mRNA_H-paniculata_contig21099.5511.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21099.5511.1
Unique NamemRNA_H-paniculata_contig21099.5511.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig21099.5511.1 vs. uniprot
Match: A0A6H5L8A9_9PHAE (HTTM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L8A9_9PHAE)

HSP 1 Score: 309 bits (792), Expect = 3.440e-94
Identity = 218/410 (53.17%), Postives = 255/410 (62.20%), Query Frame = 1 
Query:    1 QAVAVRINVTVVFFDLFLGVSLLAAPHYRPAGLALQTALHLSRAVTGPSNARAWHFLIAASGILFIDHNMLQETLERIQTWLQPAVSFDKGGRPRGGGTARATGGGRRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIQ-------------------------------KKKQRPLQPRPSSATAALIFGYVLVQMVVPLRHLATEFPVEWSRDGQEFSWRGGGGTGGRAGSGGLVTEEALVRIVHRSRGAGRREGTAAAAAVAGDVQTVHLYGAPLTAQQVLRLVLDPDMLRQLARRTAESITTSTKSPKQADNDKAKENGNNMGPKIIRTPPYSHVDAWKSINRRPFSPWIDPTVDVWDARFGGDGPAPGDWLESPPSDDELGRAASTIEVCLV 1137
            QA+A R N +++F DLFLG+SLLA+PHYRPA + LQTA+HL+ AV G  +ARAWH LI A+GILF+D   LQ  +ER+Q WLQP V      R       R  GGG RG            XXXXXXXXXXXXXXXXXXXXXXXXXX                                     KK+ PLQPRPSS  AALI  YVL+Q+++PLRH    FPVEWSR+G EFSWR GGG GGR G GGLV +E+LVR++HR RG    +G  +AAA    VQT+ LYGAPLTAQQVLRLVLDPDML Q A++TAE                A E+G     K  + P  SHVDAWKSIN RPF+ WIDP+VDVWDARF G+GP   +WL+SPP   EL RAA  +E   V
Sbjct:  298 QALATRANGSMIFLDLFLGLSLLASPHYRPAAVVLQTAVHLASAVFGRPDARAWHLLIVATGILFVDPAGLQGAVERVQAWLQPEVPRGTSAR-YAAAARRGRGGGARGVGRRQPCESRSTXXXXXXXXXXXXXXXXXXXXXXXXXXSGTDAGXXXXXXXXXXXXXXXXTGSRNSGAEGVAPPPKKKLPLQPRPSSPVAALISLYVLLQVLLPLRHALGAFPVEWSREGHEFSWRAGGGVGGRGGGGGLVRDESLVRVMHRPRGRDGGQGMGSAAA---GVQTIRLYGAPLTAQQVLRLVLDPDMLLQFAKKTAEINA-------------AAEHGQQQKGKP-QLPAASHVDAWKSINGRPFTRWIDPSVDVWDARFEGEGPPNVEWLQSPPLQAELDRAAGVMEAVRV 689
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21099.5511.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L8A9_9PHAE3.440e-9453.17HTTM domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21099contigH-paniculata_contig21099:1537..3881 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score77.4
Seed ortholog evalue1.6e-11
Seed eggNOG ortholog7739.XP_002604583.1
Preferred nameGGCX
KEGG rclassRC01278,RC02133
KEGG koko:K10106
KEGG ReactionR05144,R09991
KEGG Pathwayko00130,ko01110,map00130,map01110
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006807,GO:0006950,GO:0007275,GO:0007584,GO:0007596,GO:0007599,GO:0008150,GO:0008152,GO:0008488,GO:0009410,GO:0009605,GO:0009611,GO:0009628,GO:0009719,GO:0009725,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010042,GO:0012505,GO:0014070,GO:0016020,GO:0016021,GO:0016829,GO:0016830,GO:0016831,GO:0017187,GO:0018193,GO:0018200,GO:0018214,GO:0019538,GO:0019842,GO:0030323,GO:0030324,GO:0031224,GO:0031667,GO:0031960,GO:0031984,GO:0032501,GO:0032502,GO:0032571,GO:0033218,GO:0033273,GO:0033280,GO:0033993,GO:0035265,GO:0035295,GO:0036094,GO:0036211,GO:0040007,GO:0042060,GO:0042175,GO:0042221,GO:0042277,GO:0042493,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0048513,GO:0048545,GO:0048589,GO:0048731,GO:0048856,GO:0050817,GO:0050878,GO:0050896,GO:0051384,GO:0060437,GO:0060541,GO:0065007,GO:0065008,GO:0070482,GO:0071107,GO:0071548,GO:0071704,GO:0097327,GO:0098827,GO:1901564,GO:1901654,GO:1901700,GO:1904016
