mRNA_H-paniculata_contig21156.5535.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21156.5535.1
Unique NamemRNA_H-paniculata_contig21156.5535.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21156.5535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21156contigH-paniculata_contig21156:2253..2938 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size686
Cds size501
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21156.5535.1prot_H-paniculata_contig21156.5535.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21156 2366..2866 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929562.1332223-UTR-H-paniculata_contig21156:2252..23651622929562.1332223-UTR-H-paniculata_contig21156:2252..2365Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21156 2253..2365 +
1691480914.973699-UTR-H-paniculata_contig21156:2252..23651691480914.973699-UTR-H-paniculata_contig21156:2252..2365Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21156 2253..2365 +
1622929562.1638348-UTR-H-paniculata_contig21156:2866..29381622929562.1638348-UTR-H-paniculata_contig21156:2866..2938Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21156 2867..2938 +
1691480914.992305-UTR-H-paniculata_contig21156:2866..29381691480914.992305-UTR-H-paniculata_contig21156:2866..2938Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21156 2867..2938 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929562.1481168-CDS-H-paniculata_contig21156:2365..28661622929562.1481168-CDS-H-paniculata_contig21156:2365..2866Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21156 2366..2866 +
1691480914.982955-CDS-H-paniculata_contig21156:2365..28661691480914.982955-CDS-H-paniculata_contig21156:2365..2866Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21156 2366..2866 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21156.5535.1

>prot_H-paniculata_contig21156.5535.1 ID=prot_H-paniculata_contig21156.5535.1|Name=mRNA_H-paniculata_contig21156.5535.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=167bp
MPGSTFATPPSVASRSRRALMADIAVVVDTWLSLESIDSIVAVAVDAIAV
ASVTPRSVLSCAFDQTPVRLIAEYDRIPVECVTNASDLVMNRAAKRVTGV
HNKSMILMIPLLLLPTSVDCGYYWLLNCLLCMFPLPSLSFSRRLSPLWFR
KRTGAMTEILVAASRG*
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mRNA from alignment at H-paniculata_contig21156:2253..2938+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21156.5535.1 ID=mRNA_H-paniculata_contig21156.5535.1|Name=mRNA_H-paniculata_contig21156.5535.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=686bp|location=Sequence derived from alignment at H-paniculata_contig21156:2253..2938+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTAGACTGCTGTTGCTGCCCCAGCAGTGAGTATTCGCAAGTCCGCTCCCT
GCCTTCTCTTCGAACCCCTTCGTCGACGACAGTAGCACCAGCGGCCTACG
GTTGTGGGCGTTGATGCCCGGGTCGACTTTCGCAACTCCGCCGAGCGTGG
CCAGCCGTTCTCGGCGAGCCCTCATGGCTGACATCGCCGTCGTCGTTGAC
ACGTGGTTGTCCTTGGAAAGCATCGATTCTATTGTTGCTGTTGCTGTTGA
TGCTATTGCTGTTGCTTCTGTTACACCAAGAAGCGTGTTGTCGTGTGCAT
TCGACCAAACGCCCGTGCGGCTTATCGCCGAGTACGATCGTATCCCAGTA
GAGTGCGTGACAAATGCCTCCGACCTCGTGATGAATAGAGCAGCCAAGAG
AGTTACTGGTGTCCACAACAAAAGCATGATCCTCATGATTCCTCTCCTGC
TGCTGCCCACAAGTGTTGACTGTGGTTACTATTGGCTTTTGAATTGCCTG
CTTTGTATGTTTCCACTCCCTTCTCTATCCTTCAGCAGACGACTTTCTCC
GCTCTGGTTCCGGAAGCGAACCGGAGCGATGACTGAGATACTGGTCGCCG
CGAGCCGAGGCTAAAACTAGCTCTCTCTCGGCTGTCTTTTGTACTAGCCC
TCCATTGATAATGGTAGTCAAATAGTACGGTCAGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig21156:2253..2938+

>mRNA_H-paniculata_contig21156.5535.1 ID=mRNA_H-paniculata_contig21156.5535.1|Name=mRNA_H-paniculata_contig21156.5535.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1002bp|location=Sequence derived from alignment at H-paniculata_contig21156:2253..2938+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCGGGTCGACTTTCGCAACTCCGCCGAGCGTGGCCAGCCGTTCTCG
GCGAGCCCTCATGGCTGACATCGCCGTCGTCGTTGACACGTGGTTGTCCT
TGGAAAGCATCGATTCTATTGTTGCTGTTGCTGTTGATGCTATTGCTGTT
GCTTCTGTTACACCAAGAAGCGTGTTGTCGTGTGCATTCGACCAAACGCC
CGTGCGGCTTATCGCCGAGTACGATCGTATCCCAGTAGAGTGCGTGACAA
ATGCCTCCGACCTCGTGATGAATAGAGCAGCCAAGAGAGTTACTGGTGTC
CACAACAAAAGCATGATCCTCATGATTCCTCTCCTGCTGCTGCCCACAAG
TGTTGACTGTGGTTACTATTGGCTTTTGAATTGCCTGCTTTGTATGTTTC
CACTCCCTTCTCTATCCTTCAGCAGACGACTTTCTCCGCTCTGGTTCCGG
AAGCGAACCGGAGCGATGACTGAGATACTGGTCGCCGCGAGCCGAGGCTA
AATGCCCGGGTCGACTTTCGCAACTCCGCCGAGCGTGGCCAGCCGTTCTC
GGCGAGCCCTCATGGCTGACATCGCCGTCGTCGTTGACACGTGGTTGTCC
TTGGAAAGCATCGATTCTATTGTTGCTGTTGCTGTTGATGCTATTGCTGT
TGCTTCTGTTACACCAAGAAGCGTGTTGTCGTGTGCATTCGACCAAACGC
CCGTGCGGCTTATCGCCGAGTACGATCGTATCCCAGTAGAGTGCGTGACA
AATGCCTCCGACCTCGTGATGAATAGAGCAGCCAAGAGAGTTACTGGTGT
CCACAACAAAAGCATGATCCTCATGATTCCTCTCCTGCTGCTGCCCACAA
GTGTTGACTGTGGTTACTATTGGCTTTTGAATTGCCTGCTTTGTATGTTT
CCACTCCCTTCTCTATCCTTCAGCAGACGACTTTCTCCGCTCTGGTTCCG
GAAGCGAACCGGAGCGATGACTGAGATACTGGTCGCCGCGAGCCGAGGCT
AA
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