mRNA_H-paniculata_contig21138.5525.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21138.5525.1
Unique NamemRNA_H-paniculata_contig21138.5525.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig21138.5525.1 vs. uniprot
Match: D8LTF0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTF0_ECTSI)

HSP 1 Score: 348 bits (893), Expect = 3.090e-108
Identity = 217/424 (51.18%), Postives = 254/424 (59.91%), Query Frame = 1
Query:    1 REERLGTFTHPNFVTTVRFHPWNDHVFLTGCFDKRLRLWTVPDGRVANWVQCQDMITAANFSPDGQLTAAGLNDGRVMFYHTTDLRYYTQQIHCRNRRGGNRHGKKVTGLAFVETAQLRHRRQPPGDPSLVPALSAAQGGARGAEDGMMAG--------------GVDVSSVSDGQRRGGKADSMSAQYSLLSTTNDSRLRVYDLDNFAMTSKFKGLLNDGMQIKGSISEDGKFVISGSEDGQVYIWNSKQGPSRRPSGHSVSGVG--------------------PPIGVGGDAAAAAPATARVKSRTSLSFSVQCSARPRIATVAAFVPAAALQSVLKSWDFCDIEMSRRGRGEDEGIIKGNRGWRGSRLRRCSAPVAAESFGEAAGTAVGDGGVGLIHLRRRRWSFAGPGRLGSGGAGGGS 1170
            REERLGTFTHP+FVT+V FHP +DH+FLTGCFDKRLRLW +PDGRV +WVQCQDM++AA+FSPDG+L AAGL +GRVMFYHTTDLRYYTQ IHCRNR G  R GKKVTGL F+ET++L     P GD        AA G          AG                          RGGKADSMS+QYSLL+TTNDSRLRVYDLDNFAMTSKFKGL+NDG+QIK S S DG FV+SGSEDGQVY+WNSKQ   R+ +  SV                                  A  PAT  VKSRTS SF VQC+  P++AT AAF+P AAL++   +       + R     D  + +G +GWRG        P AA + G+A     G          RRRWSF G  R  + GAG G+
Sbjct:  437 REERLGTFTHPDFVTSVHFHPLDDHIFLTGCFDKRLRLWKIPDGRVVDWVQCQDMVSAASFSPDGKLAAAGLFNGRVMFYHTTDLRYYTQ-IHCRNRHGSKRRGKKVTGLDFIETSRLH----PCGD--------AAAGXXXXXXXXXXAGCPVAXXXXXXXXXXXXXXXXXXXXHLRGGKADSMSSQYSLLTTTNDSRLRVYDLDNFAMTSKFKGLVNDGIQIKASFSTDGMFVVSGSEDGQVYLWNSKQ--RRQRTARSVPSCNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTPATL-VKSRTSSSFDVQCATLPQVATAAAFLPTAALEAARLA---AAGGVERDDSAAD--VKRGTKGWRGGVHHSPPMPAAAHATGDAQ---EGXXXXXXXXXXRRRWSFTGHARSVAAGAGAGA 836          
BLAST of mRNA_H-paniculata_contig21138.5525.1 vs. uniprot
Match: A0A7S1ZRZ4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZRZ4_TRICV)

HSP 1 Score: 181 bits (458), Expect = 1.970e-49
Identity = 105/248 (42.34%), Postives = 143/248 (57.66%), Query Frame = 1
Query:    1 REERLGTFTHPNFVTTVRFHPWNDHVFLTGCFDKRLRLWTVPDGRVANWVQCQDMITAANFSPDGQLTAAGLNDGRVMFYHTTDLRYYTQQIHCRNRRGGNRHGKKVTGLAFVETAQ---------LRHRRQPPGDPSLVPALSAAQGGARGAEDGMMAGGVDVSSVSDGQRRGGKADSMS----AQYSLLSTTNDSRLRVYDLDNFAMTSKFKGLLNDGMQIKGSISEDGKFVISGSEDGQVYIWNS 705
            R   L  F H +FVT V FHP +D +FL+G FD++LR+W++P+GRV +W Q  DMITAA F+PDG +  AGL  G+V FY    LRYYTQ I  RNR+G  + GKKVTGL+F+   +                P  P+       A+GG RG            ++V       GKA S S    A+  +L TTNDSRLR+Y ++++ +  KFKGL+N  +QI+   SE G ++I GSE G V +WN+
Sbjct:    9 RPSCLHVFRHADFVTAVDFHPCDDGLFLSGGFDRKLRVWSIPEGRVRDWAQAPDMITAARFAPDGNMAVAGLFKGQVYFYLAEGLRYYTQ-ISARNRKGKEKMGKKVTGLSFLTGTKEEGXXXXXXXXXXXXXPSSPTRSND-DGAKGGGRGRRTIKSLSPKKGTAVHRAWSGKGKAMSRSPKRRAKDMMLVTTNDSRLRLYGMNDYCIVRKFKGLVNSSLQIRARFSESGNYIICGSETGSVLVWNT 254          
BLAST of mRNA_H-paniculata_contig21138.5525.1 vs. uniprot
Match: A0A7S3XNZ4_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNZ4_HETAK)

HSP 1 Score: 183 bits (465), Expect = 2.150e-49
