mRNA_H-paniculata_contig2108.5509.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2108.5509.1
Unique NamemRNA_H-paniculata_contig2108.5509.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2108.5509.1 vs. uniprot
Match: D7FIU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU6_ECTSI)

HSP 1 Score: 413 bits (1062), Expect = 3.850e-145
Identity = 207/234 (88.46%), Postives = 222/234 (94.87%), Query Frame = 1
Query:    1 RYVVSCQVFSKMDKSKKKADKDKAEYIKMLAKNYPGLRIAYVEEVKGHFYSVLTRH--NGTE-MEEEYRVRLPGQILVGEGKPNNQNHAIIFTRGEAIQAIDMNQDASLEDAIKVRQVMEEFKFAEGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDVFDRMSAITIGGISKSCKGIHLSEDIFAGFNYVLRGGEATQADYIQVM 693
            RYVVSCQVF KM KSKKKAD DKA +IKMLA+ YPGLRIA+V+E  G FYSVL+++  NGT+ MEEEYRVRLPGQILVGEGKPNNQNHA+IFTRGEAIQAIDMNQDA+LEDAIK+RQVMEEF FAEGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPD+FDRMSAIT+GG+SK+CKGIHLSEDIFAGFNYVLRGGEATQADYIQVM
Sbjct:    3 RYVVSCQVFGKMQKSKKKADLDKAAHIKMLARIYPGLRIAHVDEKYGEFYSVLSKNAGNGTDDMEEEYRVRLPGQILVGEGKPNNQNHAVIFTRGEAIQAIDMNQDAALEDAIKIRQVMEEFNFAEGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDIFDRMSAITMGGVSKACKGIHLSEDIFAGFNYVLRGGEATQADYIQVM 236          
BLAST of mRNA_H-paniculata_contig2108.5509.1 vs. uniprot
Match: D7FXN7_ECTSI (1,3-beta-glucan synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN7_ECTSI)

HSP 1 Score: 288 bits (736), Expect = 7.050e-86
Identity = 147/232 (63.36%), Postives = 187/232 (80.60%), Query Frame = 1
Query:    4 YVVSCQVFSKMDKSKKKADKDKAEYIKMLAKNYPGLRIAYVEEVK-GHFYSVLTRHNG--TEMEEEYRVRLPGQILVGEGKPNNQNHAIIFTRGEAIQAIDMNQDASLEDAIKVRQVMEEFKFAEGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDVFDRMSAITIGGISKSCKGIHLSEDIFAGFNYVLRGGEATQADYIQV 690
            YVVSCQ  +K+ +S K  D+ KA+ +++L + +P L++AYVE  K G  +SVL R++   + + ++Y V LPG IL+GEGKPNNQNHAIIFTRGEA+QAIDMNQD SLEDA+K RQ++ EF F  GG     N  RIVGFRE VFTHDVS++ANFFSLQEL+FV++ QR LD PL VRFHYGHPD+FD++SA+T+GGISK+ KGI+LSEDIF GFN++LRGG+ATQA+YIQV
Sbjct: 1210 YVVSCQQHAKLLRSGKDEDRAKAKSVELLMEMHPSLKVAYVESGKDGRHHSVLIRYDEARSRIVKQYEVELPGPILLGEGKPNNQNHAIIFTRGEAVQAIDMNQDGSLEDALKARQLLGEFDFNGGG-----NHARIVGFREFVFTHDVSSIANFFSLQELSFVTSIQRFLDKPLAVRFHYGHPDLFDKVSAMTLGGISKASKGINLSEDIFGGFNFILRGGKATQAEYIQV 1436          
BLAST of mRNA_H-paniculata_contig2108.5509.1 vs. uniprot
Match: A0A835ZD62_9STRA (1,3-beta-glucan synthase component-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD62_9STRA)

HSP 1 Score: 258 bits (658), Expect = 1.370e-78
Identity = 129/176 (73.30%), Postives = 147/176 (83.52%), Query Frame = 1
Query:  181 MEEEYRVRLPGQILVGEGKPNNQNHAIIFTRGEAIQAIDMNQDASLEDAIKVRQVMEEFKFAE------GGTGR-GRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDVFDRMSAITIGGISKSCKGIHLSEDIFAGFNYVLRGGEATQADYIQ 687
