mRNA_H-paniculata_contig2105.5502.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2105.5502.1
Unique NamemRNA_H-paniculata_contig2105.5502.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2105.5502.1 vs. uniprot
Match: D7FIW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIW1_ECTSI)

HSP 1 Score: 298 bits (763), Expect = 3.750e-95
Identity = 172/322 (53.42%), Postives = 208/322 (64.60%), Query Frame = 3 
Query:   33 GSQLAVSKRLERAERKRAQAAAEAAD--DEDSSMWELKYSFQDPVGVIRITEDWSGEGNGIAGLQWLGGVFLSRYMDSRQVFPEDFFVGQRIIEVGAGCGLTSIYLAIRGAEVTITDMDIDKCLGNVETNLAPRGLTGNVCVRRLKWGSAEDLSSFNPPYDVVVAGDCLYEEACITPLLETMWELAGPDTDIFLCGVVGYGILESFLRQVDTYFSRALIDASKVDTLANVQGMKPTNSTPATRVDPPPATTSPIC-PSDSDPD---KNFCEATTTATATMGRSANG----------GQRSGGADAAERPGQRALLWLRKKME 950
            G     +KR ERA RK  Q   EAA   D+ SS+  LKYSFQ+PVG I ITEDWSG+GNG+AGLQW GGV LSRYMD RQ FPED FVG+R+IEVGAGCGLTSIY A+RGA+VTITDMD  KC  NV+ NL PRGL+G   VRRL+W  A +L+ F PPYD+V+AGDCLYEEACI+PLL+TMW L+GP+T++ L GVVG+ +L SFL Q   YF    +D SK+DTLA    +   N + A  V+   A       P+  DPD   ++  E         G    G          G  S  A  A+ PGQRAL+ LRKK +
Sbjct:   24 GGSAGDAKRRERAARKLEQQETEAAAGIDDGSSIMTLKYSFQEPVGDIHITEDWSGDGNGLAGLQWPGGVVLSRYMDCRQAFPEDHFVGRRVIEVGAGCGLTSIYTALRGADVTITDMDPAKCTDNVDMNLDPRGLSGKASVRRLEWDCAAELALFEPPYDIVIAGDCLYEEACISPLLKTMWALSGPNTEVLLSGVVGHSVLASFLGQARQYFELETVDTSKIDTLAEELPLG--NQSDAAAVEAALARARATAEPTGLDPDAAARSVAERGPEEERKAGGGVGGPQVKAALGGEGVESELAAVAQLPGQRALMRLRKKCD 343
[Close]
BLAST of mRNA_H-paniculata_contig2105.5502.1 vs. uniprot
Match: A0A6H5L0W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0W2_9PHAE)