Identity = 123/319 (38.56%), Postives = 164/319 (51.41%), Query Frame = 1
Query:    1 REERLGTFTHPNFVTTVRFHPWNDHVFLTGCFDKRLRLWTVPDGRVANWVQCQDMITAANFSPDGQLTAAGLNDGRVMFYHTTDLRYYTQQIHCRNRRGGNRHGKKVTGLAFVETAQLRHRRQPPGDPSLVPALSAAQGGARGAEDGMMAGG----------VDVSSVSDGQRRGGKADSMSAQYSLLSTTNDSRLRVYDLDNFAMTSKFKGLLNDGMQIKGSISEDGKFVISGSEDGQVYIWNSKQGPSRRPSGHSVSGVGPPIGVGGDAAAAAPATARVKSRTSLSFSVQCSARPRIATVAAFVPAAALQSVLKSWD 927
            RE+ L  F H +FVT V FHP  + +F++GC          PDGRV  W+Q  +++TAA F PDG    AGL  G+++FY T  +RYYTQ + CRNR+G  R+G+KVTGLAF           PPG        +AA GG         AGG          V           GG        + LL TTNDSRLR+Y +D++ M  K+KGL ND MQIK S SED +++I GSE+G+VYIW +++   +                 G +  A P   R ++    SF +     P IATVA FVPA A++  L+  D
Sbjct:  198 REDCLHHFQHSDFVTGVDFHPTQEKLFVSGCXXXXXXXXXXPDGRVKEWIQAPEIVTAAKFGPDGATVVAGLYHGQIIFYQTDGMRYYTQ-VECRNRKGPLRNGRKVTGLAFAHL--------PPGG------SNAAGGGGASPRGPTAAGGXXXXXXXXXSVGXXXXXXXXXTGGGG------HQLLVTTNDSRLRLYRVDDYLMACKYKGLANDSMQIKASFSEDNRYIICGSENGRVYIWATQRKGDKD----------------GGSTGANPGR-RDRNNAHESF-MAAGGDPAIATVAQFVPARAVRHALRPAD 477          
BLAST of mRNA_H-paniculata_contig21138.5525.1 vs. uniprot
Match: A0A7S2ERU9_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ERU9_9STRA)

HSP 1 Score: 179 bits (455), Expect = 2.190e-46
Identity = 112/289 (38.75%), Postives = 151/289 (52.25%), Query Frame = 1
Query:   13 LGTFTHPNFVTTVRFHPWNDHVFLTGCFDKRLRLWTVPDGRVANWVQCQDMITAANFSPDGQLTAAGLNDGRVMFYHTTDLRYYTQQIHCRNRRGGNRHGKKVTGLAFVETAQ---LRHRRQPPGDPSLVPALSAAQGGARGAEDGMMAGGVDVSSVSDGQRRGGKADSM-----------------SAQYS----------------------LLSTTNDSRLRVYDLDNFAMTSKFKGLLNDGMQIKGSISEDGKFVISGSEDGQVYIWNSKQGPSRRPSGHSVSGV 753
            L  F H + VT+V FHP +D  FL+G  DK+LR+W++ DGRV +W Q  +MITAA ++PD +   AGL  G+V FY    L+YYTQ I C+NR G  + GKKVTGL F+  A+   +  + QPPG             G R + + MMAG + +S+ S     G  A SM                 +  Y                       +L TTNDSRLR++ LD+F M  K+KGL+N  MQI+   +E G F++SGSE G VYIWN+       P    VSG+
Sbjct:  455 LQIFQHADLVTSVAFHPRDDGYFLSGGSDKKLRVWSILDGRVRDWAQAPEMITAARYTPDARFVVAGLLHGQVYFYDVDGLKYYTQ-ISCKNRSGSQKEGKKVTGLTFMRGAEYDGISSKSQPPG-------------GERASRESMMAGSISISTNS---LVGTHATSMIKGPDNSTALTPRSSIRATSYENSPPVSKLKYRSRQSKIIYRDKMLVTTNDSRLRLFGLDDFCMIRKYKGLVNMQMQIRARFNETGNFIVSGSESGNVYIWNTSS--KNEPLNLKVSGL 724          
BLAST of mRNA_H-paniculata_contig21138.5525.1 vs. uniprot
Match: A0A7S2KRK6_9STRA (Hypothetical protein n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KRK6_9STRA)

HSP 1 Score: 170 bits (431), Expect = 2.320e-45
Identity = 93/232 (40.09%), Postives = 131/232 (56.47%), Query Frame = 1
Query:   13 LGTFTHPNFVTTVRFHPWNDHVFLTGCFDKRLRLWTVPDGRVANWVQCQDMITAANFSPDGQLTAAGLNDGRVMFYHTTDLRYYTQQIHCRNRRGGNRHGKKVTGLAFVETAQLRHRRQPPGDPSLVPALSAAQGGARGAEDGMMAGGVDVSSVSDGQRRGGKADSMSAQYS--LLSTTNDSRLRVYDLDNFAMTSKFKGLLNDGMQIKGSISEDGKFVISGSEDGQVYIWN 702
            L  F H N V +V FHP +D  F++G  DK+LRLW + DGRV +W Q  ++IT+  F+PDG+   AGL  G+V  Y    L+YYTQ I CRNR G NR GKKVTG++F+     +        PSL   LS         E G     +  + V       G  +++S + +  +L +TNDSR+R+Y L++F M  K+KG  N+ MQI+  +SE G  +  GSE G  +IW+
Sbjct:   82 LHLFKHANLVASVDFHPLDDRYFISGGLDKKLRLWNITDGRVKDWAQAPEVITSTRFTPDGKYAVAGLLRGQVYLYEADGLKYYTQ-IACRNRSGKNRKGKKVTGISFLREVDDKSEHSEEHHPSLTERLS---------ETGRSVANLVATKVL------GNPEALSTRRTDRMLVSTNDSRVRLYGLNDFCMIRKYKGHTNNSMQIRARVSESGSHIACGSESGHCFIWD 297          
BLAST of mRNA_H-paniculata_contig21138.5525.1 vs. uniprot
Match: W7U9T0_9STRA (Wd repeat protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U9T0_9STRA)

HSP 1 Score: 172 bits (437), Expect = 7.480e-45
Identity = 122/319 (38.24%), Postives = 160/319 (50.16%), Query Frame = 1
Query:    1 REERLGTFTHPNFVTTVRFHPWNDHVFLTGCFDKRLRLWTVPDGRVANWVQCQDMITAANFSPDGQLTAAGLNDGRVMFYHTTDLRYYTQQIHCRNRRGGNRHGKKVTGLAFVETAQLRHRRQPP----GDPSLVPALSAAQG--GARGAEDGMMAGGVDVSSVSDGQRRGGKADSMSAQYSLLSTTNDSRLRVYDLDNFAMTSKFKGLLNDGMQIKGSISEDGKFVISGSEDGQVYIWNSKQGPSRRPSGHSVSGVGPPIGVGGDAAAAAPATARVKSRTSLSF--SVQCSA-RPRIATVAAFVPAAALQSVLKSWDF 930
            R E L  + H + VT V FHP  DH+F               DGRV  W    DMITAA FSP+G +  AGL  G+V FY T  ++YYTQ + CRNR G  + GKKVTGL +  ++       PP    G  +  P L  A    G   +   + +G V     +     G   +       LL TTNDSRLR+Y  ++++M  K+KGL ND MQIK S SEDGK+VISGSE+GQ+YIW      +    GH+          GG A  +AP T +    T+  F  S +     P I +VA FVPA A+   +K   +
Sbjct:  239 RSECLHVYPHVDCVTAVDFHPKIDHLFXXXXXXXXXXXXXXTDGRVKEWANTPDMITAACFSPEGSMAVAGLYRGQVFFYQTEGMKYYTQ-VECRNRHGALKGGKKVTGLCYDTSSHTVAAAFPPSSSGGATTPGPRLQGAPSTSGGHSSSFPVSSGPVSAPGPTPHSVTGAGCEQ------LLITTNDSRLRLYQTEDYSMLCKYKGLTNDHMQIKASFSEDGKYVISGSENGQIYIWKG----TTPQHGHA----------GGLAGLSAPLTFKKDRNTAYEFFPSTEIGGINPPIVSVALFVPANAVWHAMKGTSY 536          
BLAST of mRNA_H-paniculata_contig21138.5525.1 vs. uniprot
Match: K0T8Q7_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T8Q7_THAOC)

HSP 1 Score: 172 bits (436), Expect = 6.220e-44
Identity = 116/311 (37.30%), Postives = 158/311 (50.80%), Query Frame = 1
Query:    1 REERLGTFTHPNFVTTVRFHPWNDHVFLTGCFDKRLRLWTVPDGRVANWVQCQDMITAANFSPDGQLTAAGLNDGRVMFYHTTD-LRYYTQQIHCRNRRGGNRHGKKVTGLAFVETAQLRHRRQPPGDPSLVPALSAAQGGARGAEDGMMAGGVDVSSVSDGQRRGGKA-DSMSAQYSLLSTTNDSRLRVYDLDNFAMTSKFKGLLNDGMQIKGSISEDGKFVISGSEDGQVYIWNSKQGPSRRPSGHSVSGVGPPIGVGGDAAAAAPATARVKSRTSLSFSVQCSARPRIATVAAFVPAAALQSVLKSWD 927
            + E L  F H N V +V FHP +D  F++G  DK+LRLW V  GRV  W Q   +IT   FSPDG+   AGL  G+V +Y   D L+YYTQ I CRNR G +R GKKVTG++FV   +          P   P    ++ G   A+    +G    + +S  +  G KA D++     +L +TNDSRLR+Y+L++F +  K+KG  N  MQI+  +SE G  +  GSE GQV+IW +     RR   H +                    AR K+ +  SF    S  P I T   F P  +L+  L S D
Sbjct:  421 KSECLHLFKHANLVASVDFHPSDDRYFISGGVDKKLRLWDVTSGRVKEWAQSPSVITTVRFSPDGKYACAGLFRGQVYWYSVDDGLKYYTQ-IACRNRSGKHRQGKKVTGISFVRAERDDWLSTSANPPMTTPDCEDSEIGHSIAKKLSHSGREVAARLSTLRGNGAKAPDALRYTERMLVSTNDSRLRLYNLNDFCLIRKYKGNSNLSMQIRARVSESGSHIACGSETGQVFIWETSDKSRRRVGNHMMD------------------KAREKAMSHASFEASKSDLP-IVTDTVFFPGKSLREALASSD 711          
BLAST of mRNA_H-paniculata_contig21138.5525.1 vs. uniprot
Match: B8BQJ4_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQJ4_THAPS)

HSP 1 Score: 172 bits (435), Expect = 2.050e-43
Identity = 100/248 (40.32%), Postives = 151/248 (60.89%), Query Frame = 1
Query:    1 REERLGTFTHPNFVTTVRFHPWNDHVFLTGCFDKRLRLWTVPDGRVANWVQCQDMITAANFSPDGQLTAAGLNDGRVMFYHTTDLRYYTQQIHCRNRRGGNRHGKKVTGLAFVETAQ---LRHRRQPP---GDPSLVPALSAAQGGARGAEDGMMAGGVDVSSVSDGQR-----RGGKADSMSAQYS--LLSTTNDSRLRVYDLDNFAMTSKFKGLLNDGMQIKGSISEDGKFVISGSEDGQVYIWNS 705
            + + L  F H N V +V F+P +D  F++G  DK+LRLW++ DGRV +W Q  D+ITAA F+ DG+   AGL  G+V FY    L+YYTQ I CRNR G +R GKKVTG++FV   +   L+ ++  P   G+ +L    S ++          ++G V+ +     +R     RGG++ + + +Y+  +L +TNDSR+R+Y L++F +  K+KG  N  MQI+  +SE G F+ SGSE G V+IWN+
Sbjct:  780 KSQCLHLFKHANLVASVAFNPNDDRYFISGGIDKKLRLWSITDGRVRDWAQAPDVITAARFTSDGKYAVAGLFRGQVYFYDADGLKYYTQ-IACRNRSGKHRMGKKVTGISFVRGERDDWLKAKQNAPSEGGEATLDNQSSLSK----------LSGVVNEAGNRVARRVSLTFRGGESRAEALRYTERMLVSTNDSRVRLYGLNDFCLIRKYKGHTNYSMQIRARVSESGNFIASGSESGHVFIWNT 1016          
BLAST of mRNA_H-paniculata_contig21138.5525.1 vs. uniprot
Match: A0A196S6S1_BLAHN (Uncharacterized protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196S6S1_BLAHN)

HSP 1 Score: 160 bits (405), Expect = 2.040e-41
Identity = 84/231 (36.36%), Postives = 127/231 (54.98%), Query Frame = 1
Query:   13 LGTFTHPNFVTTVRFHPWNDHVFLTGCFDKRLRLWTVPDGRVANWVQCQDMITAANFSPDGQLTAAGLNDGRVMFYHTTDLRYYTQQIHCRNRRGGNRHGKKVTGLAFVETAQLRHRRQPPGDPSLVPALSAAQGGARGAEDGMMAGGVDVSSVSDGQRRGGKADSMSAQYSLLSTTNDSRLRVYDLDNFAMTSKFKGLLNDGMQIKGSISEDGKFVISGSEDGQVYIWNS 705
            L  F H + VT+V F+P  +  F++GC D++LR+W++P G V  W Q   +IT   F P G+L AAGL+DG+V+FY++  LRY+TQ + CRNR G ++ G+KVTG++F+    ++ +RQ                                                     +L TTNDSRLRV  LD F++T+KFKG +N   Q+K S+S D K++  GS++G+VY+W +
Sbjct:  159 LCIFKHKDMVTSVDFYPEEEAYFISGCMDRKLRVWSIPQGCVLKWTQAPSVITTVTFCPGGRLCAAGLSDGQVIFYYSDGLRYFTQ-MECRNRHGKDKAGRKVTGISFL----VKEKRQ----------------------------------------------------YMLVTTNDSRLRVMSLDTFSITTKFKGHVNRSRQLKASLSSDRKYIACGSDNGRVYLWRT 332          
BLAST of mRNA_H-paniculata_contig21138.5525.1 vs. uniprot
Match: K3WSW5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSW5_GLOUD)

HSP 1 Score: 160 bits (404), Expect = 3.380e-41
Identity = 95/260 (36.54%), Postives = 129/260 (49.62%), Query Frame = 1
Query:    1 REERLGTFTHPNFVTTVRFHPWNDHVFLTGCFDKRLRLWTVPDGRVANWVQCQDMITAANFSPDGQLTAAGLNDGRVMFYHTTD---LRYYTQQIHCRNRRGGNRHGKKVTGLAFVETAQLRHRRQPPGDPSLVPALSAAQGGARGAEDGMMAGGVDVSSVSDGQRRGGKADSMSAQYSLLSTTNDSRLRVYDLDNFAMTSKFKGLLNDGMQIKGSISEDGKFVISGSEDGQVYIWNSKQGPSRRPSGHSVSGVGPPIGV 771
            RE+ L  F HP+ V  V FHP  D  FL+GCFD + R+W +PDG V ++VQ   MITAA+F+P G     GL +G+ +FY       + YYTQ I CRN RG  + G+KVTG+ F              DP                                             +Y ++ST NDSR+R++ +DN++   K+KGL+ND +QIKG  S+DG +VI GSE+G VY+WN      R  S        PP G+
