mRNA_H-paniculata_contig211.5513.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig211.5513.1
Unique NamemRNA_H-paniculata_contig211.5513.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig211.5513.1 vs. uniprot
Match: D7FSX9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSX9_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 7.830e-20
Identity = 61/116 (52.59%), Postives = 74/116 (63.79%), Query Frame = 1 
Query:   82 IYEGEYMVVDGAVVRHGNGKQVDGKDTYAGEWHYDAMHGKGAMSFGSDATYRGSFVGNKFDGFGRYEWPDGAAXXXXXXXXXXXXXXXXMDSKKSRWDGEFFNGMFDNGRSMIALR 429
            + EG+Y+V+DG   R+G G   +GKD Y GEW  D+MHG+G M F SDA+YRGSF G                XXXXXXXXXXXXXXXX         G+FFNGM+DNGR+ +ALR
Sbjct:   16 LSEGQYIVIDGVKKRNGFGTHTNGKDKYIGEWQLDSMHGQGEMIFSSDASYRGSFAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDFFNGMYDNGRAKVALR 131
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BLAST of mRNA_H-paniculata_contig211.5513.1 vs. uniprot
Match: A0A7S2V7Z2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V7Z2_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 5.760e-17
Identity = 61/131 (46.56%), Postives = 77/131 (58.78%), Query Frame = 1 
Query:   37 EPETGRGKFVFPGGSIYEGEYMVVDGAVVRHGNGKQVDGKDTYAGEWHYDAMHGKGAMSFGSDATYRGSFVGNKFDGFGRYEWPDGAAXXXXXXXXXXXXXXXXMDSKKSRWDGEFFNGMFDNGRSMIALR 429
            EP+TG G F F  G+ Y+GE++   G  +RHG GK VDG ++Y G W +D+MHG+G M F S A        N+F             XXXXXXXXXXXXXXXX         G+F+NG F+NGRS + LR
Sbjct:   16 EPDTGTGHFCFVDGARYDGEWINNGGKKMRHGQGKFVDGPESYEGHWAHDSMHGQGKMCFASGAVXXXXXXKNQFYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGQFYNGKFNNGRSYVMLR 146
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BLAST of mRNA_H-paniculata_contig211.5513.1 vs. uniprot
Match: A0A7S3SY57_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SY57_9SPIT)

HSP 1 Score: 65.9 bits (159), Expect = 8.530e-11
Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = 1 
Query:   16 EEEGVLPEPETGRGKFVFPGGSIYEGEYMVVDGAVVRHGNGKQVDG---KDTYAGEWHYDAMHGKGAMSFGS 222
            EE+    EP+ G+G F+ P GS Y+G++++VDG   RHG+G  +DG     +Y GEW  D MHG+G   + S
Sbjct:   12 EEDSEPFEPQEGKGAFLLPDGSKYDGDWIIVDGVRQRHGHGLYIDGIVKGQSYQGEWQNDKMHGRGVFRYAS 83
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BLAST of mRNA_H-paniculata_contig211.5513.1 vs. uniprot
Match: A0A0D2LVS0_9CHLO (MORN repeat-containing protein 2 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2LVS0_9CHLO)

HSP 1 Score: 55.8 bits (133), Expect = 7.500e-7
Identity = 33/92 (35.87%), Postives = 41/92 (44.57%), Query Frame = 1 
Query:   43 ETGRGKFVFPGGSIYEGEYMVVDGAV----------------------------VRHGNGKQVDGKDTYAGEWHYDAMHGKGAMSFGSDATY 234
            E+G G+F +P GS YEG+Y VV+                               VRHGNG    G  +YAG+W  DAM G+G   F S A Y
Sbjct:   21 ESGSGRFFYPDGSTYEGDYRVVNVLPAAPEGPRKSSXXXXXXXXXXXPAEPPKRVRHGNGTYTCGAYSYAGDWQEDAMQGQGRFQFASGAVY 112
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BLAST of mRNA_H-paniculata_contig211.5513.1 vs. uniprot
Match: D8RB44_SELML (Uncharacterized protein n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RB44_SELML)