EggNOG free text desc.gamma-glutamyl carboxylase activity
EggNOG OGs28JF2@1,2QRU2@2759,38G5R@33154,3BAHU@33208,3CY3U@33213,482JU@7711
Ec32 ortholog descriptionVitamin K-dependent gamma-carboxylase
Ec32 orthologEc-04_006120.1
EC4.1.1.90
COG Functional cat.S
Best tax levelChordata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons3
Model size1167
Cds size1167
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21099.5511.1prot_H-paniculata_contig21099.5511.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21099 1537..3881 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929559.1692903-CDS-H-paniculata_contig21099:1536..19111622929559.1692903-CDS-H-paniculata_contig21099:1536..1911Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21099 1537..1911 -
1691480913.4759724-CDS-H-paniculata_contig21099:1536..19111691480913.4759724-CDS-H-paniculata_contig21099:1536..1911Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21099 1537..1911 -
1622929559.185931-CDS-H-paniculata_contig21099:3050..31241622929559.185931-CDS-H-paniculata_contig21099:3050..3124Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21099 3051..3124 -
1691480913.4888127-CDS-H-paniculata_contig21099:3050..31241691480913.4888127-CDS-H-paniculata_contig21099:3050..3124Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21099 3051..3124 -
1622929559.1997228-CDS-H-paniculata_contig21099:3163..38811622929559.1997228-CDS-H-paniculata_contig21099:3163..3881Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21099 3164..3881 -
1691480913.4994469-CDS-H-paniculata_contig21099:3163..38811691480913.4994469-CDS-H-paniculata_contig21099:3163..3881Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21099 3164..3881 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21099.5511.1

>prot_H-paniculata_contig21099.5511.1 ID=prot_H-paniculata_contig21099.5511.1|Name=mRNA_H-paniculata_contig21099.5511.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=389bp
QAVAVRINVTVVFFDLFLGVSLLAAPHYRPAGLALQTALHLSRAVTGPSN
ARAWHFLIAASGILFIDHNMLQETLERIQTWLQPAVSFDKGGRPRGGGTA
RATGGGRRGRGRGTSSSMGEAAAAAVAAAAAGGGTAAAGSAASATSSPIA
IQKKKQRPLQPRPSSATAALIFGYVLVQMVVPLRHLATEFPVEWSRDGQE
FSWRGGGGTGGRAGSGGLVTEEALVRIVHRSRGAGRREGTAAAAAVAGDV
QTVHLYGAPLTAQQVLRLVLDPDMLRQLARRTAESITTSTKSPKQADNDK
AKENGNNMGPKIIRTPPYSHVDAWKSINRRPFSPWIDPTVDVWDARFGGD
GPAPGDWLESPPSDDELGRAASTIEVCLVVLYYVLFVL*
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mRNA from alignment at H-paniculata_contig21099:1537..3881-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21099.5511.1 ID=mRNA_H-paniculata_contig21099.5511.1|Name=mRNA_H-paniculata_contig21099.5511.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2345bp|location=Sequence derived from alignment at H-paniculata_contig21099:1537..3881- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCCGTGGCCGTGCGCATCAACGTGACCGTAGTATTCTTCGACCTCTT
CCTGGGAGTATCCCTCTTGGCGGCACCTCACTACCGACCGGCAGGCCTAG
CCCTCCAGACCGCTCTCCATCTCTCCCGCGCCGTCACAGGACCTAGCAAT
GCCCGCGCCTGGCACTTCCTCATCGCCGCGTCGGGGATCCTCTTCATCGA
TCACAACATGCTGCAAGAGACCCTAGAGCGCATCCAAACCTGGCTCCAGC
CTGCCGTGTCGTTTGACAAGGGCGGAAGGCCTCGTGGAGGTGGTACTGCA
CGGGCGACGGGCGGGGGTAGGCGAGGGCGAGGGCGGGGCACTAGTAGCAG
TATGGGAGAAGCGGCAGCAGCAGCAGTGGCGGCGGCAGCAGCGGGTGGTG
GAACAGCAGCAGCAGGATCAGCGGCGTCGGCGACATCGTCGCCGATAGCT
ATCCAGAAGAAGAAACAACGACCCTTGCAGCCAAGACCGAGCTCGGCCAC
CGCTGCTTTGATTTTTGGCTACGTTTTAGTCCAGATGGTGGTGCCCCTGC
GGCATCTCGCGACTGAATTCCCCGTGGAGTGGAGTCGCGACGGACAAGAG
TTCTCGTGGAGGGGCGGCGGCGGCACCGGGGGGAGGGCGGGCAGCGGAGG
GCTGGTTACGGAGGAGGCGCTGGTGAGGATTGTGCACCGTTCGCGAGGGG
CAGGGAGAAGAGAAGGGAGTGATTCGGGTTCGCGTTCCCGTTCGCGGAAG
TCTCAAGCGGCTGCCGCAGCGGCGGTGGCGGGGGATGTGCAAACTGTACA
TTTGTACGGGGCGCCACTTACTGCGCAGCAGGTGCGTGGATAGTTTAGTA
GGGGGGGGGGTAAGGGGGGAGAGGAGGGGGGTACGCTCTGTGATTTTGTT
ATTGCGGAATAACGTATCCAGGAACCGACAGCACTAAGGCGGGTGCGTGG
GGCTGGGGGGGAGGGAGGCTTGTGTGTATGTGTGTATGTGTGTATGTGTG
TGTGTGTGCTTTGCCGTCCTTGTTTTCTCTTGCTCTGCGTTTTGGTGTTC
GCTAAGATAGCAGGAAGGATTGTGTGCATGTATGTGAACTGTTGTTGTTT
ATTGGACAAGGATTTTGGATTTCATGCCCCCCGGAATAATAAATGCGGAT
GGATAGTAGGAGCCTTTGCGACGGGACTGTAAAAAGGATTTTCCTAAAAG
CCGGTCGAGCATATATATATATATATATATATATATATTTTTTTTTTTAT
GTACCCCGGACGACTGGTCCTTCTGTGTGTTAGTGAAAGGAGTAAACATG
GGTACAGCGGTCCTTAAAGTGCCTGCACATGAAGCTCAGGCCTTTTTTTT
CTTCCGTCGGTTATGCTCCAAGATTTGGTATTTGCCAGTGAGGTGAAGGA
TTTCACGGGAATGCCTGTTTTCTCGCTGTGAGGTTGTGTTGGAAGGGAAG
GGTCGTTCGTGTATCGGGAGTGGGAGGTGGGGTGCTGCGTTTGCGAATCA
AAGATTGCTTTTTTTTTTCTTTACACCAAGAAAAACATGAGCTCTGATTT
TGACCACGCTAGCCAGAGATTTTCGTTTAATTGTAAATGTGTTGTATGAT
TTGAGTATCCGTTCCTCCGCCCAAGTATTTGAAGCTCGTTCATTTTGCAC
TGTTGCAAATAATGGTCGAGTTACAATACATCGATACAAAGAAAGGCTTC
AACGGAGTACCACTTTATGCGCTCTTCGTGAGGATGCCTGTGATGAAGGT
CACGACAGGGGGGCTCAGTTTATTAGGTCGTAGGCCACACGCTGCGTACC
GCTAGTGGAAACGTTAACTCGTACGTCTCTCTTGTGTAATAGATGATAAA
ACAAGCCTTTTATAAGTGAACCAATCATCCATCGATATCTCTCTTTTCTC
TTTTCAAGTTCATCTTTCTTGCGATCCCCCCCCCCTCCCCCCGTATTTAA
TTTTTTGCCGAGAAAAATAGGTGCTACGCTTGGTGCTGGACCCCGACATG
CTGCGGCAGCTCGCCAGGCGGACAGCGGAAAGCATCACCACATCTACCAA
ATCTCCAAAGCAAGCCGACAACGACAAGGCAAAGGAGAACGGCAACAATA
TGGGGCCGAAAATTATTCGCACCCCGCCCTACTCTCACGTAGACGCTTGG
AAATCGATCAACCGTAGGCCCTTTTCTCCCTGGATAGATCCCACCGTGGA
TGTGTGGGACGCCAGGTTCGGCGGGGATGGCCCTGCGCCCGGCGATTGGT
TGGAATCTCCGCCCTCGGATGACGAGCTGGGCAGAGCTGCGTCGACCATC
GAGGTGTGTTTGGTTGTGTTATATTATGTGTTGTTTGTATTGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig21099:1537..3881-

>mRNA_H-paniculata_contig21099.5511.1 ID=mRNA_H-paniculata_contig21099.5511.1|Name=mRNA_H-paniculata_contig21099.5511.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2334bp|location=Sequence derived from alignment at H-paniculata_contig21099:1537..3881- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCCGTGGCCGTGCGCATCAACGTGACCGTAGTATTCTTCGACCTCTT
CCTGGGAGTATCCCTCTTGGCGGCACCTCACTACCGACCGGCAGGCCTAG
CCCTCCAGACCGCTCTCCATCTCTCCCGCGCCGTCACAGGACCTAGCAAT
GCCCGCGCCTGGCACTTCCTCATCGCCGCGTCGGGGATCCTCTTCATCGA
TCACAACATGCTGCAAGAGACCCTAGAGCGCATCCAAACCTGGCTCCAGC
CTGCCGTGTCGTTTGACAAGGGCGGAAGGCCTCGTGGAGGTGGTACTGCA
CGGGCGACGGGCGGGGGTAGGCGAGGGCGAGGGCGGGGCACTAGTAGCAG
TATGGGAGAAGCGGCAGCAGCAGCAGTGGCGGCGGCAGCAGCGGGTGGTG
GAACAGCAGCAGCAGGATCAGCGGCGTCGGCGACATCGTCGCCGATAGCT
ATCCAGAAGAAGAAACAACGACCCTTGCAGCCAAGACCGAGCTCGGCCAC
CGCTGCTTTGATTTTTGGCTACGTTTTAGTCCAGATGGTGGTGCCCCTGC
GGCATCTCGCGACTGAATTCCCCGTGGAGTGGAGTCGCGACGGACAAGAG
TTCTCGTGGAGGGGCGGCGGCGGCACCGGGGGGAGGGCGGGCAGCGGAGG
GCTGGTTACGGAGGAGGCGCTGGTGAGGATTGTGCACCGTTCGCGAGGGG
CAGGGAGAAGAGAAGGGACAGGCCGTGGCCGTGCGCATCAACGTGACCGT
AGTATTCTTCGACCTCTTCCTGGGAGTATCCCTCTTGGCGGCACCTCACT
ACCGACCGGCAGGCCTAGCCCTCCAGACCGCTCTCCATCTCTCCCGCGCC
GTCACAGGACCTAGCAATGCCCGCGCCTGGCACTTCCTCATCGCCGCGTC
GGGGATCCTCTTCATCGATCACAACATGCTGCAAGAGACCCTAGAGCGCA
TCCAAACCTGGCTCCAGCCTGCCGTGTCGTTTGACAAGGGCGGAAGGCCT
CGTGGAGGTGGTACTGCACGGGCGACGGGCGGGGGTAGGCGAGGGCGAGG
GCGGGGCACTAGTAGCAGTATGGGAGAAGCGGCAGCAGCAGCAGTGGCGG
CGGCAGCAGCGGGTGGTGGAACAGCAGCAGCAGGATCAGCGGCGTCGGCG
ACATCGTCGCCGATAGCTATCCAGAAGAAGAAACAACGACCCTTGCAGCC
AAGACCGAGCTCGGCCACCGCTGCTTTGATTTTTGGCTACGTTTTAGTCC
AGATGGTGGTGCCCCTGCGGCATCTCGCGACTGAATTCCCCGTGGAGTGG
AGTCGCGACGGACAAGAGTTCTCGTGGAGGGGCGGCGGCGGCACCGGGGG
GAGGGCGGGCAGCGGAGGGCTGGTTACGGAGGAGGCGCTGGTGAGGATTG
TGCACCGTTCGCGAGGGGCAGGGAGAAGAGAAGGGACGGCTGCCGCAGCG
GCGGTGGCGGGGGATGTGCAAACTGTACATTTGTACGGGGCGCCACTTAC
TGCGCAGCAGCGGCTGCCGCAGCGGCGGTGGCGGGGGATGTGCAAACTGT
ACATTTGTACGGGGCGCCACTTACTGCGCAGCAGGTGCTACGCTTGGTGC
TGGACCCCGACATGCTGCGGCAGCTCGCCAGGCGGACAGCGGAAAGCATC
ACCACATCTACCAAATCTCCAAAGCAAGCCGACAACGACAAGGCAAAGGA
GAACGGCAACAATATGGGGCCGAAAATTATTCGCACCCCGCCCTACTCTC
ACGTAGACGCTTGGAAATCGATCAACCGTAGGCCCTTTTCTCCCTGGATA
GATCCCACCGTGGATGTGTGGGACGCCAGGTTCGGCGGGGATGGCCCTGC
GCCCGGCGATTGGTTGGAATCTCCGCCCTCGGATGACGAGCTGGGCAGAG
CTGCGTCGACCATCGAGGTGTGTTTGGTTGTGTTATATTATGTGTTGTTT
GTATTGTAAGTGCTACGCTTGGTGCTGGACCCCGACATGCTGCGGCAGCT
CGCCAGGCGGACAGCGGAAAGCATCACCACATCTACCAAATCTCCAAAGC
AAGCCGACAACGACAAGGCAAAGGAGAACGGCAACAATATGGGGCCGAAA
ATTATTCGCACCCCGCCCTACTCTCACGTAGACGCTTGGAAATCGATCAA
CCGTAGGCCCTTTTCTCCCTGGATAGATCCCACCGTGGATGTGTGGGACG
CCAGGTTCGGCGGGGATGGCCCTGCGCCCGGCGATTGGTTGGAATCTCCG
CCCTCGGATGACGAGCTGGGCAGAGCTGCGTCGACCATCGAGGTGTGTTT
GGTTGTGTTATATTATGTGTTGTTTGTATTGTAA
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