HSP 1 Score: 280 bits (715), Expect = 1.850e-89
Identity = 138/207 (66.67%), Postives = 161/207 (77.78%), Query Frame = 3 
Query:   33 GSQLAVSKRLERAERKRAQAAAEAAD--DEDSSMWELKYSFQDPVGVIRITEDWSGEGNGIAGLQWLGGVFLSRYMDSRQVFPEDFFVGQRIIEVGAGCGLTSIYLAIRGAEVTITDMDIDKCLGNVETNLAPRGLTGNVCVRRLKWGSAEDLSSFNPPYDVVVAGDCLYEEACITPLLETMWELAGPDTDIFLCGVVGYGILESFL 647
            G     +KR ERA RK  Q   EAA   D+ SSM  LKYSFQ+PVG I ITEDWSG+GNG+AGLQW GGV LSRYMD RQ FPED FVG+R+IEVGAGCGLTSIY A+RGA VTITDMD  KC  NV+ NL PRGL+G   VRRL+W  A +L+ F PPYDV++AGDCLYEEACI+PLL+TMW L+GP+T++ L GVVG+ +L SFL
Sbjct:   19 GGSAGDAKRRERAARKLEQQETEAAAGIDDGSSMMTLKYSFQEPVGDIHITEDWSGDGNGLAGLQWPGGVVLSRYMDCRQAFPEDHFVGRRVIEVGAGCGLTSIYTALRGANVTITDMDPAKCADNVDMNLDPRGLSGKASVRRLEWDCAAELAMFEPPYDVIIAGDCLYEEACISPLLKTMWALSGPNTEVLLSGVVGHSVLASFL 225
[Close]
BLAST of mRNA_H-paniculata_contig2105.5502.1 vs. uniprot
Match: A0A836C9A2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9A2_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.730e-26
Identity = 54/113 (47.79%), Postives = 74/113 (65.49%), Query Frame = 3 
Query:  378 MDIDKCLGNVETNLAPRGLT-GNVCVRRLKWGSAEDLSSFNPPYDVVVAGDCLYEEACITPLLETMWELAGPDTDIFLCGVVGYGILESFLRQVDTYFSRALIDASKVDTLAN 713
            MD +KC  ++E N   RGL    V V  L WG   D++   PP+D+++AGDCLY+EACI PLL+TM  LA  DT + LCG VG  I++SF  +VD YF R ++D   +DTL++
Sbjct:    1 MDTEKCRDSIEANFEHRGLPLDTVQVEELVWGQT-DVTPLQPPFDIILAGDCLYQEACIEPLLQTMHSLASEDTLVLLCGAVGPKIIDSFNEKVDRYFERRVVDTKTIDTLSD 112
[Close]
BLAST of mRNA_H-paniculata_contig2105.5502.1 vs. uniprot
Match: A0A1S3UK84_VIGRR (protein N-lysine methyltransferase METTL21A n=5 Tax=indigoferoid/millettioid clade TaxID=2233855 RepID=A0A1S3UK84_VIGRR)

HSP 1 Score: 97.1 bits (240), Expect = 3.130e-19
Identity = 56/165 (33.94%), Postives = 85/165 (51.52%), Query Frame = 3 
Query:  204 GIAG-LQWLGGVFLSRYMDSRQVFPEDFFVGQRIIEVGAGCGLTSIYLAIRGAEVTITDMD--IDKCLGNVETNLAPRGLTGNVCVRRLKWGSAEDLSSFNPPYDVVVAGDCLYEEACITPLLETMWELAGPDTDIFLCGVVGYG-ILESFLRQVDTYFSRALID 686
            G+ G + W  GV L ++++           G++I+E+G+GCGL     A+ G EV +TD+   +     N+ETN+    L G++    L WG   D    +P  D V+  D +Y E  +  LLET+ +L+GP+T IFL G +    ILE FL      FS   +D
Sbjct:   84 GVTGAVMWDSGVVLGKFLEHSVDSGMLVLQGKKIVELGSGCGLVGCIAALLGGEVVVTDLPDRLRLLRKNIETNMKHVSLRGSITATELTWGEDPDSKLIDPTPDFVLGSDVVYSEGAVVDLLETLMQLSGPNTTIFLAGELRNDVILEYFLEAAMNNFSIGRVD 248
[Close]
BLAST of mRNA_H-paniculata_contig2105.5502.1 vs. uniprot
Match: A0A1J7IL07_LUPAN (Uncharacterized protein n=3 Tax=Lupinus TaxID=3869 RepID=A0A1J7IL07_LUPAN)

HSP 1 Score: 95.9 bits (237), Expect = 8.520e-19
Identity = 62/193 (32.12%), Postives = 94/193 (48.70%), Query Frame = 3 
Query:  123 SMWELKYSFQDPVGVIRITEDWSGEGN-GIAG-LQWLGGVFLSRYMDSRQVFPEDFFVGQRIIEVGAGCGLTSIYLAIRGAEVTITDMD--IDKCLGNVETNLAPRGLTGNVCVRRLKWGSAEDLSSFNPPYDVVVAGDCLYEEACITPLLETMWELAGPDTDIFLCGVV-GYGILESFLRQVDTYFSRALID 686
            S   LK S       + I +  S  G  G+ G + W  GV L ++++           G++I+E+G+GCGL     A+ G EV +TD+   +     N+ETN+    L G+V    L WG   D     P  D V+  D +Y E  +  LLET+ +L+GP+T IFL G +    ILE F+    + F+   +D
Sbjct:   59 SQTSLKLSLDSCGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHSVDSGMLLLQGKKIVELGSGCGLVGCIAALLGGEVILTDLPDRLRLLRKNIETNMRHGSLRGSVTATELTWGEDPDPEIVEPMPDYVLGSDVVYSEGAVIDLLETLGQLSGPNTTIFLAGELRNDAILEYFIEAAMSNFTIGRVD 251
[Close]
BLAST of mRNA_H-paniculata_contig2105.5502.1 vs. uniprot
Match: A0A445GHX7_GLYSO (Protein N-lysine methyltransferase METTL21A isoform C n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445GHX7_GLYSO)

