mRNA_H-paniculata_contig21120.5520.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig21120.5520.1 vs. uniprot
Match: A0A6H5KIT4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KIT4_9PHAE) HSP 1 Score: 119 bits (299), Expect = 1.180e-30 Identity = 56/69 (81.16%), Postives = 61/69 (88.41%), Query Frame = 1
Query: 1 QGMQDTLDELRAMGVAFAIATTSPKPRVPASVHACGLDDYFPPDKIHSGESDFDPPRFKPDPSVYHKVC 207
+GM DTLDEL+A + FAIATTSPKPRVPASVHACGLD+YFP DKIHSGESDFDPPRFKPDPSVY +
Sbjct: 235 EGMVDTLDELKARKIPFAIATTSPKPRVPASVHACGLDEYFPADKIHSGESDFDPPRFKPDPSVYLRAA 303
BLAST of mRNA_H-paniculata_contig21120.5520.1 vs. uniprot
Match: A0A068B0R3_SACJA (Mannitol-1-phosphatase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A068B0R3_SACJA) HSP 1 Score: 118 bits (295), Expect = 4.310e-30 Identity = 55/69 (79.71%), Postives = 60/69 (86.96%), Query Frame = 1
Query: 1 QGMQDTLDELRAMGVAFAIATTSPKPRVPASVHACGLDDYFPPDKIHSGESDFDPPRFKPDPSVYHKVC 207
+GM + LDELRA + FAIATTSPKPRVPAS+HACGLDDYFP DK+HSGESDFDPPRFKPDPSVY K
Sbjct: 232 EGMVNALDELRARKLPFAIATTSPKPRVPASIHACGLDDYFPADKVHSGESDFDPPRFKPDPSVYLKAA 300
BLAST of mRNA_H-paniculata_contig21120.5520.1 vs. uniprot
Match: A0A6H5KNB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNB9_9PHAE) HSP 1 Score: 102 bits (253), Expect = 3.420e-25 Identity = 48/68 (70.59%), Postives = 55/68 (80.88%), Query Frame = 1
Query: 4 GMQDTLDELRAMGVAFAIATTSPKPRVPASVHACGLDDYFPPDKIHSGESDFDPPRFKPDPSVYHKVC 207
G+ + L L A GVAF I+TTSPKPRVPAS+ AC LD+YFP DK+HSGESDFDPPRFKP+PSVY K
Sbjct: 52 GVPEVLAALTAAGVAFCISTTSPKPRVPASITACKLDEYFPADKVHSGESDFDPPRFKPNPSVYLKAA 119
BLAST of mRNA_H-paniculata_contig21120.5520.1 vs. uniprot
Match: A0A2Z4BXC0_SACJA (Mannitol-1-phosphatase 2 n=2 Tax=Saccharina japonica TaxID=88149 RepID=A0A2Z4BXC0_SACJA) HSP 1 Score: 103 bits (258), Expect = 3.580e-25 Identity = 48/68 (70.59%), Postives = 56/68 (82.35%), Query Frame = 1
Query: 4 GMQDTLDELRAMGVAFAIATTSPKPRVPASVHACGLDDYFPPDKIHSGESDFDPPRFKPDPSVYHKVC 207
G+++ L L A V F I+TTSPKPRVPAS+ ACGLD+YFPPDK+HSGESDFDPPRFKP+PSVY K
Sbjct: 146 GVREVLAALTAATVPFCISTTSPKPRVPASITACGLDEYFPPDKVHSGESDFDPPRFKPNPSVYLKAA 213
BLAST of mRNA_H-paniculata_contig21120.5520.1 vs. uniprot
Match: A0A836CC37_9STRA (Haloacid dehalogenase-like hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC37_9STRA) HSP 1 Score: 100 bits (249), Expect = 1.540e-24 Identity = 46/70 (65.71%), Postives = 55/70 (78.57%), Query Frame = 1
Query: 1 QGMQDTLDELRAMGVAFAIATTSPKPRVPASVHACGLDDYFPPDKIHSGESDFDPPRFKPDPSVYHKVCG 210
+GM+D L L A GV FAI+TTSPKPRVP S+ +CG D++FPP K+HSGESDFDPPRFKP P VY + G
Sbjct: 109 KGMRDALMSLTASGVPFAISTTSPKPRVPVSITSCGFDEFFPPHKVHSGESDFDPPRFKPAPDVYLRQGG 178
BLAST of mRNA_H-paniculata_contig21120.5520.1 vs. uniprot
Match: D8LC90_ECTSI (Haloacid dehalogenase-like hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC90_ECTSI) HSP 1 Score: 102 bits (253), Expect = 1.930e-24 Identity = 48/68 (70.59%), Postives = 55/68 (80.88%), Query Frame = 1
Query: 4 GMQDTLDELRAMGVAFAIATTSPKPRVPASVHACGLDDYFPPDKIHSGESDFDPPRFKPDPSVYHKVC 207
G+ + L L A GVAF I+TTSPKPRVPAS+ AC LD+YFP DK+HSGESDFDPPRFKP+PSVY K
