mRNA_H-paniculata_contig2117.5542.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2117.5542.1
Unique NamemRNA_H-paniculata_contig2117.5542.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2117.5542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2117contigH-paniculata_contig2117:1038..1516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size479
Cds size456
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929562.7302246-UTR-H-paniculata_contig2117:1037..10601622929562.7302246-UTR-H-paniculata_contig2117:1037..1060Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2117 1038..1060 +
1691480915.2415574-UTR-H-paniculata_contig2117:1037..10601691480915.2415574-UTR-H-paniculata_contig2117:1037..1060Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2117 1038..1060 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929562.7429879-CDS-H-paniculata_contig2117:1060..15161622929562.7429879-CDS-H-paniculata_contig2117:1060..1516Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2117 1061..1516 +
1691480915.2496343-CDS-H-paniculata_contig2117:1060..15161691480915.2496343-CDS-H-paniculata_contig2117:1060..1516Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2117 1061..1516 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2117.5542.1prot_H-paniculata_contig2117.5542.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2117 1061..1516 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2117.5542.1

>prot_H-paniculata_contig2117.5542.1 ID=prot_H-paniculata_contig2117.5542.1|Name=mRNA_H-paniculata_contig2117.5542.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=152bp
MQVSRPRLKEASVPNTLQVPLLDSCTIAGCTKPRTKACVRRCAGWGKGGR
RKRGEMESTTAHYRIESNGASEPTHSMYTVDDYRLPCAYILCQKYCEFLV
ANAVPCSCKRAIHDCPIRSKRYPSIRTSAFSSYPVLPSNRSRPRPLDVAT
GP
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mRNA from alignment at H-paniculata_contig2117:1038..1516+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2117.5542.1 ID=mRNA_H-paniculata_contig2117.5542.1|Name=mRNA_H-paniculata_contig2117.5542.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=479bp|location=Sequence derived from alignment at H-paniculata_contig2117:1038..1516+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAATGATGCCGCGGGGGAGAACATGCAAGTTTCTCGCCCTCGCCTCAAG
GAAGCTTCCGTGCCGAACACCTTGCAAGTACCCCTCCTCGATAGTTGCAC
AATCGCGGGGTGCACAAAACCAAGAACGAAGGCATGTGTCCGCCGCTGCG
CAGGTTGGGGGAAGGGAGGACGAAGGAAACGGGGCGAAATGGAGAGCACT
ACTGCGCACTACCGCATTGAAAGCAATGGGGCAAGTGAGCCGACACATTC
AATGTACACCGTAGACGATTACAGATTGCCGTGTGCATATATCCTTTGCC
AAAAATACTGCGAGTTCCTAGTCGCCAATGCCGTACCGTGTTCTTGCAAA
AGGGCGATACACGACTGTCCGATACGCTCCAAAAGGTATCCTTCAATACG
CACGAGCGCGTTCTCATCGTACCCCGTCCTCCCTTCAAATCGCTCACGCC
CCCGTCCCCTGGATGTCGCAACCGGTCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig2117:1038..1516+

>mRNA_H-paniculata_contig2117.5542.1 ID=mRNA_H-paniculata_contig2117.5542.1|Name=mRNA_H-paniculata_contig2117.5542.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at H-paniculata_contig2117:1038..1516+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAGTTTCTCGCCCTCGCCTCAAGGAAGCTTCCGTGCCGAACACCTT
GCAAGTACCCCTCCTCGATAGTTGCACAATCGCGGGGTGCACAAAACCAA
GAACGAAGGCATGTGTCCGCCGCTGCGCAGGTTGGGGGAAGGGAGGACGA
AGGAAACGGGGCGAAATGGAGAGCACTACTGCGCACTACCGCATTGAAAG
CAATGGGGCAAGTGAGCCGACACATTCAATGTACACCGTAGACGATTACA
GATTGCCGTGTGCATATATCCTTTGCCAAAAATACTGCGAGTTCCTAGTC
GCCAATGCCGTACCGTGTTCTTGCAAAAGGGCGATACACGACTGTCCGAT
ACGCTCCAAAAGGTATCCTTCAATACGCACGAGCGCGTTCTCATCGTACC
CCGTCCTCCCTTCAAATCGCTCACGCCCCCGTCCCCTGGATGTCGCAACC
GGTCCCATGCAAGTTTCTCGCCCTCGCCTCAAGGAAGCTTCCGTGCCGAA
CACCTTGCAAGTACCCCTCCTCGATAGTTGCACAATCGCGGGGTGCACAA
AACCAAGAACGAAGGCATGTGTCCGCCGCTGCGCAGGTTGGGGGAAGGGA
GGACGAAGGAAACGGGGCGAAATGGAGAGCACTACTGCGCACTACCGCAT
TGAAAGCAATGGGGCAAGTGAGCCGACACATTCAATGTACACCGTAGACG
ATTACAGATTGCCGTGTGCATATATCCTTTGCCAAAAATACTGCGAGTTC
CTAGTCGCCAATGCCGTACCGTGTTCTTGCAAAAGGGCGATACACGACTG
TCCGATACGCTCCAAAAGGTATCCTTCAATACGCACGAGCGCGTTCTCAT
CGTACCCCGTCCTCCCTTCAAATCGCTCACGCCCCCGTCCCCTGGATGTC
GCAACCGGTCCC
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