mRNA_H-paniculata_contig2115.5532.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2115.5532.1
Unique NamemRNA_H-paniculata_contig2115.5532.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2115.5532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2115contigH-paniculata_contig2115:19022..19599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size580
Cds size357
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929561.7225056-CDS-H-paniculata_contig2115:19021..193781622929561.7225056-CDS-H-paniculata_contig2115:19021..19378Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2115 19022..19378 +
1691480914.773667-CDS-H-paniculata_contig2115:19021..193781691480914.773667-CDS-H-paniculata_contig2115:19021..19378Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2115 19022..19378 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929561.7396083-UTR-H-paniculata_contig2115:19378..195991622929561.7396083-UTR-H-paniculata_contig2115:19378..19599Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2115 19379..19599 +
1691480914.7845614-UTR-H-paniculata_contig2115:19378..195991691480914.7845614-UTR-H-paniculata_contig2115:19378..19599Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2115 19379..19599 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2115.5532.1prot_H-paniculata_contig2115.5532.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2115 19022..19378 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2115.5532.1

>prot_H-paniculata_contig2115.5532.1 ID=prot_H-paniculata_contig2115.5532.1|Name=mRNA_H-paniculata_contig2115.5532.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp
GPRPIPNPLHHAWVEVTIQTSERNHNDDVQKTSQATSTHNRIATTTGDTI
QGRTANNTREGCGVCLSIASAFFVLRGHSGAAVLPINKFRPTGTLQQWTS
GKNILELPKKTVKSTSVL*
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mRNA from alignment at H-paniculata_contig2115:19022..19599+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2115.5532.1 ID=mRNA_H-paniculata_contig2115.5532.1|Name=mRNA_H-paniculata_contig2115.5532.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=578bp|location=Sequence derived from alignment at H-paniculata_contig2115:19022..19599+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCCCGCGCCCCATCCCTAACCCCCTACATCATGCATGGGTTGAAGTGAC
AATACAAACTAGCGAACGCAACCACAACGATGATGTTCAGAAAACATCAC
AGGCAACGTCCACACACAATCGCATTGCAACAACGACAGGGGATACAATT
CAAGGGAGGACAGCAAACAACACACGGGAGGGGTGCGGCGTCTGCCTCAG
CATCGCCTCTGCATTTTTTGTTCTTCGTGGCCACAGTGGCGCCGCTGTAC
TTCCGATCAACAAATTCCGACCTACAGGTACTTTACAGCAGTGGACGTCC
GGTAAAAACATACTAGAATTGCCAAAAAAAACAGTCAAAAGCACGAGTGT
TCTTTAATCAGTTAACCAGGTTGATTACCAAACCCTTCCACCACGTATCT
CACCTAAATATGCGCTAACCGTCGTCACCTGTTAACATCAATAGTCCGTG
ACGTTCAGAAGGTCGCTGTCACGAAGCACATGAAAACAACGTCATATCTG
TGACACAATAAAGTTCATAAACTAACGCCAAACGCTGGACCTCCCACCCC
CACCCACCCTCCTGCCCACTGATCGAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig2115:19022..19599+

>mRNA_H-paniculata_contig2115.5532.1 ID=mRNA_H-paniculata_contig2115.5532.1|Name=mRNA_H-paniculata_contig2115.5532.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at H-paniculata_contig2115:19022..19599+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCCCGCGCCCCATCCCTAACCCCCTACATCATGCATGGGTTGAAGTGAC
AATACAAACTAGCGAACGCAACCACAACGATGATGTTCAGAAAACATCAC
AGGCAACGTCCACACACAATCGCATTGCAACAACGACAGGGGATACAATT
CAAGGGAGGACAGCAAACAACACACGGGAGGGGTGCGGCGTCTGCCTCAG
CATCGCCTCTGCATTTTTTGTTCTTCGTGGCCACAGTGGCGCCGCTGTAC
TTCCGATCAACAAATTCCGACCTACAGGTACTTTACAGCAGTGGACGTCC
GGTAAAAACATACTAGAATTGCCAAAAAAAACAGTCAAAAGCACGAGTGT
TCTTTAAGGCCCGCGCCCCATCCCTAACCCCCTACATCATGCATGGGTTG
AAGTGACAATACAAACTAGCGAACGCAACCACAACGATGATGTTCAGAAA
ACATCACAGGCAACGTCCACACACAATCGCATTGCAACAACGACAGGGGA
TACAATTCAAGGGAGGACAGCAAACAACACACGGGAGGGGTGCGGCGTCT
GCCTCAGCATCGCCTCTGCATTTTTTGTTCTTCGTGGCCACAGTGGCGCC
GCTGTACTTCCGATCAACAAATTCCGACCTACAGGTACTTTACAGCAGTG
GACGTCCGGTAAAAACATACTAGAATTGCCAAAAAAAACAGTCAAAAGCA
CGAGTGTTCTTTAA
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