HSP 1 Score: 52.0 bits (123), Expect = 1.520e-5
Identity = 30/83 (36.14%), Postives = 40/83 (48.19%), Query Frame = 1 
Query:   37 EPETGRGKFVFPGGSIYEGEYMV------VDGAV-------------VRHGNGKQVDGKDTYAGEWHYDAMHGKGAMSFGSDA 228
            EP    GKF +PGG  YEG++++      V GA              +R G G  +DG  +Y GEW  D MHG G+  + S A
Sbjct:    7 EPVKSTGKFYYPGGGTYEGDWILQPPLPPVPGAPPPADPAAADKPKRLRDGKGHYIDGNYSYEGEWKNDLMHGPGSFKYASGA 89
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BLAST of mRNA_H-paniculata_contig211.5513.1 vs. uniprot
Match: A0A2K1KBC7_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KBC7_PHYPA)

HSP 1 Score: 52.0 bits (123), Expect = 2.200e-5
Identity = 30/90 (33.33%), Postives = 41/90 (45.56%), Query Frame = 1 
Query:   46 TGRGKFVFPGGSIYEGEYMVV----DGAVV------------------------RHGNGKQVDGKDTYAGEWHYDAMHGKGAMSFGSDAT 231
            +G GKF +P G+ YEG+++VV    +G                           RHG G  +DG   Y GEW YD MHG+G   + S A+
Sbjct:   27 SGAGKFFYPTGATYEGDWVVVAEVDEGVPATPXXXXXXXXXXHPPLEQMRPNRQRHGKGVYIDGNYQYNGEWKYDKMHGQGCFKYESGAS 116
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig211.5513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FSX9_ECTSI7.830e-2052.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2V7Z2_9STRA5.760e-1746.56Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3SY57_9SPIT8.530e-1143.06Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
A0A0D2LVS0_9CHLO7.500e-735.87MORN repeat-containing protein 2 n=1 Tax=Monoraphi... [more]
D8RB44_SELML1.520e-536.14Uncharacterized protein n=2 Tax=Selaginella moelle... [more]
A0A2K1KBC7_PHYPA2.200e-533.33Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig211contigH-paniculata_contig211:32990..35789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue1.7e-11
Seed eggNOG ortholog157072.XP_008862129.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG5253@1,KOG0229@2759
Ec32 ortholog descriptionMORN motif
Ec32 orthologEc-27_006760.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size432
Cds size426
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig211.5513.1prot_H-paniculata_contig211.5513.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig211 32996..35789 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929559.7434883-UTR-H-paniculata_contig211:32989..329951622929559.7434883-UTR-H-paniculata_contig211:32989..32995Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig211 32990..32995 +
1691480913.8724697-UTR-H-paniculata_contig211:32989..329951691480913.8724697-UTR-H-paniculata_contig211:32989..32995Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig211 32990..32995 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929559.7644114-CDS-H-paniculata_contig211:32995..330771622929559.7644114-CDS-H-paniculata_contig211:32995..33077Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig211 32996..33077 +
1691480913.8815637-CDS-H-paniculata_contig211:32995..330771691480913.8815637-CDS-H-paniculata_contig211:32995..33077Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig211 32996..33077 +
1622929559.7818117-CDS-H-paniculata_contig211:33478..335921622929559.7818117-CDS-H-paniculata_contig211:33478..33592Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig211 33479..33592 +
1691480913.891554-CDS-H-paniculata_contig211:33478..335921691480913.891554-CDS-H-paniculata_contig211:33478..33592Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig211 33479..33592 +
1622929559.7962487-CDS-H-paniculata_contig211:34817..349411622929559.7962487-CDS-H-paniculata_contig211:34817..34941Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig211 34818..34941 +
1691480913.8996215-CDS-H-paniculata_contig211:34817..349411691480913.8996215-CDS-H-paniculata_contig211:34817..34941Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig211 34818..34941 +
1622929559.8146167-CDS-H-paniculata_contig211:35683..357891622929559.8146167-CDS-H-paniculata_contig211:35683..35789Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig211 35684..35789 +
1691480913.9080892-CDS-H-paniculata_contig211:35683..357891691480913.9080892-CDS-H-paniculata_contig211:35683..35789Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig211 35684..35789 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig211.5513.1

>prot_H-paniculata_contig211.5513.1 ID=prot_H-paniculata_contig211.5513.1|Name=mRNA_H-paniculata_contig211.5513.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=142bp
MDKEEEGVLPEPETGRGKFVFPGGSIYEGEYMVVDGAVVRHGNGKQVDGK
DTYAGEWHYDAMHGKGAMSFGSDATYRGSFVGNKFDGFGRYEWPDGAAYE
GLWRENKMHGRGCYMDSKKSRWDGEFFNGMFDNGRSMIALR*
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mRNA from alignment at H-paniculata_contig211:32990..35789+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig211.5513.1 ID=mRNA_H-paniculata_contig211.5513.1|Name=mRNA_H-paniculata_contig211.5513.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2800bp|location=Sequence derived from alignment at H-paniculata_contig211:32990..35789+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCGACATGGACAAGGAAGAAGAGGGGGTTCTACCAGAGCCGGAAACAGG
TCGAGGGAAGTTCGTTTTTCCGGGCGGTTCAATATACGGTGAGATTATAT
ACTCTGAATCGATGCCAACAACTTGCCTATTTACCGCACCGGCGTGTTGC
GACACAGTGAACCAAATAGTAGTGATAATCAATTGAGCACCAAGCCGTAC
TTTGGATATAGACAATGCCGCCGCCGCCCACTTCGAACCACAGCATTGTA
TTTAGTTGGCTCAAGTGAATGTTATACACTTGTTCTCCAGGTATCTGAGG
TGGCAATATAGAGACACAGGGAGTCATCCTACGGTAGGGGGGGGGGGTCA
ATTGTTTAACGAAGGTCGCTTCGCAAAAGTGATAACACGACACACCTGAG
TTGGCGTTCGCTTAATCGTTGAGATCCACCTGCCTTTCGAAAGATCAAGT
ACTAATACTGCATGGTGAAATATCCGTTATGTTTGGCAGAGGGCGAGTAC
ATGGTGGTGGACGGCGCTGTGGTACGACATGGGAACGGCAAGCAAGTGGA
CGGGAAAGACACGTACGCCGGAGAGTGGCACTACGACGCCATGCACGGCA
AAGGTAACATGCTGAGGGTGAGGCAGAGCCCTGTGGGGAAGAAATGCCGA
GCACTGCACTGCACGTTGGGTATGATGACTTTGGACCAACTAGATCTCTG
CACGAATCCACCAGCGATTCTCGATAAAAACGGCAAGGGGGGGCATAGAC
TCGATTTTCGGATAACCCTGTTCCCCCTCCTCCCCGGTGAAGATATTTAC
AAAATGTGCCTCTAAAAGTTGAAAAATATATAGACGTTTTTGCTGTCTAT
CCAAGGTTTCTGTTAGAGCTTTGACTATTCGTCCGATCAATGTACATGCA
ATACCATGAAGTCCTGTTGTGTATACTTCGCACACCTTTCTGGTTTCTTG
TGATCGAAATATGTCATCTCCGAAGTACAATAAATATCACTTGTTCAATA
TGATGTGGCCTCTTATTGATCGGCGTCTATAACCTGTAATATTATGCATG
AGTAGTGGGGCCGCATTAGTAAAACTTTGCGCTGCTCGCGAGGAAATCAG
CTCTCCTCGCCCATCCTCGTCAGCAAACGTTATTGTTGGTGTTCTGTGAT
CTTCTCAAGCATCGATCCGCCTCCGACCCATATAGACAGTAGATATGCTC
AGGTGTGACTCCATCTCTACTGGAGTGGGGCAGGTTACAGGCAAGCAAGG
GGCGTCTTGGCATACCACTTGGTTTGTGCATGATGCAGCGTACACAAAGC
ATGATATTATGGGCTTCAGATATTTTGTCCCCCCCTCCTACCCTTAATTG
TTTTCTAACTATCGTAACCTTATGTACTGAGTTTCAGAAGATGGGAGTCC
GTTGACAACGGGGAAGAATACATGTGTCGCCAGAGGAAGTTAAATGTGAG
AGGCCAGATGGCGTTGTGTCAGTGAATAACACCTGGGTATGCTGATAGGA
AACGACCCGAGCGTTCTAGCGGAACAATATATCAAGAGCATTCACAAAAA
AACTATGTCCTAACCGGACCAAATACGAAATAGTTCAAATCATAGTATTC
ACCATATGCCGACAGAGATATTGCATCCAGCAATCTTCAGGAGCCGCCTG
AAGTCAATTCTGCGCGGTGAGGAAATCATAATTTTGACCTTCTGCGTGCC
ATCTTACAAATCGTACCACGTCGCGTATTCGGTGATGATAAGTTGCTAAA
CAATTTTGCTTCGTCGCTGTGATGTGCTGCCACACATTGTTCTTCTATGT
ATTTGTGTCTGTATATTTATGTACACAGGTGCGATGTCTTTCGGGTCCGA
TGCAACCTACCGAGGATCTTTCGTGGGGAACAAATTCGACGGTTTCGGGA
GATACGAATGGCCTGACGGAGCGGCATACGAGGGACTTTGGAGAGAGAAC
AAGTAAGTGCACTATTTATCCGTGGTGAAACAAGTTGGAGATCCATAATC
GCAAGGAAAACTTGCGCAGAAGCCCACCGAGAAAACGTCCCAGGCCCAGG
ATTATCGGCATGCTGTCCACCAAAATGTGTAGGCTGTTGTGCGTTGAGCT
GAGGTCATTTAGGCACAGCAAAGTCCCCAAGAAAAATATCCCCAAGGCTA
AGTCTTGCACTGCAGGGATCATTGCGTTGTTTTTTTTAACCGCCGGAAGG
CTGAGGCAAAACCCTTTACCGATGCTTCCATACTTCAGTATTTCTACATT
CCCTTAAACAGAACAGAGTTATTTGTTCCTCTGCGGGGTAGGCGCCACCC
TGGTTCGGCCGAACCAAGTAGACAGTGTGGGTGTTGCACCCACTAAAAGA
CCTCTGACTAGACTTCCGGTTATGCTCAGTTCACGAGCCACCCTACCCGT
TCGAGCGTAGGTCCGTGGTGCGTTGTATGTTGCAGCTGGCGATGACCTTT
TCTCGGACTCAATTTTCTCTCAAACAATAGCGCTCGTGATCCCAAATGAT
GTATCGCTAGAACGATCTCGTCGAGATGTCATTAGACAGGCGTGATCTAT
CGACAATTCGATGTCTCGCGTCTCGAATAGCTCGAGTTTGACGATGCGGA
CCACCTCAAGTGTCATACCCTGTAAATTAAGGTAGCTGTACTGAGAGCGC
ACACATGCCCCAAATCCACCCGCTCTTCTGACGGTCTGTCACAGGATGCA
TGGGCGGGGCTGCTATATGGACAGCAAAAAGAGTCGTTGGGATGGAGAAT
TTTTCAACGGAATGTTCGACAACGGGCGCTCGATGATCGCACTACGATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig211:32990..35789+

>mRNA_H-paniculata_contig211.5513.1 ID=mRNA_H-paniculata_contig211.5513.1|Name=mRNA_H-paniculata_contig211.5513.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=852bp|location=Sequence derived from alignment at H-paniculata_contig211:32990..35789+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACAAGGAAGAAGAGGGGGTTCTACCAGAGCCGGAAACAGGTCGAGG
GAAGTTCGTTTTTCCGGGCGGTTCAATATACGATGGACAAGGAAGAAGAG
GGGGTTCTACCAGAGCCGGAAACAGGTCGAGGGAAGTTCGTTTTTCCGGG
CGGTTCAATATACGAGGGCGAGTACATGGTGGTGGACGGCGCTGTGGTAC
GACATGGGAACGGCAAGCAAGTGGACGGGAAAGACACGTACGCCGGAGAG
TGGCACTACGACGCCATGCACGGCAAAGAGGGCGAGTACATGGTGGTGGA
CGGCGCTGTGGTACGACATGGGAACGGCAAGCAAGTGGACGGGAAAGACA
CGTACGCCGGAGAGTGGCACTACGACGCCATGCACGGCAAAGGTGCGATG
TCTTTCGGGTCCGATGCAACCTACCGAGGATCTTTCGTGGGGAACAAATT
CGACGGTTTCGGGAGATACGAATGGCCTGACGGAGCGGCATACGAGGGAC
TTTGGAGAGAGAACAAGTGCGATGTCTTTCGGGTCCGATGCAACCTACCG
AGGATCTTTCGTGGGGAACAAATTCGACGGTTTCGGGAGATACGAATGGC
CTGACGGAGCGGCATACGAGGGACTTTGGAGAGAGAACAAGATGCATGGG
CGGGGCTGCTATATGGACAGCAAAAAGAGTCGTTGGGATGGAGAATTTTT
CAACGGAATGTTCGACAACGGGCGCTCGATGATCGCACTACGATGAGATG
CATGGGCGGGGCTGCTATATGGACAGCAAAAAGAGTCGTTGGGATGGAGA
ATTTTTCAACGGAATGTTCGACAACGGGCGCTCGATGATCGCACTACGAT
GA
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