            M EEYRV LPGQILVGEGKPNNQNHAIIFTRGEAIQAIDMNQD SLE+A+K R++++EF F E      GG  R   N+GRIVGFREHVFTH+VS++ANFFSLQE  FV+ATQR LD PL +RFHYGHPDVFD+ +AIT GGIS+  KGIHLSEDIFAGF +VLRGG ++Q DYIQ
Sbjct:    1 MLEEYRVELPGQILVGEGKPNNQNHAIIFTRGEAIQAIDMNQDGSLEEALKQREMLQEFGFGERRIGLLGGRSREAPNLGRIVGFREHVFTHNVSSIANFFSLQETGFVTATQRVLDEPLAIRFHYGHPDVFDKTTAITQGGISRPSKGIHLSEDIFAGFYWVLRGGRSSQLDYIQ 176          
BLAST of mRNA_H-paniculata_contig2108.5509.1 vs. uniprot
Match: A0A6H5L5X7_9PHAE (GT48 protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5X7_9PHAE)

HSP 1 Score: 257 bits (656), Expect = 6.920e-77
Identity = 133/214 (62.15%), Postives = 169/214 (78.97%), Query Frame = 1
Query:    4 YVVSCQVFSKMDKSKKKADKDKAEYIKMLAKNYPGLRIAYVEEVK-GHFYSVLTRHNG--TEMEEEYRVRLPGQILVGEGKPNNQNHAIIFTRGEAIQAIDMNQDASLEDAIKVRQVMEEFKFAEGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDVFDRMSAITIGGISKSCKGIHLSEDIFAG 636
            YVVSCQ  +K+ +S K  D+ KA+ +++L + +P L++AYVE  K G  +SVL R++   + + ++Y V LPG IL+GEGKPNNQNHAIIFTRGEA+QAIDMNQD SLEDA+K RQ++ EF F  GG     N  RIVGFRE VFTHDVS++ANFFSLQEL+FV++ QR LD PL VRFHYGHPD+FD++SA+T+GGISK+ KGI+LSEDIF G
Sbjct:  636 YVVSCQQHAKLLRSGKDEDRAKAKSVELLMEMHPSLKVAYVESGKDGRHHSVLIRYDEARSRIVKQYEVELPGPILLGEGKPNNQNHAIIFTRGEAVQAIDMNQDGSLEDALKARQLLGEFDFNGGG-----NHARIVGFREFVFTHDVSSIANFFSLQELSFVTSIQRFLDKPLAVRFHYGHPDLFDKVSAMTLGGISKASKGINLSEDIFGG 844          
BLAST of mRNA_H-paniculata_contig2108.5509.1 vs. uniprot
Match: A0A836C8X3_9STRA (1,3-beta-glucan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8X3_9STRA)

HSP 1 Score: 261 bits (668), Expect = 9.560e-77
Identity = 139/240 (57.92%), Postives = 174/240 (72.50%), Query Frame = 1
Query:    1 RYVVSCQVFSKMDKSKKKADKDKAEYIKMLAKNYPGLRIAYVEEVKG--------HFYSVLTRHNGTEMEEEYRVRLPGQILVGEGKPNNQNHAIIFTRGEAIQAIDMNQDASLEDAIKVRQVMEEFKFAEGGTGRGR---NIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDVFDRMSAITIGGISKSCKGIHLSEDIFAGFNYVLRGGEATQADYIQ 687
            RYVVSCQ+   M   K K    +A YI  LA+N+PGL IAYV EVK           YSVL R +G  ++EE+R++LPG ILVGEGKPNNQN A++FTRG+A+QAIDMNQD  LE+A K R+++  F+F  GG  RG    N G IVGFREH+FTH  SAVA +FSLQE  FV+ATQR LD+PL +RFHYGHPD+FD+++AIT GG S+    +HLSEDI AG+ +VLRGG++ Q D+IQ
Sbjct: 1094 RYVVSCQILPAMRLKKAK----EAVYIDWLAQNHPGLCIAYVLEVKEDTGGEKTHEHYSVLARWSGDSLKEEHRIQLPGTILVGEGKPNNQNQAMVFTRGDAVQAIDMNQDLGLEEAFKQREMLANFRF--GGHARGERAHNAGLIVGFREHIFTHAASAVAMYFSLQESGFVTATQRVLDDPLGIRFHYGHPDLFDKITAITQGGNSRPSTKLHLSEDILAGYVWVLRGGDSIQLDFIQ 1327          
BLAST of mRNA_H-paniculata_contig2108.5509.1 vs. uniprot
Match: A0A453DH39_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453DH39_AEGTS)

HSP 1 Score: 231 bits (590), Expect = 7.530e-71
Identity = 132/242 (54.55%), Postives = 168/242 (69.42%), Query Frame = 1
Query:    4 YVVSCQVFSKMDKSKKKADKDKAEYIKML--AKNYPGLRIAYVEEVKGH---------FYSVLTRHNGTEMEEE-YRVRLPGQIL-VGEGKPNNQNHAIIFTRGEAIQAIDMNQDASLEDAIKVRQVMEEFKFAEGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDVFDRMSAITIGGISKSCKGIHLSEDIFAGFNYVLRGGEATQADYIQV 690
            YVVSCQV+  M K  K A K+KA Y+ +L     YP LRIAY++EV+           +YSVL +  G + +EE YR++LPG+   +GEGKP NQNHAIIFTRGEA+Q IDMNQD  LE+A K+R V+EEF+     T  G++   I+G REH+FT  VS++A F S QE +FV+  QR L NPL VRFHYGHPD+FDR+  IT GGISK+ K I+LSEDIF+GFN  +RGG  T  +Y+QV
Sbjct:  146 YVVSCQVYG-MQKVSKDA-KEKARYLNILNLMMMYPSLRIAYIDEVEAPNKDGMTEKTYYSVLVKGVGDKYDEEIYRIKLPGKPTNIGEGKPENQNHAIIFTRGEALQVIDMNQDNYLEEAFKMRNVLEEFE----STKYGKSKPTILGLREHIFTGSVSSLAWFMSNQETSFVTIGQRVLANPLKVRFHYGHPDIFDRLFHITRGGISKASKTINLSEDIFSGFNSTMRGGNITHHEYMQV 381          
BLAST of mRNA_H-paniculata_contig2108.5509.1 vs. uniprot
Match: A0A453DH34_AEGTS (Uncharacterized protein n=4 Tax=Triticinae TaxID=1648030 RepID=A0A453DH34_AEGTS)

HSP 1 Score: 231 bits (590), Expect = 2.390e-67
Identity = 132/242 (54.55%), Postives = 168/242 (69.42%), Query Frame = 1
Query:    4 YVVSCQVFSKMDKSKKKADKDKAEYIKML--AKNYPGLRIAYVEEVKGH---------FYSVLTRHNGTEMEEE-YRVRLPGQIL-VGEGKPNNQNHAIIFTRGEAIQAIDMNQDASLEDAIKVRQVMEEFKFAEGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDVFDRMSAITIGGISKSCKGIHLSEDIFAGFNYVLRGGEATQADYIQV 690
            YVVSCQV+  M K  K A K+KA Y+ +L     YP LRIAY++EV+           +YSVL +  G + +EE YR++LPG+   +GEGKP NQNHAIIFTRGEA+Q IDMNQD  LE+A K+R V+EEF+     T  G++   I+G REH+FT  VS++A F S QE +FV+  QR L NPL VRFHYGHPD+FDR+  IT GGISK+ K I+LSEDIF+GFN  +RGG  T  +Y+QV
Sbjct:  140 YVVSCQVYG-MQKVSKDA-KEKARYLNILNLMMMYPSLRIAYIDEVEAPNKDGMTEKTYYSVLVKGVGDKYDEEIYRIKLPGKPTNIGEGKPENQNHAIIFTRGEALQVIDMNQDNYLEEAFKMRNVLEEFE----STKYGKSKPTILGLREHIFTGSVSSLAWFMSNQETSFVTIGQRVLANPLKVRFHYGHPDIFDRLFHITRGGISKASKTINLSEDIFSGFNSTMRGGNITHHEYMQV 375          
BLAST of mRNA_H-paniculata_contig2108.5509.1 vs. uniprot
Match: A0A7S3U6Q4_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3U6Q4_9SPIT)

HSP 1 Score: 233 bits (593), Expect = 3.670e-67
Identity = 123/252 (48.81%), Postives = 170/252 (67.46%), Query Frame = 1
Query:    4 YVVSCQVFS--KMDKSKKKADKDKAEYIKMLAKNYPGLRIAYVEEVKG-----------------HFYSVL---TRHNGTE-MEEEYRVRLPGQILVGEGKPNNQNHAIIFTRGEAIQAIDMNQDASLEDAIKVRQVMEEFKFAEGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDVFDRMSAITIGGISKSCKGIHLSEDIFAGFNYVLRGGEATQADYIQV 690
            YVVSCQ++   K ++  K AD +       L + +P LR+AYV++                     FYSVL   ++  G E +++ YRV+LPG +++GEGKP NQNHA+IFTRGEA+QAIDMNQ   LE+A+K+R ++ EF+   G T        IVGFREH+FT  +S++A++ +LQE  FV+ TQR L NPLH+R HYGHPDVFD++ A+T GG+SK+ KGIHLSED++AGFN+ LRGG+   A+Y+QV