Sbjct: 146 GVPEVLAALTAAGVAFCISTTSPKPRVPASITACKLDEYFPADKVHSGESDFDPPRFKPNPSVYLKAA 213
BLAST of mRNA_H-paniculata_contig21120.5520.1 vs. uniprot
Match: A0A835ZES5_9STRA (Haloacid dehalogenase-like hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZES5_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 7.310e-23 Identity = 44/68 (64.71%), Postives = 53/68 (77.94%), Query Frame = 1
Query: 4 GMQDTLDELRAMGVAFAIATTSPKPRVPASVHACGLDDYFPPDKIHSGESDFDPPRFKPDPSVYHKVC 207
G+ +TLDEL MG+ F I+TTSPKPRVP S+ +CGLD +FP DK+HSGESDF PP+FKP P VY K
Sbjct: 140 GIPETLDELVKMGIPFCISTTSPKPRVPVSISSCGLDHHFPADKVHSGESDFTPPKFKPAPDVYLKAA 207
BLAST of mRNA_H-paniculata_contig21120.5520.1 vs. uniprot
Match: A0A7S0GRK8_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0GRK8_MICPS) HSP 1 Score: 94.7 bits (234), Expect = 6.070e-22 Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = 1
Query: 4 GMQDTLDELRAMGVAFAIATTSPKPRVPASVHACGLDDYFPPDKIHSGESDFDPPRFKPDPSVY 195
G+ +TL L+A G F+IATTS KPRVP SV AC ++YFPP+ IHSGESDFDPPRFKPDPSVY
Sbjct: 111 GVPETLAALKANGTPFSIATTSGKPRVPVSVVACKFEEYFPPETIHSGESDFDPPRFKPDPSVY 174
BLAST of mRNA_H-paniculata_contig21120.5520.1 vs. uniprot
Match: A0A7S1SLQ6_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SLQ6_9CHLO) HSP 1 Score: 95.5 bits (236), Expect = 1.030e-21 Identity = 47/64 (73.44%), Postives = 53/64 (82.81%), Query Frame = 1
Query: 4 GMQDTLDELRAMGVAFAIATTSPKPRVPASVHACGLDDYFPPDKIHSGESDFDPPRFKPDPSVY 195
G+++TL L MG+ FAIATTS KPRVP SV A GLD +F P+KIHSGESDFDPPRFKPDPSVY
Sbjct: 202 GVKETLKSLTDMGLKFAIATTSGKPRVPVSVIASGLDTWFSPEKIHSGESDFDPPRFKPDPSVY 265
BLAST of mRNA_H-paniculata_contig21120.5520.1 vs. uniprot
Match: A0A061S8D2_9CHLO (Had-superfamily hydrolase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S8D2_9CHLO) HSP 1 Score: 94.4 bits (233), Expect = 2.780e-21 Identity = 47/64 (73.44%), Postives = 52/64 (81.25%), Query Frame = 1
Query: 4 GMQDTLDELRAMGVAFAIATTSPKPRVPASVHACGLDDYFPPDKIHSGESDFDPPRFKPDPSVY 195
G+++TL +L MGV FAIATTS KPRVP SV A GL +F P KIHSGESDFDPPRFKPDPSVY
Sbjct: 198 GVKETLGKLEEMGVRFAIATTSGKPRVPVSVKASGLSVWFSPGKIHSGESDFDPPRFKPDPSVY 261 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21120.5520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig21120.5520.1 >prot_H-paniculata_contig21120.5520.1 ID=prot_H-paniculata_contig21120.5520.1|Name=mRNA_H-paniculata_contig21120.5520.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp MQDTLDELRAMGVAFAIATTSPKPRVPASVHACGLDDYFPPDKIHSGESDback to top mRNA from alignment at H-paniculata_contig21120:352..564+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig21120.5520.1 ID=mRNA_H-paniculata_contig21120.5520.1|Name=mRNA_H-paniculata_contig21120.5520.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=213bp|location=Sequence derived from alignment at H-paniculata_contig21120:352..564+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig21120:352..564+ >mRNA_H-paniculata_contig21120.5520.1 ID=mRNA_H-paniculata_contig21120.5520.1|Name=mRNA_H-paniculata_contig21120.5520.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig21120:352..564+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |