mRNA_H-paniculata_contig2108.5509.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2108.5509.1 vs. uniprot
Match: D7FIU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU6_ECTSI) HSP 1 Score: 413 bits (1062), Expect = 3.850e-145 Identity = 207/234 (88.46%), Postives = 222/234 (94.87%), Query Frame = 1
Query: 1 RYVVSCQVFSKMDKSKKKADKDKAEYIKMLAKNYPGLRIAYVEEVKGHFYSVLTRH--NGTE-MEEEYRVRLPGQILVGEGKPNNQNHAIIFTRGEAIQAIDMNQDASLEDAIKVRQVMEEFKFAEGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDVFDRMSAITIGGISKSCKGIHLSEDIFAGFNYVLRGGEATQADYIQVM 693
RYVVSCQVF KM KSKKKAD DKA +IKMLA+ YPGLRIA+V+E G FYSVL+++ NGT+ MEEEYRVRLPGQILVGEGKPNNQNHA+IFTRGEAIQAIDMNQDA+LEDAIK+RQVMEEF FAEGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPD+FDRMSAIT+GG+SK+CKGIHLSEDIFAGFNYVLRGGEATQADYIQVM
Sbjct: 3 RYVVSCQVFGKMQKSKKKADLDKAAHIKMLARIYPGLRIAHVDEKYGEFYSVLSKNAGNGTDDMEEEYRVRLPGQILVGEGKPNNQNHAVIFTRGEAIQAIDMNQDAALEDAIKIRQVMEEFNFAEGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDIFDRMSAITMGGVSKACKGIHLSEDIFAGFNYVLRGGEATQADYIQVM 236
BLAST of mRNA_H-paniculata_contig2108.5509.1 vs. uniprot
Match: D7FXN7_ECTSI (1,3-beta-glucan synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN7_ECTSI) HSP 1 Score: 288 bits (736), Expect = 7.050e-86 Identity = 147/232 (63.36%), Postives = 187/232 (80.60%), Query Frame = 1
Query: 4 YVVSCQVFSKMDKSKKKADKDKAEYIKMLAKNYPGLRIAYVEEVK-GHFYSVLTRHNG--TEMEEEYRVRLPGQILVGEGKPNNQNHAIIFTRGEAIQAIDMNQDASLEDAIKVRQVMEEFKFAEGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDVFDRMSAITIGGISKSCKGIHLSEDIFAGFNYVLRGGEATQADYIQV 690
YVVSCQ +K+ +S K D+ KA+ +++L + +P L++AYVE K G +SVL R++ + + ++Y V LPG IL+GEGKPNNQNHAIIFTRGEA+QAIDMNQD SLEDA+K RQ++ EF F GG N RIVGFRE VFTHDVS++ANFFSLQEL+FV++ QR LD PL VRFHYGHPD+FD++SA+T+GGISK+ KGI+LSEDIF GFN++LRGG+ATQA+YIQV
Sbjct: 1210 YVVSCQQHAKLLRSGKDEDRAKAKSVELLMEMHPSLKVAYVESGKDGRHHSVLIRYDEARSRIVKQYEVELPGPILLGEGKPNNQNHAIIFTRGEAVQAIDMNQDGSLEDALKARQLLGEFDFNGGG-----NHARIVGFREFVFTHDVSSIANFFSLQELSFVTSIQRFLDKPLAVRFHYGHPDLFDKVSAMTLGGISKASKGINLSEDIFGGFNFILRGGKATQAEYIQV 1436
BLAST of mRNA_H-paniculata_contig2108.5509.1 vs. uniprot
Match: A0A835ZD62_9STRA (1,3-beta-glucan synthase component-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD62_9STRA) HSP 1 Score: 258 bits (658), Expect = 1.370e-78 Identity = 129/176 (73.30%), Postives = 147/176 (83.52%), Query Frame = 1
Query: 181 MEEEYRVRLPGQILVGEGKPNNQNHAIIFTRGEAIQAIDMNQDASLEDAIKVRQVMEEFKFAE------GGTGR-GRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDVFDRMSAITIGGISKSCKGIHLSEDIFAGFNYVLRGGEATQADYIQ 687
M EEYRV LPGQILVGEGKPNNQNHAIIFTRGEAIQAIDMNQD SLE+A+K R++++EF F E GG R N+GRIVGFREHVFTH+VS++ANFFSLQE FV+ATQR LD PL +RFHYGHPDVFD+ +AIT GGIS+ KGIHLSEDIFAGF +VLRGG ++Q DYIQ
