTGCTGACAGGCTTGA
GCAGCCTCGCAGGATGGATGAGGCATGGCGCGCGCTGCTGTTGTTGGAGA
AGGTGTACCCGAACGAGCCTCGCAGGATGGATGAGGCATGGCGCGCGCTG
CTGTTGTTGGAGAAGGTGTACCCGAACGAGACCCAGCTGAAGCCATTCGT
GGATCCCGCATGGGTGGAAACCGTCACACCCGAGACCATCCTCATGCTGG
CCCACAGCCGGTCCTATGTGGACCAGCTCAGGGCGAGGGTCGATGATGCG
GGCTCGAGCGTGGAGTGCCTGACCGCCGTCGATGGCAGTGATGACGATCT
CATGGGACGCGGGGACCCAGCTGAAGCCATTCGTGGATCCCGCATGGGTG
GAAACCGTCACACCCGAGACCATCCTCATGCTGGCCCACAGCCGGTCCTA
TGTGGACCAGCTCAGGGCGAGGGTCGATGATGCGGGCTCGAGCGTGGAGT
GCCTGACCGCCGTCGATGGCAGTGATGACGATCTCATGGGACGCGGGGGG
AGCGGGGGGGGCGAGGGGGGGCTGTACTATAAAGCCGAAAGAGCGATGGC
TGTATCGGGGAGAGACACTGTGGGCAACAAGAGGTCGTGGGAGGCTGCCA
TGACTGCCGCGGGTGGAGCGGGGGGGGCGAGGGGGGGCTGTACTATAAAG
CCGAAAGAGCGATGGCTGTATCGGGGAGAGACACTGTGGGCAACAAGAGG
TCGTGGGAGGCTGCCATGACTGCCGCGGGT
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