mRNA_H-paniculata_contig21092.5510.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21092.5510.1
Unique NamemRNA_H-paniculata_contig21092.5510.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21092.5510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21092contigH-paniculata_contig21092:2761..3536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size776
Cds size513
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929559.1087854-UTR-H-paniculata_contig21092:2760..27941622929559.1087854-UTR-H-paniculata_contig21092:2760..2794Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21092 2761..2794 +
1691480913.4452908-UTR-H-paniculata_contig21092:2760..27941691480913.4452908-UTR-H-paniculata_contig21092:2760..2794Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21092 2761..2794 +
1622929559.1329668-UTR-H-paniculata_contig21092:3307..35361622929559.1329668-UTR-H-paniculata_contig21092:3307..3536Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21092 3308..3536 +
1691480913.4656558-UTR-H-paniculata_contig21092:3307..35361691480913.4656558-UTR-H-paniculata_contig21092:3307..3536Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21092 3308..3536 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929559.1215994-CDS-H-paniculata_contig21092:2794..33071622929559.1215994-CDS-H-paniculata_contig21092:2794..3307Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21092 2795..3307 +
1691480913.4560785-CDS-H-paniculata_contig21092:2794..33071691480913.4560785-CDS-H-paniculata_contig21092:2794..3307Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21092 2795..3307 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21092.5510.1prot_H-paniculata_contig21092.5510.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21092 2795..3307 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21092.5510.1

>prot_H-paniculata_contig21092.5510.1 ID=prot_H-paniculata_contig21092.5510.1|Name=mRNA_H-paniculata_contig21092.5510.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=171bp
MTRRVAAGEREGEIVMVETGGMGKGMATVAVMDMGMAGRAMEVGRTGGGT
GKVVVAGEVVVVRTVIGAAGVTARERGRGGTGVARVAIETETGTETETGR
GIEIGIGIEIGMATGRGIGGTEEHADAMIEGMTGAGEEDIVRPMTVQWSR
DYGIRFRKYLPFSPPPPPAG*
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mRNA from alignment at H-paniculata_contig21092:2761..3536+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21092.5510.1 ID=mRNA_H-paniculata_contig21092.5510.1|Name=mRNA_H-paniculata_contig21092.5510.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=776bp|location=Sequence derived from alignment at H-paniculata_contig21092:2761..3536+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGACGAGGGAGTAGGGATAAGGACGGGGGAAGTAATGACAAGGAGAGTGG
CAGCAGGCGAGAGGGAGGGGGAGATCGTGATGGTGGAGACAGGAGGCATG
GGAAAAGGCATGGCGACGGTAGCGGTAATGGACATGGGCATGGCGGGAAG
AGCAATGGAAGTTGGACGGACAGGAGGGGGGACAGGGAAGGTGGTGGTAG
CCGGGGAGGTGGTGGTGGTGAGGACCGTGATCGGAGCAGCAGGGGTGACC
GCGAGAGAGAGAGGTCGAGGAGGGACAGGAGTAGCAAGGGTGGCGATCGA
GACAGAGACAGGGACAGAGACAGAGACCGGGAGAGGAATAGAGATAGGGA
TAGGGATAGAGATAGGGATGGCGACCGGGAGAGGGATAGGGGGGACAGAA
GAGCACGCGGACGCGATGATCGAAGGGATGACAGGCGCAGGTGAGGAGGA
TATAGTTCGTCCCATGACCGTTCAATGGTCGAGAGACTACGGCATTCGTT
TTCGTAAGTATCTTCCCTTCTCCCCTCCCCCACCTCCCGCCGGCTAGGTA
GATGGGTAGGTGGGTACTTTTTGGGAAATGGATGGCTGCTGAGTATCAAG
TGGCGGTGGTAGTAGGATGCCGCGGCGGGGGGTGGGGGGGGCGTACTCAC
GTCTTGCATGCCGTAGTTGGTAGATCATTGGTCACGTGTGTTTGGAAGGA
CCAACTTTTGTTTCTGTCAGAGCGATTTCCGATGGTCCATCGCTCTTTTT
CGCTTGGATTGCCAGGAAGGGGGAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig21092:2761..3536+

>mRNA_H-paniculata_contig21092.5510.1 ID=mRNA_H-paniculata_contig21092.5510.1|Name=mRNA_H-paniculata_contig21092.5510.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1026bp|location=Sequence derived from alignment at H-paniculata_contig21092:2761..3536+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACAAGGAGAGTGGCAGCAGGCGAGAGGGAGGGGGAGATCGTGATGGT
GGAGACAGGAGGCATGGGAAAAGGCATGGCGACGGTAGCGGTAATGGACA
TGGGCATGGCGGGAAGAGCAATGGAAGTTGGACGGACAGGAGGGGGGACA
GGGAAGGTGGTGGTAGCCGGGGAGGTGGTGGTGGTGAGGACCGTGATCGG
AGCAGCAGGGGTGACCGCGAGAGAGAGAGGTCGAGGAGGGACAGGAGTAG
CAAGGGTGGCGATCGAGACAGAGACAGGGACAGAGACAGAGACCGGGAGA
GGAATAGAGATAGGGATAGGGATAGAGATAGGGATGGCGACCGGGAGAGG
GATAGGGGGGACAGAAGAGCACGCGGACGCGATGATCGAAGGGATGACAG
GCGCAGGTGAGGAGGATATAGTTCGTCCCATGACCGTTCAATGGTCGAGA
GACTACGGCATTCGTTTTCGTAAGTATCTTCCCTTCTCCCCTCCCCCACC
TCCCGCCGGCTAGATGACAAGGAGAGTGGCAGCAGGCGAGAGGGAGGGGG
AGATCGTGATGGTGGAGACAGGAGGCATGGGAAAAGGCATGGCGACGGTA
GCGGTAATGGACATGGGCATGGCGGGAAGAGCAATGGAAGTTGGACGGAC
AGGAGGGGGGACAGGGAAGGTGGTGGTAGCCGGGGAGGTGGTGGTGGTGA
GGACCGTGATCGGAGCAGCAGGGGTGACCGCGAGAGAGAGAGGTCGAGGA
GGGACAGGAGTAGCAAGGGTGGCGATCGAGACAGAGACAGGGACAGAGAC
AGAGACCGGGAGAGGAATAGAGATAGGGATAGGGATAGAGATAGGGATGG
CGACCGGGAGAGGGATAGGGGGGACAGAAGAGCACGCGGACGCGATGATC
GAAGGGATGACAGGCGCAGGTGAGGAGGATATAGTTCGTCCCATGACCGT
TCAATGGTCGAGAGACTACGGCATTCGTTTTCGTAAGTATCTTCCCTTCT
CCCCTCCCCCACCTCCCGCCGGCTAG
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