Sbjct: 1 MLEEYRVELPGQILVGEGKPNNQNHAIIFTRGEAIQAIDMNQDGSLEEALKQREMLQEFGFGERRIGLLGGRSREAPNLGRIVGFREHVFTHNVSSIANFFSLQETGFVTATQRVLDEPLAIRFHYGHPDVFDKTTAITQGGISRPSKGIHLSEDIFAGFYWVLRGGRSSQLDYIQ 176
BLAST of mRNA_H-paniculata_contig2108.5509.1 vs. uniprot
Match: A0A6H5L5X7_9PHAE (GT48 protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5X7_9PHAE) HSP 1 Score: 257 bits (656), Expect = 6.920e-77 Identity = 133/214 (62.15%), Postives = 169/214 (78.97%), Query Frame = 1
Query: 4 YVVSCQVFSKMDKSKKKADKDKAEYIKMLAKNYPGLRIAYVEEVK-GHFYSVLTRHNG--TEMEEEYRVRLPGQILVGEGKPNNQNHAIIFTRGEAIQAIDMNQDASLEDAIKVRQVMEEFKFAEGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDVFDRMSAITIGGISKSCKGIHLSEDIFAG 636
YVVSCQ +K+ +S K D+ KA+ +++L + +P L++AYVE K G +SVL R++ + + ++Y V LPG IL+GEGKPNNQNHAIIFTRGEA+QAIDMNQD SLEDA+K RQ++ EF F GG N RIVGFRE VFTHDVS++ANFFSLQEL+FV++ QR LD PL VRFHYGHPD+FD++SA+T+GGISK+ KGI+LSEDIF G
Sbjct: 636 YVVSCQQHAKLLRSGKDEDRAKAKSVELLMEMHPSLKVAYVESGKDGRHHSVLIRYDEARSRIVKQYEVELPGPILLGEGKPNNQNHAIIFTRGEAVQAIDMNQDGSLEDALKARQLLGEFDFNGGG-----NHARIVGFREFVFTHDVSSIANFFSLQELSFVTSIQRFLDKPLAVRFHYGHPDLFDKVSAMTLGGISKASKGINLSEDIFGG 844
BLAST of mRNA_H-paniculata_contig2108.5509.1 vs. uniprot
Match: A0A836C8X3_9STRA (1,3-beta-glucan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8X3_9STRA) HSP 1 Score: 261 bits (668), Expect = 9.560e-77 Identity = 139/240 (57.92%), Postives = 174/240 (72.50%), Query Frame = 1
Query: 1 RYVVSCQVFSKMDKSKKKADKDKAEYIKMLAKNYPGLRIAYVEEVKG--------HFYSVLTRHNGTEMEEEYRVRLPGQILVGEGKPNNQNHAIIFTRGEAIQAIDMNQDASLEDAIKVRQVMEEFKFAEGGTGRGR---NIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDVFDRMSAITIGGISKSCKGIHLSEDIFAGFNYVLRGGEATQADYIQ 687
RYVVSCQ+ M K K +A YI LA+N+PGL IAYV EVK YSVL R +G ++EE+R++LPG ILVGEGKPNNQN A++FTRG+A+QAIDMNQD LE+A K R+++ F+F GG RG N G IVGFREH+FTH SAVA +FSLQE FV+ATQR LD+PL +RFHYGHPD+FD+++AIT GG S+ +HLSEDI AG+ +VLRGG++ Q D+IQ
Sbjct: 1094 RYVVSCQILPAMRLKKAK----EAVYIDWLAQNHPGLCIAYVLEVKEDTGGEKTHEHYSVLARWSGDSLKEEHRIQLPGTILVGEGKPNNQNQAMVFTRGDAVQAIDMNQDLGLEEAFKQREMLANFRF--GGHARGERAHNAGLIVGFREHIFTHAASAVAMYFSLQESGFVTATQRVLDDPLGIRFHYGHPDLFDKITAITQGGNSRPSTKLHLSEDILAGYVWVLRGGDSIQLDFIQ 1327
BLAST of mRNA_H-paniculata_contig2108.5509.1 vs. uniprot
Match: A0A453DH39_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453DH39_AEGTS) HSP 1 Score: 231 bits (590), Expect = 7.530e-71 Identity = 132/242 (54.55%), Postives = 168/242 (69.42%), Query Frame = 1
Query: 4 YVVSCQVFSKMDKSKKKADKDKAEYIKML--AKNYPGLRIAYVEEVKGH---------FYSVLTRHNGTEMEEE-YRVRLPGQIL-VGEGKPNNQNHAIIFTRGEAIQAIDMNQDASLEDAIKVRQVMEEFKFAEGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDVFDRMSAITIGGISKSCKGIHLSEDIFAGFNYVLRGGEATQADYIQV 690