HSP 1 Score: 94.0 bits (232), Expect = 1.710e-18
Identity = 53/153 (34.64%), Postives = 81/153 (52.94%), Query Frame = 3 
Query:  204 GIAG-LQWLGGVFLSRYMDSRQVFPEDFFVGQRIIEVGAGCGLTSIYLAIRGAEVTITDMD--IDKCLGNVETNLAPRGLTGNVCVRRLKWGSAEDLSSFNPPYDVVVAGDCLYEEACITPLLETMWELAGPDTDIFLCGVV-GYGILESFLR 650
            G+ G + W  GV L ++++           G++I+E+G+GCGL      + G+EV +TD+   +     N+ETN+    L G+V    L WG   D    +P  D V+  D +Y E  +  LLET+ +L+GP+T IFL G +    ILE FL 
Sbjct:   42 GVTGAVMWDSGVVLGKFLEHAVDSGMLVLQGKKIVELGSGCGLVGCIATLLGSEVIVTDLPDRLRLLRKNIETNMKHVSLRGSVTATELTWGEDPDPELIDPKPDFVIGSDVVYSEGAVVDLLETLMQLSGPNTTIFLAGELRNDAILEYFLE 194
[Close]
BLAST of mRNA_H-paniculata_contig2105.5502.1 vs. uniprot
Match: G7KPC6_MEDTR (Methyltransferase family protein n=6 Tax=IRL clade TaxID=2233839 RepID=G7KPC6_MEDTR)

HSP 1 Score: 94.4 bits (233), Expect = 2.790e-18
Identity = 55/165 (33.33%), Postives = 87/165 (52.73%), Query Frame = 3 
Query:  204 GIAG-LQWLGGVFLSRYMDSRQVFPEDFFVGQRIIEVGAGCGLTSIYLAIRGAEVTITDM-DIDKCLG-NVETNLAPRGLTGNVCVRRLKWGSAEDLSSFNPPYDVVVAGDCLYEEACITPLLETMWELAGPDTDIFLCGVV-GYGILESFLRQVDTYFSRALID 686
            G+ G + W  G+ L ++++           G++I+E+G+GCGL     A+ G EV +TD+ D  + L  N+ETN+    L G++    L WG   D    +P  D ++  D +Y E  +  LLET+ +L+GP+T IFL G +    ILE FL      F+   +D
Sbjct:   83 GVTGSVMWDSGIVLGKFLEHSVDSGMLVLQGKKIVELGSGCGLVGCIAALLGGEVILTDLPDRMRLLRKNIETNMKHISLRGSITATELTWGDDPDQELIDPTPDYILGSDVVYSEGAVVDLLETLGQLSGPNTTIFLAGELRNDAILEYFLEAAMNDFTIGRVD 247
[Close]
BLAST of mRNA_H-paniculata_contig2105.5502.1 vs. uniprot
Match: A0A6P4DF82_ARADU (protein N-lysine methyltransferase METTL21A n=5 Tax=Arachis TaxID=3817 RepID=A0A6P4DF82_ARADU)

HSP 1 Score: 95.1 bits (235), Expect = 2.820e-18
Identity = 63/189 (33.33%), Postives = 91/189 (48.15%), Query Frame = 3 
Query:  135 LKYSFQDPVGVIRITEDWSGEGN-GIAG-LQWLGGVFLSRYMDSRQVFPEDFFVGQRIIEVGAGCGLTSIYLAIRGAEVTITDMD--IDKCLGNVETNLAPRGLTGNVCVRRLKWGSAEDLSSFNPPYDVVVAGDCLYEEACITPLLETMWELAGPDTDIFLCGVV-GYGILESFLRQVDTYFSRALID 686
            LK S       + I +  S  G  G+ G + W  GV L ++++           G++I+E+G+GCGL     A+ G EV +TD+   +     N+ETN+    L G+V    L WG   DL    P  D V+  D +Y E  +  LLET+ +L GP+T IFL G +    ILE FL      F    +D
Sbjct:   97 LKLSIDSCGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHSVDSGMLVLQGKKIVELGSGCGLVGCIAALLGGEVILTDLPDRLRLLRKNIETNMKQFCLRGSVTATELIWGDDADLELVKPMPDYVLGSDVVYSEGAVEDLLETLGQLCGPNTTIFLAGELRNDAILEYFLEAAMNNFRIGRVD 285
[Close]
BLAST of mRNA_H-paniculata_contig2105.5502.1 vs. uniprot
Match: A0A0B2PMQ8_GLYSO (Methyltransferase-like protein 21D n=7 Tax=Phaseoleae TaxID=163735 RepID=A0A0B2PMQ8_GLYSO)

HSP 1 Score: 94.0 bits (232), Expect = 4.030e-18
Identity = 53/153 (34.64%), Postives = 81/153 (52.94%), Query Frame = 3 
Query:  204 GIAG-LQWLGGVFLSRYMDSRQVFPEDFFVGQRIIEVGAGCGLTSIYLAIRGAEVTITDMD--IDKCLGNVETNLAPRGLTGNVCVRRLKWGSAEDLSSFNPPYDVVVAGDCLYEEACITPLLETMWELAGPDTDIFLCGVV-GYGILESFLR 650
            G+ G + W  GV L ++++           G++I+E+G+GCGL      + G+EV +TD+   +     N+ETN+    L G+V    L WG   D    +P  D V+  D +Y E  +  LLET+ +L+GP+T IFL G +    ILE FL 
Sbjct:   86 GVTGAVMWDSGVVLGKFLEHAVDSGMLVLQGKKIVELGSGCGLVGCIATLLGSEVIVTDLPDRLRLLRKNIETNMKHVSLRGSVTATELTWGEDPDPELIDPKPDFVIGSDVVYSEGAVVDLLETLMQLSGPNTTIFLAGELRNDAILEYFLE 238
[Close]
BLAST of mRNA_H-paniculata_contig2105.5502.1 vs. uniprot
Match: UPI001CFA8ED0 (protein N-lysine methyltransferase METTL21A n=2 Tax=Anacardiaceae TaxID=4011 RepID=UPI001CFA8ED0)

HSP 1 Score: 93.6 bits (231), Expect = 6.230e-18
Identity = 57/168 (33.93%), Postives = 85/168 (50.60%), Query Frame = 3 
Query:  204 GIAG-LQWLGGVFLSRYMDSRQVFPEDFFVGQRIIEVGAGCGLTSIYLAIRGAEVTITDMD--IDKCLGNVETNLAPRGLTGNVCVRRLKWGSAEDLSSFNPPYDVVVAGDCLYEEACITPLLETMWELAGPDTDIFLCGVV-GYGILESFLRQVDTYFSRALIDASK 695
            G+ G + W  GV L ++++           G++I+E+G+GCGL     A+ GA+V +TD+   +     N+ETNL+   L G+  VR L WG   D     P  D V+  D +Y E  +  LL+T+ +L G  T IFL G +    ILE FL      F    +D S+
Sbjct:   93 GVTGSVMWDSGVVLGKFLEHAVDSGLLLLQGKKIVELGSGCGLVGCIAALLGAQVILTDLPDRLRLLKRNIETNLSHGDLRGSATVRELTWGDDPDQELIQPLPDYVLGSDVIYSEGAVEDLLDTLLQLCGTQTTIFLAGELRNDSILEYFLEAAMKDFVIGRVDQSE 260
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2105.5502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIW1_ECTSI3.750e-9553.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0W2_9PHAE1.850e-8966.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C9A2_9STRA1.730e-2647.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1S3UK84_VIGRR3.130e-1933.94protein N-lysine methyltransferase METTL21A n=5 Ta... [more]
A0A1J7IL07_LUPAN8.520e-1932.12Uncharacterized protein n=3 Tax=Lupinus TaxID=3869... [more]
A0A445GHX7_GLYSO1.710e-1834.64Protein N-lysine methyltransferase METTL21A isofor... [more]
G7KPC6_MEDTR2.790e-1833.33Methyltransferase family protein n=6 Tax=IRL clade... [more]
A0A6P4DF82_ARADU2.820e-1833.33protein N-lysine methyltransferase METTL21A n=5 Ta... [more]
A0A0B2PMQ8_GLYSO4.030e-1834.64Methyltransferase-like protein 21D n=7 Tax=Phaseol... [more]
UPI001CFA8ED06.230e-1833.93protein N-lysine methyltransferase METTL21A n=2 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2105contigH-paniculata_contig2105:11213..19928 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score293.1
Seed ortholog evalue1.5e-76
Seed eggNOG ortholog2880.D7FIW1
KEGG koko:K21806
Hectar predicted targeting categoryother localisation
EggNOG free text desc.lysine N-methyltransferase activity
EggNOG OGsKOG2793@1,KOG2793@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03019
Exons6
Model size1253
Cds size921
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2105.5502.1prot_H-paniculata_contig2105.5502.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2105 13090..19721 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929557.4232004-UTR-H-paniculata_contig2105:11212..113281622929557.4232004-UTR-H-paniculata_contig2105:11212..11328Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2105 11213..11328 +
1691480912.7391577-UTR-H-paniculata_contig2105:11212..113281691480912.7391577-UTR-H-paniculata_contig2105:11212..11328Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2105 11213..11328 +
1622929557.4560704-UTR-H-paniculata_contig2105:13080..130891622929557.4560704-UTR-H-paniculata_contig2105:13080..13089Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2105 13081..13089 +
1691480912.7513769-UTR-H-paniculata_contig2105:13080..130891691480912.7513769-UTR-H-paniculata_contig2105:13080..13089Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2105 13081..13089 +
1622929557.561609-UTR-H-paniculata_contig2105:19721..199281622929557.561609-UTR-H-paniculata_contig2105:19721..19928Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2105 19722..19928 +
1691480912.8120465-UTR-H-paniculata_contig2105:19721..199281691480912.8120465-UTR-H-paniculata_contig2105:19721..19928Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2105 19722..19928 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929557.473029-CDS-H-paniculata_contig2105:13089..132081622929557.473029-CDS-H-paniculata_contig2105:13089..13208Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2105 13090..13208 +
1691480912.7588844-CDS-H-paniculata_contig2105:13089..132081691480912.7588844-CDS-H-paniculata_contig2105:13089..13208Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2105 13090..13208 +
1622929557.4905927-CDS-H-paniculata_contig2105:15011..151541622929557.4905927-CDS-H-paniculata_contig2105:15011..15154Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2105 15012..15154 +
1691480912.766374-CDS-H-paniculata_contig2105:15011..151541691480912.766374-CDS-H-paniculata_contig2105:15011..15154Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2105 15012..15154 +
1622929557.5101206-CDS-H-paniculata_contig2105:16137..163491622929557.5101206-CDS-H-paniculata_contig2105:16137..16349Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2105 16138..16349 +
1691480912.7792876-CDS-H-paniculata_contig2105:16137..163491691480912.7792876-CDS-H-paniculata_contig2105:16137..16349Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2105 16138..16349 +
1622929557.5255222-CDS-H-paniculata_contig2105:17698..177521622929557.5255222-CDS-H-paniculata_contig2105:17698..17752Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2105 17699..17752 +
1691480912.7909405-CDS-H-paniculata_contig2105:17698..177521691480912.7909405-CDS-H-paniculata_contig2105:17698..17752Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2105 17699..17752 +
1622929557.5448408-CDS-H-paniculata_contig2105:19328..197211622929557.5448408-CDS-H-paniculata_contig2105:19328..19721Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2105 19329..19721 +
1691480912.8042483-CDS-H-paniculata_contig2105:19328..197211691480912.8042483-CDS-H-paniculata_contig2105:19328..19721Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2105 19329..19721 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2105.5502.1

