mRNA_H-paniculata_contig21159.5538.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21159.5538.1
Unique NamemRNA_H-paniculata_contig21159.5538.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig21159.5538.1 vs. uniprot
Match: D8LNZ4_ECTSI (Pyridoxal phosphate homeostasis protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNZ4_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 5.980e-14
Identity = 41/56 (73.21%), Postives = 45/56 (80.36%), Query Frame = 3 
Query:  345 IRENLEIVRKRVAEVTAEEVHGGRAAPRLVAVSKTKPIEDLQAAYDAGQRIFGENY 512
            I +NLE VRKRV EVT E    G+  PRLVAVSKTKP+E+LQ AYDAGQRIFGENY
Sbjct:   18 IADNLEAVRKRVEEVTGEG-EAGKPVPRLVAVSKTKPLENLQDAYDAGQRIFGENY 72
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BLAST of mRNA_H-paniculata_contig21159.5538.1 vs. uniprot
Match: A0A835YW12_9STRA (Pyridoxal phosphate homeostasis protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW12_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 6.220e-11
Identity = 38/57 (66.67%), Postives = 43/57 (75.44%), Query Frame = 3 
Query:  345 IRENLEIVRKRVAEVTAEEVHGGRAAPRLVAVSKTKPIEDLQAAYDAGQRIFGENYV 515
            I+  LE V++RVA  +AE   G   A RLVAVSKTKP+ DL AAYDAGQRIFGENYV
Sbjct:   12 IKAALESVKQRVAAASAER--GSAHATRLVAVSKTKPVSDLMAAYDAGQRIFGENYV 66
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BLAST of mRNA_H-paniculata_contig21159.5538.1 vs. uniprot
Match: A0A137P424_CONC2 (Pyridoxal phosphate homeostasis protein n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137P424_CONC2)

HSP 1 Score: 68.6 bits (166), Expect = 3.040e-10
Identity = 41/84 (48.81%), Postives = 55/84 (65.48%), Query Frame = 3 
Query:  345 IRENLEIVRKRVAEVTAEEVHGGRAAPRLVAVSKTKPIEDLQAAYDAGQRIFGENYVGAPSLYKSKRLCATVGANYLHDQQDGR 596
            +++NL  V+ RV +  A EV  G+  PRLVAVSKTKP+EDL AAYD GQR FGENYV    + KS++L   +  +Y+   Q  +
Sbjct:    9 VQDNLNEVKLRVNK--ASEV-SGKPLPRLVAVSKTKPVEDLLAAYDLGQRHFGENYV-QELIEKSEKLPKDINWHYIGALQSNK 88
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BLAST of mRNA_H-paniculata_contig21159.5538.1 vs. uniprot
Match: K3WAQ7_GLOUD (Pyridoxal phosphate homeostasis protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WAQ7_GLOUD)

HSP 1 Score: 65.5 bits (158), Expect = 3.770e-9
Identity = 39/89 (43.82%), Postives = 55/89 (61.80%), Query Frame = 3 
Query:  330 AKSVSIRENLEIVRKRVAEVTAEEVHGGRAAPRLVAVSKTKPIEDLQAAYDAGQRIFGENYVGAPSLYKSKRLCATVGANYLHDQQDGR 596
            A S S+  NL++VR++VA+  A+     +    LVAVSKTKPIEDLQAAY+  QR FGENY+    + K+  L + V  +Y+   Q  +
Sbjct:    2 ASSASVVRNLQVVREKVAQAVAKSAWKQQCT--LVAVSKTKPIEDLQAAYEHEQRHFGENYI-QELIQKTSLLPSDVKWHYIGHVQSNK 87
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BLAST of mRNA_H-paniculata_contig21159.5538.1 vs. uniprot
Match: A0A024GCZ5_9STRA (Pyridoxal phosphate homeostasis protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GCZ5_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 5.300e-9
Identity = 39/85 (45.88%), Postives = 52/85 (61.18%), Query Frame = 3 
Query:  342 SIRENLEIVRKRVAEVTAEEVHGGRAAPRLVAVSKTKPIEDLQAAYDAGQRIFGENYVGAPSLYKSKRLCATVGANYLHDQQDGR 596
            +I  NL+ VRK VA+  A+ V+  +    LVAVSKTKPIEDLQAAYD  QR FGENY+    + K+  L   +  +Y+   Q  +
Sbjct:    5 NIARNLDAVRKTVADALAKRVN--KQTCTLVAVSKTKPIEDLQAAYDHHQRHFGENYI-QELIQKASELPKDIFWHYIGHVQSNK 86
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BLAST of mRNA_H-paniculata_contig21159.5538.1 vs. uniprot
Match: A0A0K6IQS6_9GAMM (Pyridoxal phosphate homeostasis protein n=1 Tax=Marinomonas fungiae TaxID=1137284 RepID=A0A0K6IQS6_9GAMM)