Sbjct:  313 YVVSCQMYGTHKRNRDPKAADTE------FLLQRFPNLRVAYVDKTSTLSKIPYPDGTSALRETIRFYSVLIKGSKEGGEEAVQQVYRVQLPGDMMLGEGKPENQNHAVIFTRGEALQAIDMNQCGYLEEALKMRNLLGEFRKTPGAT--------IVGFREHIFTGQLSSLASYMALQEGTFVTLTQRVLSNPLHIRQHYGHPDVFDKIFALTTGGVSKASKGIHLSEDVYAGFNHTLRGGKVPYAEYVQV 550          
BLAST of mRNA_H-paniculata_contig2108.5509.1 vs. uniprot
Match: A0A8J2T241_9STRA (1,3-beta-glucan synthase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T241_9STRA)

HSP 1 Score: 232 bits (592), Expect = 1.570e-66
Identity = 121/238 (50.84%), Postives = 165/238 (69.33%), Query Frame = 1
Query:    4 YVVSCQVFSKMDKSKKKADKD-KAEYIKMLAKNYPGLRIAYVEEVKGH------FYSVLTRHNGTE--MEEEYRVRLPGQILVGEGKPNNQNHAIIFTRGEAIQAIDMNQDASLEDAIKVRQVMEEFKFAEGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDVFDRMSAITIGGISKSCKGIHLSEDIFAGFNYVLRGGEATQADYIQV 690
            YVV+CQ++ +       A +D KA+ I+ML K +P LR+AY++E + +      FYS L +H+ T     E YRVRLPG  +VGEGKP NQNHA++FTRGE +Q IDMNQD   E+A+K R +++EF+   G    G     IVGFREH+FT  VS++AN+ +LQEL+FV+  QR L +PLH+R HYGHPD+FD++   T GG+SK+ +GI+LSEDIFAG+  V+RGG  T  +Y QV
Sbjct: 1480 YVVTCQIYGRQS-----AQQDPKAKDIEMLLKRFPLLRVAYIDEQRVNRSGASAFYSCLVKHDATTDGPAEVYRVRLPGNAIVGEGKPENQNHAVVFTRGETLQTIDMNQDGFFEEALKTRNLVQEFR---GPRAPGAPPVVIVGFREHIFTGSVSSLANYMALQELSFVTLGQRVLADPLHMRLHYGHPDIFDKLWFTTRGGVSKASRGINLSEDIFAGYTAVIRGGGVTMREYAQV 1709          
BLAST of mRNA_H-paniculata_contig2108.5509.1 vs. uniprot
Match: A0A087GZ47_ARAAL (Uncharacterized protein n=2 Tax=Arabis alpina TaxID=50452 RepID=A0A087GZ47_ARAAL)

HSP 1 Score: 221 bits (564), Expect = 1.600e-66
Identity = 126/238 (52.94%), Postives = 152/238 (63.87%), Query Frame = 1
Query:    4 YVVSCQVFSKMDKSKKKADKDKAEYIKMLAKNYPGLRIAYVEEVKGH--------FYSVLTRHNGTEMEEEYRVRLPGQIL-VGEGKPNNQNHAIIFTRGEAIQAIDMNQDASLEDAIKVRQVMEEFKFAEGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDVFDRMSAITIGGISKSCKGIHLSEDIFAGFNYVLRGGEATQADYIQV 690
            YVVSCQV+    KS    ++     I  L   YP LR+AYV+E +          FYSVL +      EE YR++LPG    +GEGKP NQNHAIIFTRGEA+Q IDMNQD   E+A K+R V+EEF     G    R    I+G REH+FT  VS++A F S QE +FV+  QR L NPL VRFHYGHPD+FDR+  IT GG+SK+ K I+LSEDIF GFN  LRGG  T  +YIQV
Sbjct:  207 YVVSCQVYGTQKKSGDIHNRSCYTNILQLMLKYPSLRVAYVDEREETADAKSPKVFYSVLLKGGNKFDEEIYRIKLPGPPAEIGEGKPENQNHAIIFTRGEALQTIDMNQDNYFEEAFKIRNVLEEFNKERAG----RRKPTILGLREHIFTGSVSSLAWFMSNQESSFVTIGQRILANPLRVRFHYGHPDIFDRIFHITRGGVSKASKVINLSEDIFGGFNSTLRGGYVTHHEYIQV 440          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2108.5509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIU6_ECTSI3.850e-14588.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FXN7_ECTSI7.050e-8663.361,3-beta-glucan synthase n=1 Tax=Ectocarpus silicu... [more]