Sbjct:  187 REDCLHVFQHPDSVPAVDFHPKEDRYFLSGCFDNKARVWDIPDGCVVSYVQTPVMITAASFNPSGTRAIVGLLNGQCIFYQVNSHQQMNYYTQ-IECRNSRGPMKKGRKVTGIEF--------------DPE-------------------------------------------GKYFMVST-NDSRMRLFSVDNYSRICKYKGLVNDHLQIKGRFSQDGDYVICGSENGSVYVWNKACKHDRNASYEYFCAAEPPNGI 387          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21138.5525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTF0_ECTSI3.090e-10851.18Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1ZRZ4_TRICV1.970e-4942.34Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S3XNZ4_HETAK2.150e-4938.56Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]
A0A7S2ERU9_9STRA2.190e-4638.75Hypothetical protein n=4 Tax=Ditylum brightwellii ... [more]
A0A7S2KRK6_9STRA2.320e-4540.09Hypothetical protein n=2 Tax=Skeletonema marinoi T... [more]
W7U9T0_9STRA7.480e-4538.24Wd repeat protein n=2 Tax=Monodopsidaceae TaxID=42... [more]
K0T8Q7_THAOC6.220e-4437.30Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
B8BQJ4_THAPS2.050e-4340.32Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A196S6S1_BLAHN2.040e-4136.36Uncharacterized protein n=1 Tax=Blastocystis sp. s... [more]
K3WSW5_GLOUD3.380e-4136.54Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21138contigH-paniculata_contig21138:127..4287 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score354.8
Seed ortholog evalue5.3e-95
Seed eggNOG ortholog2880.D8LTF0
Preferred nameWDR44
KEGG koko:K20241,ko:K20310
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005829,GO:0005856,GO:0005874,GO:0008150,GO:0010008,GO:0012505,GO:0015630,GO:0016020,GO:0017016,GO:0017137,GO:0019899,GO:0030334,GO:0031090,GO:0031267,GO:0031410,GO:0031982,GO:0031984,GO:0032879,GO:0040012,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0048471,GO:0050789,GO:0050794,GO:0051020,GO:0051270,GO:0065007,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:2000145
EggNOG free text desc.Rab GTPase binding
EggNOG OGsKOG0283@1,KOG0283@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons5
Model size1170
Cds size1170
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21138.5525.1prot_H-paniculata_contig21138.5525.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21138 127..4287 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929561.1020386-CDS-H-paniculata_contig21138:126..3961622929561.1020386-CDS-H-paniculata_contig21138:126..396Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21138 127..396 +
1691480914.442864-CDS-H-paniculata_contig21138:126..3961691480914.442864-CDS-H-paniculata_contig21138:126..396Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21138 127..396 +
1622929561.1197186-CDS-H-paniculata_contig21138:1938..22561622929561.1197186-CDS-H-paniculata_contig21138:1938..2256Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21138 1939..2256 +
1691480914.459636-CDS-H-paniculata_contig21138:1938..22561691480914.459636-CDS-H-paniculata_contig21138:1938..2256Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21138 1939..2256 +
1622929561.164022-CDS-H-paniculata_contig21138:3066..31651622929561.164022-CDS-H-paniculata_contig21138:3066..3165Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21138 3067..3165 +
