mRNA_H-paniculata_contig21149.5530.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21149.5530.1
Unique NamemRNA_H-paniculata_contig21149.5530.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21149.5530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21149contigH-paniculata_contig21149:893..2655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1764
Cds size1755
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929561.66335-UTR-H-paniculata_contig21149:892..9001622929561.66335-UTR-H-paniculata_contig21149:892..900Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21149 893..900 +
1691480914.7555146-UTR-H-paniculata_contig21149:892..9001691480914.7555146-UTR-H-paniculata_contig21149:892..900Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21149 893..900 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929561.678483-CDS-H-paniculata_contig21149:900..26551622929561.678483-CDS-H-paniculata_contig21149:900..2655Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21149 901..2655 +
1691480914.7644858-CDS-H-paniculata_contig21149:900..26551691480914.7644858-CDS-H-paniculata_contig21149:900..2655Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21149 901..2655 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21149.5530.1prot_H-paniculata_contig21149.5530.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21149 901..2655 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21149.5530.1

>prot_H-paniculata_contig21149.5530.1 ID=prot_H-paniculata_contig21149.5530.1|Name=mRNA_H-paniculata_contig21149.5530.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=585bp
MSFVSALRTQEATSSPSPSNDREHRNHVHGKAMSKAHTLPRDTVASMTQG
ASPVSDYRNANSYVDAVGEGPRSESEPRQTSFEVYSAQQDPPYVRDVSEG
EDIAAFALLACRNSVSRSSSGSSGEGAAEGAGGGDGGAGGGAGRVDSGSW
MNLLRSGGEPTSLSGSLFPRSSSGSSAASGTASSGAGAGGFGRGSVLSAM
DNDPGPMPEHAPFGFGSYSGTGGNHAPQRHASRSQTARRLLASSFGRSYG
SGIHDRGGSGGNGGGGGGGIGPGRVAGSSGWMPVPCMPGMAGAGSPGTGG
IDRCCQGPPHRFRQCSFDPHKPVLGLPLQSNSWDGSYHPLPAAGPSLARV
SPAMPLDNQSYFVSFGTTSFTGGTRPAAYEGVRPSRQPLAVGGRFIDEAS
CVREEGGGGGIEVMAPTTHPPHARTVAPVRTTPPVQGAEAAPRNRLFGGS
TVTRLTERNDTRNNGVEEDESSHGRKPSFDHLKSLIPGFEALTGGSGGGA