YVVSCQV+ M K K A K+KA Y+ +L YP LRIAY++EV+ +YSVL + G + +EE YR++LPG+ +GEGKP NQNHAIIFTRGEA+Q IDMNQD LE+A K+R V+EEF+ T G++ I+G REH+FT VS++A F S QE +FV+ QR L NPL VRFHYGHPD+FDR+ IT GGISK+ K I+LSEDIF+GFN +RGG T +Y+QV
Sbjct: 146 YVVSCQVYG-MQKVSKDA-KEKARYLNILNLMMMYPSLRIAYIDEVEAPNKDGMTEKTYYSVLVKGVGDKYDEEIYRIKLPGKPTNIGEGKPENQNHAIIFTRGEALQVIDMNQDNYLEEAFKMRNVLEEFE----STKYGKSKPTILGLREHIFTGSVSSLAWFMSNQETSFVTIGQRVLANPLKVRFHYGHPDIFDRLFHITRGGISKASKTINLSEDIFSGFNSTMRGGNITHHEYMQV 381
BLAST of mRNA_H-paniculata_contig2108.5509.1 vs. uniprot
Match: A0A453DH34_AEGTS (Uncharacterized protein n=4 Tax=Triticinae TaxID=1648030 RepID=A0A453DH34_AEGTS) HSP 1 Score: 231 bits (590), Expect = 2.390e-67 Identity = 132/242 (54.55%), Postives = 168/242 (69.42%), Query Frame = 1
Query: 4 YVVSCQVFSKMDKSKKKADKDKAEYIKML--AKNYPGLRIAYVEEVKGH---------FYSVLTRHNGTEMEEE-YRVRLPGQIL-VGEGKPNNQNHAIIFTRGEAIQAIDMNQDASLEDAIKVRQVMEEFKFAEGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDVFDRMSAITIGGISKSCKGIHLSEDIFAGFNYVLRGGEATQADYIQV 690
YVVSCQV+ M K K A K+KA Y+ +L YP LRIAY++EV+ +YSVL + G + +EE YR++LPG+ +GEGKP NQNHAIIFTRGEA+Q IDMNQD LE+A K+R V+EEF+ T G++ I+G REH+FT VS++A F S QE +FV+ QR L NPL VRFHYGHPD+FDR+ IT GGISK+ K I+LSEDIF+GFN +RGG T +Y+QV
Sbjct: 140 YVVSCQVYG-MQKVSKDA-KEKARYLNILNLMMMYPSLRIAYIDEVEAPNKDGMTEKTYYSVLVKGVGDKYDEEIYRIKLPGKPTNIGEGKPENQNHAIIFTRGEALQVIDMNQDNYLEEAFKMRNVLEEFE----STKYGKSKPTILGLREHIFTGSVSSLAWFMSNQETSFVTIGQRVLANPLKVRFHYGHPDIFDRLFHITRGGISKASKTINLSEDIFSGFNSTMRGGNITHHEYMQV 375
BLAST of mRNA_H-paniculata_contig2108.5509.1 vs. uniprot
Match: A0A7S3U6Q4_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3U6Q4_9SPIT) HSP 1 Score: 233 bits (593), Expect = 3.670e-67 Identity = 123/252 (48.81%), Postives = 170/252 (67.46%), Query Frame = 1
Query: 4 YVVSCQVFS--KMDKSKKKADKDKAEYIKMLAKNYPGLRIAYVEEVKG-----------------HFYSVL---TRHNGTE-MEEEYRVRLPGQILVGEGKPNNQNHAIIFTRGEAIQAIDMNQDASLEDAIKVRQVMEEFKFAEGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDVFDRMSAITIGGISKSCKGIHLSEDIFAGFNYVLRGGEATQADYIQV 690
YVVSCQ++ K ++ K AD + L + +P LR+AYV++ FYSVL ++ G E +++ YRV+LPG +++GEGKP NQNHA+IFTRGEA+QAIDMNQ LE+A+K+R ++ EF+ G T IVGFREH+FT +S++A++ +LQE FV+ TQR L NPLH+R HYGHPDVFD++ A+T GG+SK+ KGIHLSED++AGFN+ LRGG+ A+Y+QV
Sbjct: 313 YVVSCQMYGTHKRNRDPKAADTE------FLLQRFPNLRVAYVDKTSTLSKIPYPDGTSALRETIRFYSVLIKGSKEGGEEAVQQVYRVQLPGDMMLGEGKPENQNHAVIFTRGEALQAIDMNQCGYLEEALKMRNLLGEFRKTPGAT--------IVGFREHIFTGQLSSLASYMALQEGTFVTLTQRVLSNPLHIRQHYGHPDVFDKIFALTTGGVSKASKGIHLSEDVYAGFNHTLRGGKVPYAEYVQV 550
BLAST of mRNA_H-paniculata_contig2108.5509.1 vs. uniprot
Match: A0A8J2T241_9STRA (1,3-beta-glucan synthase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T241_9STRA) HSP 1 Score: 232 bits (592), Expect = 1.570e-66 Identity = 121/238 (50.84%), Postives = 165/238 (69.33%), Query Frame = 1