HSP 1 Score: 63.9 bits (154), Expect = 1.200e-8
Identity = 32/59 (54.24%), Postives = 43/59 (72.88%), Query Frame = 3 
Query:  339 VSIRENLEIVRKRVAEVTAEEVHGGRAAPRLVAVSKTKPIEDLQAAYDAGQRIFGENYV 515
            +S+ +NL+ VR  +AE+T        +  RL+AVSKTKP+ED+ AAY AGQR+FGENYV
Sbjct:    1 MSVADNLQEVRCEIAEITQRFARPAESV-RLLAVSKTKPVEDILAAYAAGQRLFGENYV 58
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BLAST of mRNA_H-paniculata_contig21159.5538.1 vs. uniprot
Match: A0A3D1R366_9DELT (Pyridoxal phosphate homeostasis protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A3D1R366_9DELT)

HSP 1 Score: 63.9 bits (154), Expect = 1.260e-8
Identity = 41/82 (50.00%), Postives = 51/82 (62.20%), Query Frame = 3 
Query:  339 VSIRENLEIVRKRVAEVTAEEVHGGRA--APRLVAVSKTKPIEDLQAAYDAGQRIFGENYVGAPSLYKSKRLCATVGANYLH 578
            +SIRENL+ VR+R+    A     GRA  A RLVAVSKT+P E ++ AY+AGQR+FGENY  A  L     L A +    LH
Sbjct:    1 MSIRENLQKVRERIETAAAR---AGRAPGAVRLVAVSKTQPAEAVREAYEAGQRLFGENY--AQELRDKANLLADLPDLQLH 77
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BLAST of mRNA_H-paniculata_contig21159.5538.1 vs. uniprot
Match: A0A139AH93_GONPJ (Pyridoxal phosphate homeostasis protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AH93_GONPJ)

HSP 1 Score: 63.2 bits (152), Expect = 2.290e-8
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 3 
Query:  345 IRENLEIVRKRVAEVTAEEVHGGRAAPRLVAVSKTKPIEDLQAAYDAGQRIFGENYV 515
            I EN+  V++++ + +A    G +  PRLVAVSKTKP ED++AAYD GQR FGENYV
Sbjct:    4 IAENIRDVQEKIVKASA----GKQPIPRLVAVSKTKPAEDVKAAYDVGQRHFGENYV 56
[Close]
BLAST of mRNA_H-paniculata_contig21159.5538.1 vs. uniprot
Match: A0A1Q9F391_SYMMI (Proline synthase co-transcribed bacterial-like protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9F391_SYMMI)

HSP 1 Score: 61.2 bits (147), Expect = 2.440e-8
Identity = 41/89 (46.07%), Postives = 52/89 (58.43%), Query Frame = 3 
Query:  339 VSIRENLEIVRKRV--AEVTAEEVHGGRAAP-RLVAVSKTKPIEDLQAAYDAGQRIFGENYVGAPSLYKSKRLCATVGANYLHDQQDGR 596
            + I E L  V+ +V  A  T    H    AP RLVAVSKTKP+EDL+ AYDAG R FGENYV    + KS +L A V  +++   Q  +
Sbjct:    1 MGIPEQLRAVQDKVQAAAATRAATHKTAEAPVRLVAVSKTKPVEDLKEAYDAGHRHFGENYV-QELVDKSPQLPADVQWHFIGHLQGNK 88
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BLAST of mRNA_H-paniculata_contig21159.5538.1 vs. uniprot
Match: A0A662XEE5_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XEE5_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 3.530e-8
Identity = 36/69 (52.17%), Postives = 42/69 (60.87%), Query Frame = 3 
Query:  345 IRENLEIVRKRVAEVTAEEVHGGRAAPRLVAVSKTKPIEDLQAAYDAGQRIFGENYVGAPSLYKSKRLC 551
            +  NL+ VR +VAE  A+     +    LVAVSKTKP+EDLQ AYDA QR FGENYV     Y    LC
Sbjct:  253 VARNLQAVRAKVAEAVAKSAWKQQCT--LVAVSKTKPVEDLQEAYDADQRHFGENYVRPIVRYIIAALC 319
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21159.5538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNZ4_ECTSI5.980e-1473.21Pyridoxal phosphate homeostasis protein n=1 Tax=Ec... [more]
A0A835YW12_9STRA6.220e-1166.67Pyridoxal phosphate homeostasis protein n=1 Tax=Tr... [more]
A0A137P424_CONC23.040e-1048.81Pyridoxal phosphate homeostasis protein n=1 Tax=Co... [more]
K3WAQ7_GLOUD3.770e-943.82Pyridoxal phosphate homeostasis protein n=1 Tax=Gl... [more]
A0A024GCZ5_9STRA5.300e-945.88Pyridoxal phosphate homeostasis protein n=1 Tax=Al... [more]
A0A0K6IQS6_9GAMM1.200e-854.24Pyridoxal phosphate homeostasis protein n=1 Tax=Ma... [more]
A0A3D1R366_9DELT1.260e-850.00Pyridoxal phosphate homeostasis protein n=1 Tax=My... [more]
A0A139AH93_GONPJ2.290e-856.14Pyridoxal phosphate homeostasis protein n=1 Tax=Go... [more]
A0A1Q9F391_SYMMI2.440e-846.07Proline synthase co-transcribed bacterial-like pro... [more]
A0A662XEE5_9STRA3.530e-852.17Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21159contigH-paniculata_contig21159:3710..4433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.2
Seed ortholog evalue4.4e-12
Seed eggNOG ortholog2880.D8LNZ4
Preferred namePROSC
KEGG rclassRC00553
KEGG koko:K01469,ko:K06997
KEGG ReactionR00251
KEGG Pathwayko00480,map00480
Hectar predicted targeting categorymitochondrion
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006522,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009078,GO:0009987,GO:0010467,GO:0019538,GO:0019752,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044464,GO:0048037,GO:0050662,GO:0051604,GO:0070279,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901605
EggNOG free text desc.pyridoxal phosphate binding
EggNOG OGsCOG0325@1,KOG3157@2759
EC3.5.2.9
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size724
Cds size543
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21159.5538.1prot_H-paniculata_contig21159.5538.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21159 3775..4317 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929562.384403-UTR-H-paniculata_contig21159:3709..37741622929562.384403-UTR-H-paniculata_contig21159:3709..3774Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21159 3710..3774 +
1691480915.0801096-UTR-H-paniculata_contig21159:3709..37741691480915.0801096-UTR-H-paniculata_contig21159:3709..3774Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21159 3710..3774 +
1622929562.412386-UTR-H-paniculata_contig21159:4317..44331622929562.412386-UTR-H-paniculata_contig21159:4317..4433Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21159 4318..4433 +
1691480915.1110475-UTR-H-paniculata_contig21159:4317..44331691480915.1110475-UTR-H-paniculata_contig21159:4317..4433Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21159 4318..4433 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929562.3954566-CDS-H-paniculata_contig21159:3774..43171622929562.3954566-CDS-H-paniculata_contig21159:3774..4317Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21159 3775..4317 +
1691480915.0998085-CDS-H-paniculata_contig21159:3774..43171691480915.0998085-CDS-H-paniculata_contig21159:3774..4317Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21159 3775..4317 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21159.5538.1

>prot_H-paniculata_contig21159.5538.1 ID=prot_H-paniculata_contig21159.5538.1|Name=mRNA_H-paniculata_contig21159.5538.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=181bp
MISRVSLLGRSAASVASLISNNCNCNTNLTAFAFFPFPGSCAQPDIVSKA
PPRVSRLYSLTLRHISTSSVTSMSAASENQAVDLKEDTAKSVSIRENLEI
VRKRVAEVTAEEVHGGRAAPRLVAVSKTKPIEDLQAAYDAGQRIFGENYV
GAPSLYKSKRLCATVGANYLHDQQDGRRSC*
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mRNA from alignment at H-paniculata_contig21159:3710..4433+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21159.5538.1 ID=mRNA_H-paniculata_contig21159.5538.1|Name=mRNA_H-paniculata_contig21159.5538.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=724bp|location=Sequence derived from alignment at H-paniculata_contig21159:3710..4433+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTGCTGCTGCTGTTTTCTTCTATTGCAACTCTATTTGAACAGAACCTGG
AGGTCGAGAGACCTCATGATATCACGTGTATCGCTTCTGGGTCGCTCGGC
CGCATCTGTTGCCTCACTCATCAGCAACAACTGCAACTGCAACACCAATT
TGACTGCGTTTGCCTTTTTTCCCTTCCCCGGCAGCTGTGCCCAGCCAGAC
ATAGTATCCAAAGCCCCGCCGCGCGTCTCAAGGTTATACTCGCTGACGCT
GAGGCACATCTCGACATCGAGTGTAACATCTATGTCGGCGGCGTCGGAAA
ATCAAGCGGTGGACTTGAAGGAGGACACAGCTAAGTCAGTTTCCATTAGG
GAAAATTTGGAGATTGTGCGCAAGCGTGTCGCGGAGGTGACCGCGGAGGA
GGTCCATGGAGGGAGGGCTGCGCCGCGGCTGGTAGCAGTTAGTAAGACGA
AGCCAATCGAGGATCTCCAGGCGGCGTACGATGCCGGACAGAGGATCTTC
GGAGAGAATTACGTGGGTGCACCCTCATTGTACAAGTCGAAGCGTTTGTG
TGCCACCGTTGGTGCTAACTATTTACATGATCAGCAGGACGGTCGAAGGT
CATGTTGATGTTGGGTTGTTTCTTTTTTTAATCCCCGAAAGGCTGAGGCA
AAACCTTTTTTTCCGCTGCTTCCATATGCAGGTATTCATCCCAACATGTC
TACATTTCCTTTAACAGAACAGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig21159:3710..4433+

>mRNA_H-paniculata_contig21159.5538.1 ID=mRNA_H-paniculata_contig21159.5538.1|Name=mRNA_H-paniculata_contig21159.5538.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1086bp|location=Sequence derived from alignment at H-paniculata_contig21159:3710..4433+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATATCACGTGTATCGCTTCTGGGTCGCTCGGCCGCATCTGTTGCCTC
ACTCATCAGCAACAACTGCAACTGCAACACCAATTTGACTGCGTTTGCCT
TTTTTCCCTTCCCCGGCAGCTGTGCCCAGCCAGACATAGTATCCAAAGCC
CCGCCGCGCGTCTCAAGGTTATACTCGCTGACGCTGAGGCACATCTCGAC
ATCGAGTGTAACATCTATGTCGGCGGCGTCGGAAAATCAAGCGGTGGACT
TGAAGGAGGACACAGCTAAGTCAGTTTCCATTAGGGAAAATTTGGAGATT
GTGCGCAAGCGTGTCGCGGAGGTGACCGCGGAGGAGGTCCATGGAGGGAG
GGCTGCGCCGCGGCTGGTAGCAGTTAGTAAGACGAAGCCAATCGAGGATC
TCCAGGCGGCGTACGATGCCGGACAGAGGATCTTCGGAGAGAATTACGTG
GGTGCACCCTCATTGTACAAGTCGAAGCGTTTGTGTGCCACCGTTGGTGC
TAACTATTTACATGATCAGCAGGACGGTCGAAGGTCATGTTGAATGATAT
CACGTGTATCGCTTCTGGGTCGCTCGGCCGCATCTGTTGCCTCACTCATC
AGCAACAACTGCAACTGCAACACCAATTTGACTGCGTTTGCCTTTTTTCC
CTTCCCCGGCAGCTGTGCCCAGCCAGACATAGTATCCAAAGCCCCGCCGC
GCGTCTCAAGGTTATACTCGCTGACGCTGAGGCACATCTCGACATCGAGT
GTAACATCTATGTCGGCGGCGTCGGAAAATCAAGCGGTGGACTTGAAGGA
GGACACAGCTAAGTCAGTTTCCATTAGGGAAAATTTGGAGATTGTGCGCA
AGCGTGTCGCGGAGGTGACCGCGGAGGAGGTCCATGGAGGGAGGGCTGCG
CCGCGGCTGGTAGCAGTTAGTAAGACGAAGCCAATCGAGGATCTCCAGGC
GGCGTACGATGCCGGACAGAGGATCTTCGGAGAGAATTACGTGGGTGCAC
CCTCATTGTACAAGTCGAAGCGTTTGTGTGCCACCGTTGGTGCTAACTAT
TTACATGATCAGCAGGACGGTCGAAGGTCATGTTGA
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