mRNA_H-paniculata_contig21070.5507.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21070.5507.1
Unique NamemRNA_H-paniculata_contig21070.5507.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig21070.5507.1 vs. uniprot
Match: D7G057_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G057_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 1.660e-14
Identity = 34/44 (77.27%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    1 QADQFQSLVGSVAALCNGAGRLFWGNMLDVFGFKNMFSALAALQ 132
            ++DQFQSLVGSVAALCN AGRLFWGN+LDV  FK++F+ALA LQ
Sbjct:  362 KSDQFQSLVGSVAALCNAAGRLFWGNLLDVVQFKSLFAALAVLQ 405
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BLAST of mRNA_H-paniculata_contig21070.5507.1 vs. uniprot
Match: A0A835ZED6_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZED6_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 2.460e-12
Identity = 32/42 (76.19%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    7 DQFQSLVGSVAALCNGAGRLFWGNMLDVFGFKNMFSALAALQ 132
            DQFQSLVGSVAAL NG GRLFWGNMLD  GF   F+AL  LQ
Sbjct:  337 DQFQSLVGSVAALANGTGRLFWGNMLDAAGFNRPFAALVTLQ 378
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BLAST of mRNA_H-paniculata_contig21070.5507.1 vs. uniprot
Match: A0A482S9R2_9ARCH (MFS transporter (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S9R2_9ARCH)

HSP 1 Score: 58.5 bits (140), Expect = 6.180e-9
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    7 DQFQSLVGSVAALCNGAGRLFWGNMLDVFGFKNMFSALAALQ 132
            D FQ+ VG + AL NG GRLFWG++ D+ GFKN F  L ALQ
Sbjct:  113 DAFQAFVGGIGALFNGFGRLFWGSVSDIIGFKNSFMVLTALQ 154
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BLAST of mRNA_H-paniculata_contig21070.5507.1 vs. uniprot
Match: UPI000B459BC3 (uncharacterized protein LOC110457592 n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=UPI000B459BC3)

HSP 1 Score: 47.0 bits (110), Expect = 7.110e-5
Identity = 19/35 (54.29%), Postives = 25/35 (71.43%), Query Frame = 1 
Query:    7 DQFQSLVGSVAALCNGAGRLFWGNMLDVFGFKNMF 111
            D F ++VGS+AA+CNG GR+ WG + D F FK  F
Sbjct:  137 DHFLAIVGSLAAVCNGGGRILWGYLADKFCFKASF 171
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21070.5507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G057_ECTSI1.660e-1477.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZED6_9STRA2.460e-1276.19Major facilitator superfamily domain-containing pr... [more]
A0A482S9R2_9ARCH6.180e-959.52MFS transporter (Fragment) n=1 Tax=archaeon TaxID=... [more]
UPI000B459BC37.110e-554.29uncharacterized protein LOC110457592 n=1 Tax=Mizuh... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21070contigH-paniculata_contig21070:304..438 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.3
Seed ortholog evalue1.6e-11
Seed eggNOG ortholog2880.D7G057
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.monocarboxylate transporter
EggNOG OGsKOG2504@1,KOG2504@2759
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929558.233453-CDS-H-paniculata_contig21070:303..4381622929558.233453-CDS-H-paniculata_contig21070:303..438Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21070 304..438 -
1691480913.102894-CDS-H-paniculata_contig21070:303..4381691480913.102894-CDS-H-paniculata_contig21070:303..438Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21070 304..438 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21070.5507.1prot_H-paniculata_contig21070.5507.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21070 304..438 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21070.5507.1

>prot_H-paniculata_contig21070.5507.1 ID=prot_H-paniculata_contig21070.5507.1|Name=mRNA_H-paniculata_contig21070.5507.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=45bp
QADQFQSLVGSVAALCNGAGRLFWGNMLDVFGFKNMFSALAALQV
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mRNA from alignment at H-paniculata_contig21070:304..438-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21070.5507.1 ID=mRNA_H-paniculata_contig21070.5507.1|Name=mRNA_H-paniculata_contig21070.5507.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=135bp|location=Sequence derived from alignment at H-paniculata_contig21070:304..438- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCGGACCAGTTCCAATCGTTGGTGGGGTCTGTGGCCGCTCTGTGCAA
CGGTGCCGGACGACTCTTTTGGGGTAACATGCTGGACGTTTTCGGGTTCA
AGAACATGTTTTCCGCATTAGCAGCGCTGCAGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig21070:304..438-

>mRNA_H-paniculata_contig21070.5507.1 ID=mRNA_H-paniculata_contig21070.5507.1|Name=mRNA_H-paniculata_contig21070.5507.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at H-paniculata_contig21070:304..438- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCGGACCAGTTCCAATCGTTGGTGGGGTCTGTGGCCGCTCTGTGCAA
CGGTGCCGGACGACTCTTTTGGGGTAACATGCTGGACGTTTTCGGGTTCA
AGAACATGTTTTCCGCATTAGCAGCGCTGCAGGTACAGGCGGACCAGTTC
CAATCGTTGGTGGGGTCTGTGGCCGCTCTGTGCAACGGTGCCGGACGACT
CTTTTGGGGTAACATGCTGGACGTTTTCGGGTTCAAGAACATGTTTTCCG
CATTAGCAGCGCTGCAGGTA
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