RHAGNSNCGIGGDGGNGRSSFPEGKMEPRATTPLEGRMDPPLADGGVGLL
KRPFSAIDGSACHNKKPISVSGLTLGQEHIVTPRQ
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mRNA from alignment at H-paniculata_contig21149:893..2655+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21149.5530.1 ID=mRNA_H-paniculata_contig21149.5530.1|Name=mRNA_H-paniculata_contig21149.5530.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1763bp|location=Sequence derived from alignment at H-paniculata_contig21149:893..2655+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGGCTCAATGTCATTCGTTTCAGCCCTCCGCACCCAGGAGGCAACTTCC
TCACCTTCACCTTCGAACGACCGGGAACACCGGAACCACGTGCACGGGAA
AGCAATGTCCAAGGCGCACACGCTGCCAAGAGATACGGTTGCTTCAATGA
CTCAGGGGGCGTCCCCAGTATCAGATTATAGGAATGCCAACAGTTATGTT
GATGCGGTCGGTGAAGGTCCCAGGTCAGAATCAGAGCCAAGACAGACCTC
CTTCGAAGTGTATTCAGCACAGCAGGATCCGCCCTACGTAAGAGATGTCA
GCGAAGGGGAGGACATCGCGGCATTTGCCCTTCTTGCGTGTCGAAATTCT
GTCAGCCGTTCCAGTAGCGGTAGCAGTGGAGAAGGTGCCGCTGAAGGTGC
CGGCGGCGGCGATGGCGGGGCTGGCGGCGGGGCTGGGCGAGTCGACTCAG
GAAGTTGGATGAATTTACTTCGCAGCGGGGGCGAACCTACCAGTCTGTCA
GGGAGCCTTTTCCCCAGAAGCAGCAGTGGCAGCAGCGCGGCAAGCGGCAC
CGCAAGCAGCGGCGCTGGTGCCGGAGGCTTCGGCCGAGGCTCTGTTCTTT
CGGCAATGGACAACGATCCCGGACCCATGCCCGAGCATGCCCCCTTTGGT
TTCGGGAGTTACAGTGGTACGGGCGGTAACCACGCCCCTCAGCGGCATGC
ATCACGCTCACAAACAGCCCGGAGACTCTTGGCATCATCCTTCGGACGTT
CATACGGTAGCGGCATACACGATCGCGGGGGTAGCGGTGGTAACGGGGGC
GGCGGTGGTGGCGGTATCGGGCCCGGAAGAGTCGCGGGGAGTTCTGGATG
GATGCCTGTACCATGTATGCCTGGTATGGCCGGTGCTGGTTCGCCCGGGA
CGGGTGGCATTGACCGTTGTTGTCAAGGCCCGCCGCATAGATTCAGGCAG
TGTTCTTTCGATCCGCATAAACCCGTGCTTGGGCTGCCTCTCCAGAGTAA
TTCTTGGGATGGGTCGTACCACCCTCTTCCAGCTGCGGGGCCATCACTTG
CGAGAGTATCACCCGCGATGCCTCTCGATAACCAAAGTTATTTCGTCAGT
TTCGGCACCACATCGTTCACAGGAGGAACCCGGCCTGCGGCATACGAAGG
AGTTCGTCCTAGTAGACAGCCGCTCGCCGTGGGCGGCAGGTTCATCGACG
AAGCTAGTTGCGTGCGAGAAGAGGGTGGGGGCGGCGGGATCGAAGTTATG
GCGCCGACCACCCACCCACCTCACGCACGGACCGTTGCACCGGTGCGAAC
AACTCCTCCAGTCCAGGGTGCAGAGGCGGCACCGAGAAATCGATTATTCG
GAGGCTCCACCGTTACGCGACTGACTGAGCGCAACGACACTCGTAATAAC
GGCGTCGAGGAGGACGAATCCAGCCACGGGCGCAAGCCGAGCTTTGATCA
TCTCAAGAGCTTGATTCCTGGGTTTGAGGCGCTAACGGGCGGCAGCGGCG
GTGGCGCGCGGCACGCAGGAAATAGCAATTGTGGGATAGGCGGTGACGGT
GGAAATGGGAGATCATCGTTTCCAGAGGGGAAAATGGAGCCCAGGGCGAC
GACACCCCTGGAAGGGAGAATGGACCCTCCATTGGCAGATGGCGGCGTCG
GGTTGTTGAAGCGGCCATTTTCTGCTATAGATGGCAGTGCCTGCCACAAC
AAAAAGCCGATCTCGGTTAGTGGGCTGACGCTTGGACAAGAGCATATCGT
GACACCACGACAG
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Coding sequence (CDS) from alignment at H-paniculata_contig21149:893..2655+

>mRNA_H-paniculata_contig21149.5530.1 ID=mRNA_H-paniculata_contig21149.5530.1|Name=mRNA_H-paniculata_contig21149.5530.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3510bp|location=Sequence derived from alignment at H-paniculata_contig21149:893..2655+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCATTCGTTTCAGCCCTCCGCACCCAGGAGGCAACTTCCTCACCTTC
ACCTTCGAACGACCGGGAACACCGGAACCACGTGCACGGGAAAGCAATGT
CCAAGGCGCACACGCTGCCAAGAGATACGGTTGCTTCAATGACTCAGGGG
GCGTCCCCAGTATCAGATTATAGGAATGCCAACAGTTATGTTGATGCGGT
CGGTGAAGGTCCCAGGTCAGAATCAGAGCCAAGACAGACCTCCTTCGAAG
TGTATTCAGCACAGCAGGATCCGCCCTACGTAAGAGATGTCAGCGAAGGG
GAGGACATCGCGGCATTTGCCCTTCTTGCGTGTCGAAATTCTGTCAGCCG
TTCCAGTAGCGGTAGCAGTGGAGAAGGTGCCGCTGAAGGTGCCGGCGGCG
GCGATGGCGGGGCTGGCGGCGGGGCTGGGCGAGTCGACTCAGGAAGTTGG
ATGAATTTACTTCGCAGCGGGGGCGAACCTACCAGTCTGTCAGGGAGCCT
TTTCCCCAGAAGCAGCAGTGGCAGCAGCGCGGCAAGCGGCACCGCAAGCA
GCGGCGCTGGTGCCGGAGGCTTCGGCCGAGGCTCTGTTCTTTCGGCAATG
GACAACGATCCCGGACCCATGCCCGAGCATGCCCCCTTTGGTTTCGGGAG
TTACAGTGGTACGGGCGGTAACCACGCCCCTCAGCGGCATGCATCACGCT
CACAAACAGCCCGGAGACTCTTGGCATCATCCTTCGGACGTTCATACGGT
AGCGGCATACACGATCGCGGGGGTAGCGGTGGTAACGGGGGCGGCGGTGG
TGGCGGTATCGGGCCCGGAAGAGTCGCGGGGAGTTCTGGATGGATGCCTG
TACCATGTATGCCTGGTATGGCCGGTGCTGGTTCGCCCGGGACGGGTGGC
ATTGACCGTTGTTGTCAAGGCCCGCCGCATAGATTCAGGCAGTGTTCTTT
CGATCCGCATAAACCCGTGCTTGGGCTGCCTCTCCAGAGTAATTCTTGGG
ATGGGTCGTACCACCCTCTTCCAGCTGCGGGGCCATCACTTGCGAGAGTA
TCACCCGCGATGCCTCTCGATAACCAAAGTTATTTCGTCAGTTTCGGCAC
CACATCGTTCACAGGAGGAACCCGGCCTGCGGCATACGAAGGAGTTCGTC
CTAGTAGACAGCCGCTCGCCGTGGGCGGCAGGTTCATCGACGAAGCTAGT
TGCGTGCGAGAAGAGGGTGGGGGCGGCGGGATCGAAGTTATGGCGCCGAC
CACCCACCCACCTCACGCACGGACCGTTGCACCGGTGCGAACAACTCCTC
CAGTCCAGGGTGCAGAGGCGGCACCGAGAAATCGATTATTCGGAGGCTCC
ACCGTTACGCGACTGACTGAGCGCAACGACACTCGTAATAACGGCGTCGA
GGAGGACGAATCCAGCCACGGGCGCAAGCCGAGCTTTGATCATCTCAAGA
GCTTGATTCCTGGGTTTGAGGCGCTAACGGGCGGCAGCGGCGGTGGCGCG
CGGCACGCAGGAAATAGCAATTGTGGGATAGGCGGTGACGGTGGAAATGG
GAGATCATCGTTTCCAGAGGGGAAAATGGAGCCCAGGGCGACGACACCCC
TGGAAGGGAGAATGGACCCTCCATTGGCAGATGGCGGCGTCGGGTTGTTG
AAGCGGCCATTTTCTGCTATAGATGGCAGTGCCTGCCACAACAAAAAGCC
GATCTCGGTTAGTGGGCTGACGCTTGGACAAGAGCATATCGTGACACCAC
GACAGATGTCATTCGTTTCAGCCCTCCGCACCCAGGAGGCAACTTCCTCA
CCTTCACCTTCGAACGACCGGGAACACCGGAACCACGTGCACGGGAAAGC
AATGTCCAAGGCGCACACGCTGCCAAGAGATACGGTTGCTTCAATGACTC
AGGGGGCGTCCCCAGTATCAGATTATAGGAATGCCAACAGTTATGTTGAT
GCGGTCGGTGAAGGTCCCAGGTCAGAATCAGAGCCAAGACAGACCTCCTT
CGAAGTGTATTCAGCACAGCAGGATCCGCCCTACGTAAGAGATGTCAGCG
AAGGGGAGGACATCGCGGCATTTGCCCTTCTTGCGTGTCGAAATTCTGTC
AGCCGTTCCAGTAGCGGTAGCAGTGGAGAAGGTGCCGCTGAAGGTGCCGG
CGGCGGCGATGGCGGGGCTGGCGGCGGGGCTGGGCGAGTCGACTCAGGAA
GTTGGATGAATTTACTTCGCAGCGGGGGCGAACCTACCAGTCTGTCAGGG
AGCCTTTTCCCCAGAAGCAGCAGTGGCAGCAGCGCGGCAAGCGGCACCGC
AAGCAGCGGCGCTGGTGCCGGAGGCTTCGGCCGAGGCTCTGTTCTTTCGG
CAATGGACAACGATCCCGGACCCATGCCCGAGCATGCCCCCTTTGGTTTC
GGGAGTTACAGTGGTACGGGCGGTAACCACGCCCCTCAGCGGCATGCATC
ACGCTCACAAACAGCCCGGAGACTCTTGGCATCATCCTTCGGACGTTCAT
ACGGTAGCGGCATACACGATCGCGGGGGTAGCGGTGGTAACGGGGGCGGC
GGTGGTGGCGGTATCGGGCCCGGAAGAGTCGCGGGGAGTTCTGGATGGAT
GCCTGTACCATGTATGCCTGGTATGGCCGGTGCTGGTTCGCCCGGGACGG
GTGGCATTGACCGTTGTTGTCAAGGCCCGCCGCATAGATTCAGGCAGTGT
TCTTTCGATCCGCATAAACCCGTGCTTGGGCTGCCTCTCCAGAGTAATTC
TTGGGATGGGTCGTACCACCCTCTTCCAGCTGCGGGGCCATCACTTGCGA
GAGTATCACCCGCGATGCCTCTCGATAACCAAAGTTATTTCGTCAGTTTC
GGCACCACATCGTTCACAGGAGGAACCCGGCCTGCGGCATACGAAGGAGT
TCGTCCTAGTAGACAGCCGCTCGCCGTGGGCGGCAGGTTCATCGACGAAG
CTAGTTGCGTGCGAGAAGAGGGTGGGGGCGGCGGGATCGAAGTTATGGCG
CCGACCACCCACCCACCTCACGCACGGACCGTTGCACCGGTGCGAACAAC
TCCTCCAGTCCAGGGTGCAGAGGCGGCACCGAGAAATCGATTATTCGGAG
GCTCCACCGTTACGCGACTGACTGAGCGCAACGACACTCGTAATAACGGC
GTCGAGGAGGACGAATCCAGCCACGGGCGCAAGCCGAGCTTTGATCATCT
CAAGAGCTTGATTCCTGGGTTTGAGGCGCTAACGGGCGGCAGCGGCGGTG
GCGCGCGGCACGCAGGAAATAGCAATTGTGGGATAGGCGGTGACGGTGGA
AATGGGAGATCATCGTTTCCAGAGGGGAAAATGGAGCCCAGGGCGACGAC
ACCCCTGGAAGGGAGAATGGACCCTCCATTGGCAGATGGCGGCGTCGGGT
TGTTGAAGCGGCCATTTTCTGCTATAGATGGCAGTGCCTGCCACAACAAA
AAGCCGATCTCGGTTAGTGGGCTGACGCTTGGACAAGAGCATATCGTGAC
ACCACGACAG
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