A0A835ZD62_9STRA1.370e-7873.301,3-beta-glucan synthase component-domain-containi... [more]
A0A6H5L5X7_9PHAE6.920e-7762.15GT48 protein (Fragment) n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C8X3_9STRA9.560e-7757.921,3-beta-glucan synthase n=1 Tax=Tribonema minus T... [more]
A0A453DH39_AEGTS7.530e-7154.55Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]
A0A453DH34_AEGTS2.390e-6754.55Uncharacterized protein n=4 Tax=Triticinae TaxID=1... [more]
A0A7S3U6Q4_9SPIT3.670e-6748.81Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
A0A8J2T241_9STRA1.570e-6650.841,3-beta-glucan synthase n=1 Tax=Pelagomonas calce... [more]
A0A087GZ47_ARAAL1.600e-6652.94Uncharacterized protein n=2 Tax=Arabis alpina TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2108contigH-paniculata_contig2108:2644..4662 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score415.2
Seed ortholog evalue2e-113
Seed eggNOG ortholog2880.D7FIU6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.1,3-beta-D-glucan synthase activity
EggNOG OGsKOG0916@1,KOG0916@2759
Ec32 ortholog descriptionGlycosyl transferase, family 48
Ec32 orthologEc-00_000820.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size693
Cds size693
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2108.5509.1prot_H-paniculata_contig2108.5509.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2108 2644..4662 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929559.0181575-CDS-H-paniculata_contig2108:2643..28141622929559.0181575-CDS-H-paniculata_contig2108:2643..2814Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2108 2644..2814 -
1691480913.4059718-CDS-H-paniculata_contig2108:2643..28141691480913.4059718-CDS-H-paniculata_contig2108:2643..2814Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2108 2644..2814 -
1622929559.035927-CDS-H-paniculata_contig2108:3254..34341622929559.035927-CDS-H-paniculata_contig2108:3254..3434Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2108 3255..3434 -
1691480913.4156837-CDS-H-paniculata_contig2108:3254..34341691480913.4156837-CDS-H-paniculata_contig2108:3254..3434Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2108 3255..3434 -
1622929559.048848-CDS-H-paniculata_contig2108:3849..39871622929559.048848-CDS-H-paniculata_contig2108:3849..3987Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2108 3850..3987 -
1691480913.4255474-CDS-H-paniculata_contig2108:3849..39871691480913.4255474-CDS-H-paniculata_contig2108:3849..3987Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2108 3850..3987 -
1622929559.0648456-CDS-H-paniculata_contig2108:4458..46621622929559.0648456-CDS-H-paniculata_contig2108:4458..4662Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2108 4459..4662 -
1691480913.4356387-CDS-H-paniculata_contig2108:4458..46621691480913.4356387-CDS-H-paniculata_contig2108:4458..4662Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2108 4459..4662 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2108.5509.1

>prot_H-paniculata_contig2108.5509.1 ID=prot_H-paniculata_contig2108.5509.1|Name=mRNA_H-paniculata_contig2108.5509.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=231bp
RYVVSCQVFSKMDKSKKKADKDKAEYIKMLAKNYPGLRIAYVEEVKGHFY
SVLTRHNGTEMEEEYRVRLPGQILVGEGKPNNQNHAIIFTRGEAIQAIDM
NQDASLEDAIKVRQVMEEFKFAEGGTGRGRNIGRIVGFREHVFTHDVSAV
ANFFSLQELNFVSATQRALDNPLHVRFHYGHPDVFDRMSAITIGGISKSC
KGIHLSEDIFAGFNYVLRGGEATQADYIQVM
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mRNA from alignment at H-paniculata_contig2108:2644..4662-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2108.5509.1 ID=mRNA_H-paniculata_contig2108.5509.1|Name=mRNA_H-paniculata_contig2108.5509.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2019bp|location=Sequence derived from alignment at H-paniculata_contig2108:2644..4662- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTATGTGGTGTCCTGCCAGGTGTTCAGCAAGATGGACAAATCAAAGAA AAAGGCGGACAAGGACAAGGCGGAATACATCAAAATGCTGGCCAAAAATT ACCCCGGGCTCCGCATCGCCTACGTGGAGGAGGTAAAGGGACACTTCTAC TCCGTGCTGACCAGACACAACGGAACCGAAATGGAAGAGGAGTACCGTGT CAGGGTGAGTTCGCTCTTGACAATGTCGTAGTGCTGCTCTAGAGAGAGTT GCAAGCACGTCTCGAAAGTCGAGCGTTTGGTGCGGGAAGAGGGTAGGTTC TGTTAGTCCTGTTTGGAAAAGACGAGAGTTCATGTATCCTCCCCTGTGGT TGAAGATGTCCACCGAATTGTTTTCCGTCGGAAAACCCTGAACAAGTTTG TAACATCGTGTCCACACAGTCTCAACATAATGCCCTGATTAATTCCACGG AAAGTACCTTCACGTACCAGTATTTGATCTTTCATGTAGACATATCTGTT GTCCTTTACATGGTGGAGGTCACTGCGGGAGGTGGGTAGGGTTTGAATCG CCGTAAGGCAGGGAGCACGTTCGCTTTTCCGAATACTTGGGTCCTCTTGG GTCCTTTTTAACCGTAAGGCTTTTGATAATTGCACCGTGTTTTCCGTTCA ACGTGTTCGTTCCGTTGTGTTACAGCTTCCTGGGCAAATCTTGGTGGGAG AGGGCAAGCCCAATAACCAGAACCACGCTATCATCTTCACTCGTGGTGAG GCCATCCAGGCGATCGACATGAACCAGGACGCTTCGCTTGAAGACGCCAT CAAAGTCCGACAGGTGCGCACTGGATTATGACAAAGCAGCGGAGGCACGC TTGTTTCTGTGGGGCGGCAAGACATGTTGGAGACGCAGGTTGTTGTCGCA GATTTTGACTCAAGTTTCTGTGTCGTGTTTTACAAGTGTCTTTCAATTAC GGTGGCGAAGACGGCGACAGCGCTGCTAGTGGTAAGCATTTTCTTGGCGA ACGATTTTTCTGTTTGTTTTTTCTTGTCTCGACTTCGAAGGGTAAGCAGC CCTTGAGTCCCATCCGTTAATTCACGCTCCGTCATCAGAGCGTGTCGTAG CGTACCTTCCGACTGCATGTCACCTACTGTAGTACAAACTAGATGCTGCT ATAAAACAACCACCGAAACAGTCGCATCATCAGTAACATCCTGTTTTTAT TCTCCAATTGGTTGCTATCTCGGTGAAGGTAATGGAGGAGTTCAAGTTCG CCGAGGGGGGCACCGGCCGCGGGCGCAACATCGGGCGCATTGTGGGGTTC