mRNA_H-paniculata_contig21120.5520.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21120.5520.1
Unique NamemRNA_H-paniculata_contig21120.5520.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig21120.5520.1 vs. uniprot
Match: A0A6H5KIT4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KIT4_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 1.180e-30
Identity = 56/69 (81.16%), Postives = 61/69 (88.41%), Query Frame = 1
Query:    1 QGMQDTLDELRAMGVAFAIATTSPKPRVPASVHACGLDDYFPPDKIHSGESDFDPPRFKPDPSVYHKVC 207
            +GM DTLDEL+A  + FAIATTSPKPRVPASVHACGLD+YFP DKIHSGESDFDPPRFKPDPSVY +  
Sbjct:  235 EGMVDTLDELKARKIPFAIATTSPKPRVPASVHACGLDEYFPADKIHSGESDFDPPRFKPDPSVYLRAA 303          
BLAST of mRNA_H-paniculata_contig21120.5520.1 vs. uniprot
Match: A0A068B0R3_SACJA (Mannitol-1-phosphatase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A068B0R3_SACJA)

HSP 1 Score: 118 bits (295), Expect = 4.310e-30
Identity = 55/69 (79.71%), Postives = 60/69 (86.96%), Query Frame = 1
Query:    1 QGMQDTLDELRAMGVAFAIATTSPKPRVPASVHACGLDDYFPPDKIHSGESDFDPPRFKPDPSVYHKVC 207
            +GM + LDELRA  + FAIATTSPKPRVPAS+HACGLDDYFP DK+HSGESDFDPPRFKPDPSVY K  
Sbjct:  232 EGMVNALDELRARKLPFAIATTSPKPRVPASIHACGLDDYFPADKVHSGESDFDPPRFKPDPSVYLKAA 300          
BLAST of mRNA_H-paniculata_contig21120.5520.1 vs. uniprot
Match: A0A6H5KNB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNB9_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 3.420e-25
Identity = 48/68 (70.59%), Postives = 55/68 (80.88%), Query Frame = 1
Query:    4 GMQDTLDELRAMGVAFAIATTSPKPRVPASVHACGLDDYFPPDKIHSGESDFDPPRFKPDPSVYHKVC 207
            G+ + L  L A GVAF I+TTSPKPRVPAS+ AC LD+YFP DK+HSGESDFDPPRFKP+PSVY K  
Sbjct:   52 GVPEVLAALTAAGVAFCISTTSPKPRVPASITACKLDEYFPADKVHSGESDFDPPRFKPNPSVYLKAA 119          
BLAST of mRNA_H-paniculata_contig21120.5520.1 vs. uniprot
Match: A0A2Z4BXC0_SACJA (Mannitol-1-phosphatase 2 n=2 Tax=Saccharina japonica TaxID=88149 RepID=A0A2Z4BXC0_SACJA)

HSP 1 Score: 103 bits (258), Expect = 3.580e-25
Identity = 48/68 (70.59%), Postives = 56/68 (82.35%), Query Frame = 1
Query:    4 GMQDTLDELRAMGVAFAIATTSPKPRVPASVHACGLDDYFPPDKIHSGESDFDPPRFKPDPSVYHKVC 207
            G+++ L  L A  V F I+TTSPKPRVPAS+ ACGLD+YFPPDK+HSGESDFDPPRFKP+PSVY K  
Sbjct:  146 GVREVLAALTAATVPFCISTTSPKPRVPASITACGLDEYFPPDKVHSGESDFDPPRFKPNPSVYLKAA 213          
BLAST of mRNA_H-paniculata_contig21120.5520.1 vs. uniprot
Match: A0A836CC37_9STRA (Haloacid dehalogenase-like hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC37_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.540e-24
Identity = 46/70 (65.71%), Postives = 55/70 (78.57%), Query Frame = 1
Query:    1 QGMQDTLDELRAMGVAFAIATTSPKPRVPASVHACGLDDYFPPDKIHSGESDFDPPRFKPDPSVYHKVCG 210
            +GM+D L  L A GV FAI+TTSPKPRVP S+ +CG D++FPP K+HSGESDFDPPRFKP P VY +  G
Sbjct:  109 KGMRDALMSLTASGVPFAISTTSPKPRVPVSITSCGFDEFFPPHKVHSGESDFDPPRFKPAPDVYLRQGG 178          
BLAST of mRNA_H-paniculata_contig21120.5520.1 vs. uniprot
Match: D8LC90_ECTSI (Haloacid dehalogenase-like hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC90_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 1.930e-24
Identity = 48/68 (70.59%), Postives = 55/68 (80.88%), Query Frame = 1
Query:    4 GMQDTLDELRAMGVAFAIATTSPKPRVPASVHACGLDDYFPPDKIHSGESDFDPPRFKPDPSVYHKVC 207
            G+ + L  L A GVAF I+TTSPKPRVPAS+ AC LD+YFP DK+HSGESDFDPPRFKP+PSVY K  
Sbjct:  146 GVPEVLAALTAAGVAFCISTTSPKPRVPASITACKLDEYFPADKVHSGESDFDPPRFKPNPSVYLKAA 213          
BLAST of mRNA_H-paniculata_contig21120.5520.1 vs. uniprot
Match: A0A835ZES5_9STRA (Haloacid dehalogenase-like hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZES5_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 7.310e-23
Identity = 44/68 (64.71%), Postives = 53/68 (77.94%), Query Frame = 1
Query:    4 GMQDTLDELRAMGVAFAIATTSPKPRVPASVHACGLDDYFPPDKIHSGESDFDPPRFKPDPSVYHKVC 207
            G+ +TLDEL  MG+ F I+TTSPKPRVP S+ +CGLD +FP DK+HSGESDF PP+FKP P VY K  
Sbjct:  140 GIPETLDELVKMGIPFCISTTSPKPRVPVSISSCGLDHHFPADKVHSGESDFTPPKFKPAPDVYLKAA 207          
BLAST of mRNA_H-paniculata_contig21120.5520.1 vs. uniprot
Match: A0A7S0GRK8_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0GRK8_MICPS)

HSP 1 Score: 94.7 bits (234), Expect = 6.070e-22
Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = 1
Query:    4 GMQDTLDELRAMGVAFAIATTSPKPRVPASVHACGLDDYFPPDKIHSGESDFDPPRFKPDPSVY 195
            G+ +TL  L+A G  F+IATTS KPRVP SV AC  ++YFPP+ IHSGESDFDPPRFKPDPSVY
Sbjct:  111 GVPETLAALKANGTPFSIATTSGKPRVPVSVVACKFEEYFPPETIHSGESDFDPPRFKPDPSVY 174          
BLAST of mRNA_H-paniculata_contig21120.5520.1 vs. uniprot
Match: A0A7S1SLQ6_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SLQ6_9CHLO)

HSP 1 Score: 95.5 bits (236), Expect = 1.030e-21
Identity = 47/64 (73.44%), Postives = 53/64 (82.81%), Query Frame = 1
Query:    4 GMQDTLDELRAMGVAFAIATTSPKPRVPASVHACGLDDYFPPDKIHSGESDFDPPRFKPDPSVY 195
            G+++TL  L  MG+ FAIATTS KPRVP SV A GLD +F P+KIHSGESDFDPPRFKPDPSVY
Sbjct:  202 GVKETLKSLTDMGLKFAIATTSGKPRVPVSVIASGLDTWFSPEKIHSGESDFDPPRFKPDPSVY 265          
BLAST of mRNA_H-paniculata_contig21120.5520.1 vs. uniprot
Match: A0A061S8D2_9CHLO (Had-superfamily hydrolase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S8D2_9CHLO)