1691480914.4697273-CDS-H-paniculata_contig21138:3066..31651691480914.4697273-CDS-H-paniculata_contig21138:3066..3165Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21138 3067..3165 +
1622929561.1823194-CDS-H-paniculata_contig21138:3756..40381622929561.1823194-CDS-H-paniculata_contig21138:3756..4038Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21138 3757..4038 +
1691480914.479046-CDS-H-paniculata_contig21138:3756..40381691480914.479046-CDS-H-paniculata_contig21138:3756..4038Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21138 3757..4038 +
1622929561.195889-CDS-H-paniculata_contig21138:4086..42871622929561.195889-CDS-H-paniculata_contig21138:4086..4287Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21138 4087..4287 +
1691480914.4957836-CDS-H-paniculata_contig21138:4086..42871691480914.4957836-CDS-H-paniculata_contig21138:4086..4287Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21138 4087..4287 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21138.5525.1

>prot_H-paniculata_contig21138.5525.1 ID=prot_H-paniculata_contig21138.5525.1|Name=mRNA_H-paniculata_contig21138.5525.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=390bp
REERLGTFTHPNFVTTVRFHPWNDHVFLTGCFDKRLRLWTVPDGRVANWV
QCQDMITAANFSPDGQLTAAGLNDGRVMFYHTTDLRYYTQQIHCRNRRGG
NRHGKKVTGLAFVETAQLRHRRQPPGDPSLVPALSAAQGGARGAEDGMMA
GGVDVSSVSDGQRRGGKADSMSAQYSLLSTTNDSRLRVYDLDNFAMTSKF
KGLLNDGMQIKGSISEDGKFVISGSEDGQVYIWNSKQGPSRRPSGHSVSG
VGPPIGVGGDAAAAAPATARVKSRTSLSFSVQCSARPRIATVAAFVPAAA
LQSVLKSWDFCDIEMSRRGRGEDEGIIKGNRGWRGSRLRRCSAPVAAESF
GEAAGTAVGDGGVGLIHLRRRRWSFAGPGRLGSGGAGGGS
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mRNA from alignment at H-paniculata_contig21138:127..4287+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21138.5525.1 ID=mRNA_H-paniculata_contig21138.5525.1|Name=mRNA_H-paniculata_contig21138.5525.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4161bp|location=Sequence derived from alignment at H-paniculata_contig21138:127..4287+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGAGGAACGGCTCGGCACGTTTACCCACCCGAATTTCGTGACGACCGT GCGCTTCCATCCATGGAACGACCACGTGTTTCTCACGGGCTGCTTCGATA AACGCCTGCGGCTTTGGACTGTCCCCGACGGTAGGGTGGCGAATTGGGTC CAGTGTCAGGACATGATCACGGCGGCAAATTTTTCGCCGGACGGACAGCT CACGGCTGCTGGACTCAATGATGGCCGCGTGATGTTTTACCATACTACAG ATCTTCGGTACTACACGCAGGTACATCGGGGGGGGGAGGGCATGGTAGCG CGGTGATTTAGTTACGCCCTGGGAATATCAACGGGGTGTCGAGGGTTGGA ATTTTCGTGTTGGAGCAGTTCAGGGACGTTTTGTGATAACCTCCATTTTT TTAATCCTTGGGGGTGAAGGCTGACACCTCGATAATCTGTTTTCTGGGGG TCTAATTTTCCTCTCTTTTTTTTCTTTATATTGTGCAAAAGGCGTCATAT TCTGGAAAATAGCAATAGAGGCGATTGTACAGGCGAGGGAGGAAGATCTC TCGTCCTGTTTGAGAAGCGCATTGGGTTGATCGCTCAGCACCCTCTCCCC CCAAAATGAGCTAAGGGTTGTTTGTAAGACGGGATTTTAAAAAAGAGGAT TTTTAGAGCCTGCTCTGAACCAAGTTTTGACTTTTGACTTATGATCATTT TAACGAATATGGTGCTAGACGTGGTGAAAGAGGAGACTGTGACTGACTTT CATCTATTTAGTCTCTACCTGCGGAAATTTCTTCTCTCCGACTCCGGATG TGGGCGATTGGACTGAAGTGTTGAACAAGTAAATGGTCTCCTGTGGATTG GCGTGGCACGCGGCGTGCAGTCCTGAAGCTGGAAGACAAATCGTGGATTT AGTGCTGTCCCCATATTTCAAACGATTTTCACACGGCTCTGCAGTGTGCA AGGCCCATCGCCCCCCGGCCCTAATATTTTTCAAGGCTGACTTGCGTAGA AAACTGCAGTTGCCCGTGACACCGACAGATGTCGTGAGATGGAAGTATGT CGTCGAAATCTGTCCATGGCCGTGCTATTTCGACAGCGCACAGGGTCTTG CTCCTGAAGAACATCGCGTTTGAAGCAAATCATTATTCTCCGGGGCGATA CATACACATCCTGTAAACTACGGTATTATAACCTTTCGTTTTGTGACCCG AGTCTGAGAAGTCAGGGTAATGGGCGAGATATTTCAGACAACTATCTTTT TTTCAGGGCTCTTTACGTCACACTAACGTCACACATTTTATCTTAGTTTT TATGTAGTGTAACGTTAACGTATGTTACACTACATAAAAACTAAGATAAA ATGTGTGACGTAGTGTGACGTAAAGAGCCCTGCTTTTTTTTCTCTTCATC ACCACATTAGATTATCGCTCAATCAAATCCGGTTGATCGTAAGAGTTGAC CACAGTGTCATAAGCGTGTCGATGCTTTAACCCGTTGACCACGAAAGGGA GTAATAATTCCAGTTGCGTCGACATCAACCATGGGGCGCTCTGTTGGTTT GGCTTAACAAATGTGTGTATTTTTTTCCCTCATGTTGTTAAAATGTCAGA TGTGTCACGCCTCGGTGAAAAGGTGAGTAACCCGTTGACCCCCGAAACGG GAGCAAAATCATGTTCAGAAGCTTGTCGTTGGCAAATTAATGGAAATGGA CACGGATGGGCACACACCCCATTTACGGGGGAAAATTGTTATGAAGGCAC ACTCGGTTTACTCTCCTCCTATCTCCTTTCCTCCGCAATTGTTCCGCCTA CGAATGGCTAAGCAGATCCACTGCAGGAATCGACGCGGCGGTAATCGACA CGGAAAAAAAGTAACGGGCTTGGCCTTCGTCGAAACGGCCCAGTTGCGAC ATCGTCGGCAACCTCCCGGCGACCCCTCTCTTGTGCCCGCGCTATCGGCC GCTCAGGGAGGGGCGCGGGGCGCGGAGGATGGCATGATGGCGGGCGGTGT CGATGTGTCGAGCGTGAGCGATGGGCAGCGAAGGGGGGGTAAGGCAGACA GCATGTCGGCGCAGTACAGTCTGCTGTCTACGACTAATGACTCAAGATTA AGGGTCTACGACCTCGACAACTTTGCCATGGTATGTGCCGCATGCAATTC GGTTTGACTGTGTCTGAACTTTTTTTCATGCCTCTCAATGTATTTGGTCG TATCGTGTGGTTGGTGTCTCCATCCATCATCGAAAGACACTGAAGTACCT GGCAAAAACTAGATTGCTTTGCTCGTAGTTTTGTTCACCTTGTAGATAAT AACCAAGTAATCTAGCAGCTTGAAGATGCTGAGCATACCTCCTTCTTGTT TCATGGTTATTGTCATGTATTTTGCAGTAAGTTACCCGCTTTTTTCTTGG GACTCACCCTGCCCCCGCGCTCCCTCTCTATCGGGGTTGTCGCGACGCTG TGACTGCTATCACATGGTTTGCGGTGCGGTCAAGCGTAGTCATGGGTTGC CTACAAGCAGAGTTGGATTTCGACCCTTACGCGTTGTGTAGGTTGATAGT GAGGATGTTTTGGGGTGTTTGGTGCTGAAGTCGCGGATGAGGTGGACTTC GAATCGCGGAATGAAGTGTCAAGGGTTGAGAGGGCCCATGCTTGACATAT TTACTGTGATTTGAGGAGATGTGCCCGTCTGCTGCTTTCCTTTTTCTCCC TCGTGCTGGTAATTCTCTCGATTTTTGAACGGTTTGATCGCGCAATATAT TACGTTCGGGATCCGGTCAGCCGTGGGCTGTGATCTTCAATCGCCCCTGG TCTCCGACAAAAACGAGAAAGCGGGCGCCGCTTGAGTTGTTAACATTGGA GTACATATCCGAATCTGGCTTCGTAACACACACTAATGGTGGTTCGACTC GTTCGTGTGACTGACCTTCGTATCTTTGTGTTCCCTGCAGACCAGCAAAT TCAAGGGTCTGCTGAACGACGGCATGCAGATAAAGGGCAGCATCAGCGAG GATGGCAAGTTTGTCATTTCGGGCTCGGAAGATGGACAGGTGACATCGCT GGGGTTAACGGTGTGACTCCCCATCGGATTTGGCGTTGTTAGTGTTTTCA CTTTTGGTATGCTTTATCCTGGTGAGCAGTCAGTCTACTTGGCATGGTGA GGTTGGCTGGCGGTGCCCCCCGGCTGCTCGGAAGGTGTTCAATCTACGTA CCCGGGTGCTGGAGTGCGACGTTGTGTTGATGACTCGAAAATGCAGGCAT TATCGAATGTATTTCAGCGTGTCTGTTGGCATTACACTTTCTATTGTCCC ACCGCTCGAAGCACACTCCTTGTAGCTGCGTTCAGGAGACCTGGTCTAAT TGCTCATACCGTATTTCTAGTGTTCCGTTGGTCGCGATAAGAATTGGGTT ATAGTAAGTCTCAAACTTTTCTTGTTCCATACTTCAAAAAATGACGTCAG TCATGGTAACATCAATAATTACCCCGATCTAAAAGTGACGAGCCTAGTAC AGTACAGTACAGTGTGAAGTCGACGCTCCCGCGCCTTCACCATCACTGGG TGTCTTCTTTTAGTACTTGATTGTATAGCCGTCCCGGGCTGTGCCGCCCC TGTTTCTTCGCCCCCTCTCCCTAATCCCAGGTGTACATATGGAATTCAAA GCAAGGACCAAGCCGCCGCCCGAGTGGTCACTCGGTGTCTGGCGTCGGAC CACCCATAGGGGTGGGAGGCGACGCAGCCGCCGCAGCACCGGCAACCGCT CGCGTGAAATCACGAACGTCTTTGTCGTTCAGCGTGCAGTGCTCTGCACG ACCGAGGATAGCGACGGTTGCAGCGTTTGTCCCCGCTGCCGCGCTGCAAT CGGTACTGAAAAGCTGGGATTTTTGCGACATTGAAATGTCGCGAAGAGGC AGAGGCGAAGACGTGTCTTCGTGGACGGGTGTTGTAGCTGGCGCGGGATC CATGCCAAAGGAGGGGATCATTAAGGGGAATCGAGGGTGGAGGGGTAGCC GTTTGCGAAGGTGTTCGGCGCCCGTGGCGGCGGAATCTTTTGGAGAAGCT GCGGGGACGGCAGTCGGGGATGGGGGCGTTGGCTTGATTCATCTCCGGAG AAGGAGATGGTCGTTCGCGGGGCCAGGGCGGCTCGGCTCTGGGGGCGCTG GCGGCGGCAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig21138:127..4287+

>mRNA_H-paniculata_contig21138.5525.1 ID=mRNA_H-paniculata_contig21138.5525.1|Name=mRNA_H-paniculata_contig21138.5525.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2340bp|location=Sequence derived from alignment at H-paniculata_contig21138:127..4287+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGAGGAACGGCTCGGCACGTTTACCCACCCGAATTTCGTGACGACCGT
GCGCTTCCATCCATGGAACGACCACGTGTTTCTCACGGGCTGCTTCGATA
AACGCCTGCGGCTTTGGACTGTCCCCGACGGTAGGGTGGCGAATTGGGTC
CAGTGTCAGGACATGATCACGGCGGCAAATTTTTCGCCGGACGGACAGCT
CACGGCTGCTGGACTCAATGATGGCCGCGTGATGTTTTACCATACTACAG
ATCTTCGGTACTACACGCAGAGGGAGGAACGGCTCGGCACGTTTACCCAC
CCGAATTTCGTGACGACCGTGCGCTTCCATCCATGGAACGACCACGTGTT
TCTCACGGGCTGCTTCGATAAACGCCTGCGGCTTTGGACTGTCCCCGACG
GTAGGGTGGCGAATTGGGTCCAGTGTCAGGACATGATCACGGCGGCAAAT
TTTTCGCCGGACGGACAGCTCACGGCTGCTGGACTCAATGATGGCCGCGT
GATGTTTTACCATACTACAGATCTTCGGTACTACACGCAGCAGATCCACT
GCAGGAATCGACGCGGCGGTAATCGACACGGAAAAAAAGTAACGGGCTTG
GCCTTCGTCGAAACGGCCCAGTTGCGACATCGTCGGCAACCTCCCGGCGA
CCCCTCTCTTGTGCCCGCGCTATCGGCCGCTCAGGGAGGGGCGCGGGGCG
CGGAGGATGGCATGATGGCGGGCGGTGTCGATGTGTCGAGCGTGAGCGAT
GGGCAGCGAAGGGGGGGTAAGGCAGACAGCATGTCGGCGCAGTACAGTCT
GCTGTCTACGACTAATGACTCAAGATTAAGGGTCTACGACCTCGACAACT
TTGCCATGCAGATCCACTGCAGGAATCGACGCGGCGGTAATCGACACGGA
AAAAAAGTAACGGGCTTGGCCTTCGTCGAAACGGCCCAGTTGCGACATCG
TCGGCAACCTCCCGGCGACCCCTCTCTTGTGCCCGCGCTATCGGCCGCTC
AGGGAGGGGCGCGGGGCGCGGAGGATGGCATGATGGCGGGCGGTGTCGAT
GTGTCGAGCGTGAGCGATGGGCAGCGAAGGGGGGGTAAGGCAGACAGCAT
GTCGGCGCAGTACAGTCTGCTGTCTACGACTAATGACTCAAGATTAAGGG
TCTACGACCTCGACAACTTTGCCATGACCAGCAAATTCAAGGGTCTGCTG
AACGACGGCATGCAGATAAAGGGCAGCATCAGCGAGGATGGCAAGTTTGT
CATTTCGGGCTCGGAAGATGGACAGACCAGCAAATTCAAGGGTCTGCTGA
ACGACGGCATGCAGATAAAGGGCAGCATCAGCGAGGATGGCAAGTTTGTC
ATTTCGGGCTCGGAAGATGGACAGGTGTACATATGGAATTCAAAGCAAGG
ACCAAGCCGCCGCCCGAGTGGTCACTCGGTGTCTGGCGTCGGACCACCCA
TAGGGGTGGGAGGCGACGCAGCCGCCGCAGCACCGGCAACCGCTCGCGTG
AAATCACGAACGTCTTTGTCGTTCAGCGTGCAGTGCTCTGCACGACCGAG
GATAGCGACGGTTGCAGCGTTTGTCCCCGCTGCCGCGCTGCAATCGGTAC
TGAAAAGCTGGGATTTTTGCGACATTGAAATGTCGCGAAGAGGCAGAGGC
GAAGACGTGTACATATGGAATTCAAAGCAAGGACCAAGCCGCCGCCCGAG
TGGTCACTCGGTGTCTGGCGTCGGACCACCCATAGGGGTGGGAGGCGACG
CAGCCGCCGCAGCACCGGCAACCGCTCGCGTGAAATCACGAACGTCTTTG
TCGTTCAGCGTGCAGTGCTCTGCACGACCGAGGATAGCGACGGTTGCAGC
GTTTGTCCCCGCTGCCGCGCTGCAATCGGTACTGAAAAGCTGGGATTTTT
GCGACATTGAAATGTCGCGAAGAGGCAGAGGCGAAGACGAGGGGATCATT
AAGGGGAATCGAGGGTGGAGGGGTAGCCGTTTGCGAAGGTGTTCGGCGCC
CGTGGCGGCGGAATCTTTTGGAGAAGCTGCGGGGACGGCAGTCGGGGATG
GGGGCGTTGGCTTGATTCATCTCCGGAGAAGGAGATGGTCGTTCGCGGGG
CCAGGGCGGCTCGGCTCTGGGGGCGCTGGCGGCGGCAGCGAGGGGATCAT
TAAGGGGAATCGAGGGTGGAGGGGTAGCCGTTTGCGAAGGTGTTCGGCGC
CCGTGGCGGCGGAATCTTTTGGAGAAGCTGCGGGGACGGCAGTCGGGGAT
GGGGGCGTTGGCTTGATTCATCTCCGGAGAAGGAGATGGTCGTTCGCGGG
GCCAGGGCGGCTCGGCTCTGGGGGCGCTGGCGGCGGCAGC
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