CGGGAGCACGTGTTCACGCATGACGTTTCCGCGGTCGCTAACTTCTTCAG TTTGCAGGAGCTCAACTTCGTGTCGGCCACTCAGCGCGCCCTCGACAACC CGCTGCACGTGAGAATCATCAATATATGCTACGGTAGCTCTGCTCATAGG AGGGTTAGATTAAATTGCGTGCGTGGTGGCTTTGTGAGCTGTTCTCTAAT CCCCTATTGATCATTATCTAATTTTGCTGATAAGTGTGTGAAGTACAGAT TTATTGTTCAACTTACTACCTTCAGCTTTTAGAACATGTGTAAGTCAGCG GAATAGCTTGGTGGTTTCTCGTTTCTCCTTGCTTGTCGTAGATTGTTGGT GCAGTACTCTATTTACACTTGATATTATTTGAAAGCTGTTCCTAAAACGC CGACCTTAAATCCAAGTAACTCATCGCTGTCGGGGATCATCAATCTTGGC CGATGTATGGAGAATAACCACTAAACGCGCAGAGCTAATTGACCCCATCA ATGCCACGCCGTGACGGTTACGAACGTCTTGTTTATAATTTGGAACAGGT TCGGTTCCACTACGGGCACCCGGACGTCTTTGACCGCATGAGCGCCATCA CAATTGGCGGGATTTCCAAGTCTTGCAAGGGCATTCATCTATCTGAGGAT ATCTTTGCAGGATTCAACTACGTGCTCCGCGGTGGGGAAGCAACGCAGGC CGATTACATCCAGGTGATG
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Coding sequence (CDS) from alignment at H-paniculata_contig2108:2644..4662-

>mRNA_H-paniculata_contig2108.5509.1 ID=mRNA_H-paniculata_contig2108.5509.1|Name=mRNA_H-paniculata_contig2108.5509.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1386bp|location=Sequence derived from alignment at H-paniculata_contig2108:2644..4662- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTATGTGGTGTCCTGCCAGGTGTTCAGCAAGATGGACAAATCAAAGAA
AAAGGCGGACAAGGACAAGGCGGAATACATCAAAATGCTGGCCAAAAATT
ACCCCGGGCTCCGCATCGCCTACGTGGAGGAGGTAAAGGGACACTTCTAC
TCCGTGCTGACCAGACACAACGGAACCGAAATGGAAGAGGAGTACCGTGT
CAGGAGGTATGTGGTGTCCTGCCAGGTGTTCAGCAAGATGGACAAATCAA
AGAAAAAGGCGGACAAGGACAAGGCGGAATACATCAAAATGCTGGCCAAA
AATTACCCCGGGCTCCGCATCGCCTACGTGGAGGAGGTAAAGGGACACTT
CTACTCCGTGCTGACCAGACACAACGGAACCGAAATGGAAGAGGAGTACC
GTGTCAGGCTTCCTGGGCAAATCTTGGTGGGAGAGGGCAAGCCCAATAAC
CAGAACCACGCTATCATCTTCACTCGTGGTGAGGCCATCCAGGCGATCGA
CATGAACCAGGACGCTTCGCTTGAAGACGCCATCAAAGTCCGACAGCTTC
CTGGGCAAATCTTGGTGGGAGAGGGCAAGCCCAATAACCAGAACCACGCT
ATCATCTTCACTCGTGGTGAGGCCATCCAGGCGATCGACATGAACCAGGA
CGCTTCGCTTGAAGACGCCATCAAAGTCCGACAGGTAATGGAGGAGTTCA
AGTTCGCCGAGGGGGGCACCGGCCGCGGGCGCAACATCGGGCGCATTGTG
GGGTTCCGGGAGCACGTGTTCACGCATGACGTTTCCGCGGTCGCTAACTT
CTTCAGTTTGCAGGAGCTCAACTTCGTGTCGGCCACTCAGCGCGCCCTCG
ACAACCCGCTGCACGTAATGGAGGAGTTCAAGTTCGCCGAGGGGGGCACC
GGCCGCGGGCGCAACATCGGGCGCATTGTGGGGTTCCGGGAGCACGTGTT
CACGCATGACGTTTCCGCGGTCGCTAACTTCTTCAGTTTGCAGGAGCTCA
ACTTCGTGTCGGCCACTCAGCGCGCCCTCGACAACCCGCTGCACGTTCGG
TTCCACTACGGGCACCCGGACGTCTTTGACCGCATGAGCGCCATCACAAT
TGGCGGGATTTCCAAGTCTTGCAAGGGCATTCATCTATCTGAGGATATCT
TTGCAGGATTCAACTACGTGCTCCGCGGTGGGGAAGCAACGCAGGCCGAT
TACATCCAGGTGATGGTTCGGTTCCACTACGGGCACCCGGACGTCTTTGA
CCGCATGAGCGCCATCACAATTGGCGGGATTTCCAAGTCTTGCAAGGGCA
TTCATCTATCTGAGGATATCTTTGCAGGATTCAACTACGTGCTCCGCGGT
GGGGAAGCAACGCAGGCCGATTACATCCAGGTGATG
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