Query: 4 YVVSCQVFSKMDKSKKKADKD-KAEYIKMLAKNYPGLRIAYVEEVKGH------FYSVLTRHNGTE--MEEEYRVRLPGQILVGEGKPNNQNHAIIFTRGEAIQAIDMNQDASLEDAIKVRQVMEEFKFAEGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDVFDRMSAITIGGISKSCKGIHLSEDIFAGFNYVLRGGEATQADYIQV 690
YVV+CQ++ + A +D KA+ I+ML K +P LR+AY++E + + FYS L +H+ T E YRVRLPG +VGEGKP NQNHA++FTRGE +Q IDMNQD E+A+K R +++EF+ G G IVGFREH+FT VS++AN+ +LQEL+FV+ QR L +PLH+R HYGHPD+FD++ T GG+SK+ +GI+LSEDIFAG+ V+RGG T +Y QV
Sbjct: 1480 YVVTCQIYGRQS-----AQQDPKAKDIEMLLKRFPLLRVAYIDEQRVNRSGASAFYSCLVKHDATTDGPAEVYRVRLPGNAIVGEGKPENQNHAVVFTRGETLQTIDMNQDGFFEEALKTRNLVQEFR---GPRAPGAPPVVIVGFREHIFTGSVSSLANYMALQELSFVTLGQRVLADPLHMRLHYGHPDIFDKLWFTTRGGVSKASRGINLSEDIFAGYTAVIRGGGVTMREYAQV 1709
BLAST of mRNA_H-paniculata_contig2108.5509.1 vs. uniprot
Match: A0A087GZ47_ARAAL (Uncharacterized protein n=2 Tax=Arabis alpina TaxID=50452 RepID=A0A087GZ47_ARAAL) HSP 1 Score: 221 bits (564), Expect = 1.600e-66 Identity = 126/238 (52.94%), Postives = 152/238 (63.87%), Query Frame = 1
Query: 4 YVVSCQVFSKMDKSKKKADKDKAEYIKMLAKNYPGLRIAYVEEVKGH--------FYSVLTRHNGTEMEEEYRVRLPGQIL-VGEGKPNNQNHAIIFTRGEAIQAIDMNQDASLEDAIKVRQVMEEFKFAEGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDVFDRMSAITIGGISKSCKGIHLSEDIFAGFNYVLRGGEATQADYIQV 690
YVVSCQV+ KS ++ I L YP LR+AYV+E + FYSVL + EE YR++LPG +GEGKP NQNHAIIFTRGEA+Q IDMNQD E+A K+R V+EEF G R I+G REH+FT VS++A F S QE +FV+ QR L NPL VRFHYGHPD+FDR+ IT GG+SK+ K I+LSEDIF GFN LRGG T +YIQV
Sbjct: 207 YVVSCQVYGTQKKSGDIHNRSCYTNILQLMLKYPSLRVAYVDEREETADAKSPKVFYSVLLKGGNKFDEEIYRIKLPGPPAEIGEGKPENQNHAIIFTRGEALQTIDMNQDNYFEEAFKIRNVLEEFNKERAG----RRKPTILGLREHIFTGSVSSLAWFMSNQESSFVTIGQRILANPLRVRFHYGHPDIFDRIFHITRGGVSKASKVINLSEDIFGGFNSTLRGGYVTHHEYIQV 440 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2108.5509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2108.5509.1 >prot_H-paniculata_contig2108.5509.1 ID=prot_H-paniculata_contig2108.5509.1|Name=mRNA_H-paniculata_contig2108.5509.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=231bp RYVVSCQVFSKMDKSKKKADKDKAEYIKMLAKNYPGLRIAYVEEVKGHFYback to top mRNA from alignment at H-paniculata_contig2108:2644..4662- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2108.5509.1 ID=mRNA_H-paniculata_contig2108.5509.1|Name=mRNA_H-paniculata_contig2108.5509.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2019bp|location=Sequence derived from alignment at H-paniculata_contig2108:2644..4662- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2108:2644..4662- >mRNA_H-paniculata_contig2108.5509.1 ID=mRNA_H-paniculata_contig2108.5509.1|Name=mRNA_H-paniculata_contig2108.5509.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1386bp|location=Sequence derived from alignment at H-paniculata_contig2108:2644..4662- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |