mRNA_H-paniculata_contig21156.5534.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21156.5534.1
Unique NamemRNA_H-paniculata_contig21156.5534.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21156.5534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21156contigH-paniculata_contig21156:828..2150 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size195
Cds size195
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929562.080715-CDS-H-paniculata_contig21156:827..9571622929562.080715-CDS-H-paniculata_contig21156:827..957Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21156 828..957 -
1691480914.9538293-CDS-H-paniculata_contig21156:827..9571691480914.9538293-CDS-H-paniculata_contig21156:827..957Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21156 828..957 -
1622929562.095299-CDS-H-paniculata_contig21156:2085..21501622929562.095299-CDS-H-paniculata_contig21156:2085..2150Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21156 2086..2150 -
1691480914.9653566-CDS-H-paniculata_contig21156:2085..21501691480914.9653566-CDS-H-paniculata_contig21156:2085..2150Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21156 2086..2150 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21156.5534.1prot_H-paniculata_contig21156.5534.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21156 828..2150 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21156.5534.1

>prot_H-paniculata_contig21156.5534.1 ID=prot_H-paniculata_contig21156.5534.1|Name=mRNA_H-paniculata_contig21156.5534.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
LGCAGQGGRLVMCSGADHVPLRRSAPPELGWRAAKASSRHMGAVYLPARA
RSTWKGCCGTPRLS*
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mRNA from alignment at H-paniculata_contig21156:828..2150-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21156.5534.1 ID=mRNA_H-paniculata_contig21156.5534.1|Name=mRNA_H-paniculata_contig21156.5534.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1323bp|location=Sequence derived from alignment at H-paniculata_contig21156:828..2150- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGGTTGCGCGGGGCAAGGCGGGCGCTTGGTCATGTGTTCGGGCGCGGA
TCACGTGCCGCTCAGGTAGGCTTTTCGGTTAGGGAATTTTTGGCATGATT
GAACATTGTTTCTCGTTTGTTATTAATAGCCATGGTGTTGCTTGTACTAT
GTGGTGATCATGATAAGCCCATGTTTTCGGTGTAATTGAATTCCGAAAAT
GGGCTAGATTATCAATGGACTGGTAATCGAATTCATTTCGAATGAAGTAG
ACTATTAATCGATTGGTGCGATTGATTTCCGAAAATGAAAGTCACCATCA
CTTGACTGGTGCATCGAATTAGTCGATTGATTGTGAAGCCACCGGCGACC
AGCAGTGGAGCCATCTTCCAATTTTTCCCCGAGTGTGAGTGAAGGGGGCT
GATCCGTGATGTAGCCCTTTCGAAGGCTGTATATTTCTAAGGTCAGTGCA
TCATGCCGCACGTGATAGTTTATCTTTGTACGCATAGTATATACTATCAG
CTATCTTCCGACTGTGGAAACTCGAAAATGACGTTGGAAGCTTCAAGAAA
TCTGATGCTAGCCCAAGCATTATCGGAATCGAAAAACCTCTCGGAACGAA
GAAATCATACATACAACGACTAATTAATCGTTGTTAGTCGACTGGTGCGA
CTGAATTCCAAAAATGCACTTGACTACAAGTTCATTGGTGTAAGTAATCA
GTCGACTAATAAAAAAACACATAACGCCAACGACTAGTCCAACATGTGTG
ACGAGGGATAACACCCCCCCCCCCCCTTCCCCCCACCGTGGCCGCAGCCG
CAGCCGCCCTGAATTCAGAACCCAGAAAAAATAGAAAACATCACCCAAAA
ACGTTAGGGTCAGATTGCCTATGGCTGGGCGGCGTTTAGTCATGTAGCGC
TGGAAGCGTTAGTGTTTACAACACCTGCGCAAAAGTTTCACTTCTGATGT
CTAATTAATTAGTAAAAGTCACCTAAATGACAAATTGAAAAATTTGAAAG
CTCATACTGGAAGATGACGTTGAAGTGTACAAAAACAATTTTCTATTGAT
TTCTCGACAGGTAACTGCGAATGTGGCCCATATCAAGTAGAGGGAAAGTA
TATGTTTCTTCCATCGTCCTTGCCCCCTGCCCCCGCCCCCGATATTCCCC
GACCCTCCCTCCCTCCCTCCCTCCCTGCAATACATCCACCTAGGCGGTCG
GCGCCGCCGGAATTGGGATGGCGCGCGGCAAAGGCCAGCAGCCGCCACAT
GGGGGCGGTGTACCTCCCGGCACGAGCTCGATCGACGTGGAAGGGCTGCT
GCGGCACTCCAAGGCTCTCATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig21156:828..2150-

>mRNA_H-paniculata_contig21156.5534.1 ID=mRNA_H-paniculata_contig21156.5534.1|Name=mRNA_H-paniculata_contig21156.5534.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig21156:828..2150- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGGTTGCGCGGGGCAAGGCGGGCGCTTGGTCATGTGTTCGGGCGCGGA
TCACGTGCCGCTCAGCTGGGTTGCGCGGGGCAAGGCGGGCGCTTGGTCAT
GTGTTCGGGCGCGGATCACGTGCCGCTCAGGCGGTCGGCGCCGCCGGAAT
TGGGATGGCGCGCGGCAAAGGCCAGCAGCCGCCACATGGGGGCGGTGTAC
CTCCCGGCACGAGCTCGATCGACGTGGAAGGGCTGCTGCGGCACTCCAAG
GCTCTCATGAGCGGTCGGCGCCGCCGGAATTGGGATGGCGCGCGGCAAAG
GCCAGCAGCCGCCACATGGGGGCGGTGTACCTCCCGGCACGAGCTCGATC
GACGTGGAAGGGCTGCTGCGGCACTCCAAGGCTCTCATGA
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