HSP 1 Score: 94.4 bits (233), Expect = 2.780e-21
Identity = 47/64 (73.44%), Postives = 52/64 (81.25%), Query Frame = 1
Query:    4 GMQDTLDELRAMGVAFAIATTSPKPRVPASVHACGLDDYFPPDKIHSGESDFDPPRFKPDPSVY 195
            G+++TL +L  MGV FAIATTS KPRVP SV A GL  +F P KIHSGESDFDPPRFKPDPSVY
Sbjct:  198 GVKETLGKLEEMGVRFAIATTSGKPRVPVSVKASGLSVWFSPGKIHSGESDFDPPRFKPDPSVY 261          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21120.5520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KIT4_9PHAE1.180e-3081.16Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A068B0R3_SACJA4.310e-3079.71Mannitol-1-phosphatase n=1 Tax=Saccharina japonica... [more]
A0A6H5KNB9_9PHAE3.420e-2570.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2Z4BXC0_SACJA3.580e-2570.59Mannitol-1-phosphatase 2 n=2 Tax=Saccharina japoni... [more]
A0A836CC37_9STRA1.540e-2465.71Haloacid dehalogenase-like hydrolase n=1 Tax=Tribo... [more]
D8LC90_ECTSI1.930e-2470.59Haloacid dehalogenase-like hydrolase n=1 Tax=Ectoc... [more]
A0A835ZES5_9STRA7.310e-2364.71Haloacid dehalogenase-like hydrolase n=1 Tax=Tribo... [more]
A0A7S0GRK8_MICPS6.070e-2270.31Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A7S1SLQ6_9CHLO1.030e-2173.44Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A061S8D2_9CHLO2.780e-2173.44Had-superfamily hydrolase n=1 Tax=Tetraselmis sp. ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21120contigH-paniculata_contig21120:352..564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.9
Seed ortholog evalue2.3e-25
Seed eggNOG ortholog2880.D7G792
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Haloacid dehalogenase-like hydrolase
EggNOG OGs2REF4@2759,COG0637@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size213
Cds size207
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929560.734265-UTR-H-paniculata_contig21120:351..3571622929560.734265-UTR-H-paniculata_contig21120:351..357Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21120 352..357 +
1691480914.2819834-UTR-H-paniculata_contig21120:351..3571691480914.2819834-UTR-H-paniculata_contig21120:351..357Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21120 352..357 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929560.7469907-CDS-H-paniculata_contig21120:357..5641622929560.7469907-CDS-H-paniculata_contig21120:357..564Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21120 358..564 +
1691480914.2913857-CDS-H-paniculata_contig21120:357..5641691480914.2913857-CDS-H-paniculata_contig21120:357..564Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21120 358..564 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21120.5520.1prot_H-paniculata_contig21120.5520.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21120 358..564 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21120.5520.1

>prot_H-paniculata_contig21120.5520.1 ID=prot_H-paniculata_contig21120.5520.1|Name=mRNA_H-paniculata_contig21120.5520.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
MQDTLDELRAMGVAFAIATTSPKPRVPASVHACGLDDYFPPDKIHSGESD
FDPPRFKPDPSVYHKVCG*
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mRNA from alignment at H-paniculata_contig21120:352..564+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21120.5520.1 ID=mRNA_H-paniculata_contig21120.5520.1|Name=mRNA_H-paniculata_contig21120.5520.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=213bp|location=Sequence derived from alignment at H-paniculata_contig21120:352..564+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGGATGCAGGACACCCTGGATGAGCTGAGAGCCATGGGAGTTGCATT TGCCATCGCGACAACCAGCCCCAAGCCCAGAGTCCCCGCTTCCGTGCACG CGTGCGGGCTAGATGACTACTTCCCGCCAGACAAGATCCACTCGGGCGAA AGCGACTTTGACCCTCCTCGTTTCAAGCCTGATCCTTCCGTGTATCACAA GGTTTGTGGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig21120:352..564+

>mRNA_H-paniculata_contig21120.5520.1 ID=mRNA_H-paniculata_contig21120.5520.1|Name=mRNA_H-paniculata_contig21120.5520.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig21120:352..564+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGACACCCTGGATGAGCTGAGAGCCATGGGAGTTGCATTTGCCAT
CGCGACAACCAGCCCCAAGCCCAGAGTCCCCGCTTCCGTGCACGCGTGCG
GGCTAGATGACTACTTCCCGCCAGACAAGATCCACTCGGGCGAAAGCGAC
TTTGACCCTCCTCGTTTCAAGCCTGATCCTTCCGTGTATCACAAGGTTTG
TGGGTGAATGCAGGACACCCTGGATGAGCTGAGAGCCATGGGAGTTGCAT
TTGCCATCGCGACAACCAGCCCCAAGCCCAGAGTCCCCGCTTCCGTGCAC
GCGTGCGGGCTAGATGACTACTTCCCGCCAGACAAGATCCACTCGGGCGA
AAGCGACTTTGACCCTCCTCGTTTCAAGCCTGATCCTTCCGTGTATCACA
AGGTTTGTGGGTGA
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