>prot_H-paniculata_contig2105.5502.1 ID=prot_H-paniculata_contig2105.5502.1|Name=mRNA_H-paniculata_contig2105.5502.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=307bp
MWELKYSFQDPVGVIRITEDWSGEGNGIAGLQWLGGVFLSRYMDSRQVFP
EDFFVGQRIIEVGAGCGLTSIYLAIRGAEVTITDMDIDKCLGNVETNLAP
RGLTGNVCVRRLKWGSAEDLSSFNPPYDVVVAGDCLYEEACITPLLETMW
ELAGPDTDIFLCGVVGYGILESFLRQVDTYFSRALIDASKVDTLANVQGM
KPTNSTPATRVDPPPATTSPICPSDSDPDKNFCEATTTATATMGRSANGG
QRSGGADAAERPGQRALLWLRKKMEVDFNCVFERLPDGILPTRSEPSGED
GGDGGV*
back to top

mRNA from alignment at H-paniculata_contig2105:11213..19928+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2105.5502.1 ID=mRNA_H-paniculata_contig2105.5502.1|Name=mRNA_H-paniculata_contig2105.5502.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8716bp|location=Sequence derived from alignment at H-paniculata_contig2105:11213..19928+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCGAGAGAGGCCAGAAGAAGGTTGTGGTCGTGGCTCCCAGCTAGCAGTA
TCTAAGCGACTGGAGCGCGCTGAGCGCAAGCGGGCTCAGGCTGCTGCGGA
GGCGGCAGATGACGAGGTCAGCGGTTGCCACACAGTATAGAGTTGACATG
GTTCACATAACGTAGAGCAGTGCAACAGATGGTGCAGCCGCATATCTGGG
CGATTCCATATTTTTGGTCGGCGCTTGTCTAGTATCCTAAAAAATATGTG
GGACACTGAAGACATCTACGTGAAATAGTTTCATGCTCCGGACAAATACG
ATCACCAGATACGAAGAAATACGAGAAATCTGGAACGAATACTGTATCTG
TTTGAGTTGGGACAGATGTCCATGTGACGCGAATAATATGCATTGTGCTC
GGTATACCATGGAGCATGAAAAAACTCGGGAAGATGGAGTATTCAATCTG
TACAGTACCATCCGGAAAACAAACAGGACCTACATGTGTGACTGTTCGCC
GGGTATACGACCACCTGGTGACCATTTGTAGAGTGACCACTCATAGACTT
GTAAACGAATAAGTACATTTCTACCGAAGACAAATAATGATAGTTCGAGA
TAGTTGCGAATGCTCCATTCGTATTTGTCTGGGGGGGTGAATAGTTTTGC
CCACGCTGGTCATCATTAGGACATCTCTTATGGAATCGGATTTTTCCGAT
CGAATACAGATTTCGAATGTTTCTACTCCGAGAAATTCGATTTCCCATGT
TATGCGGTTGGATTTCTTGGAAATCTGAGTTGAGAAATCGGAGACGGGAG
GTACAGCCTGTCCCATTCCTCGATTTCTGGCAGAAATCAGAGTTTCCCGC
GCGTATCGAATTTCTTGGAGTACCACCACATGAGGGCGTTCATGTTATTT
TTCATCCAACGTTTGAAATGTCACAGCCTATAGCAATATACAACCACGAG
GATACAGACAAGCCAAGGTGTGTGACCCCCCCTGCCATACAGAACTTACG
GGACTGCTGGCCCGGAGGTTTCCTCCACCCAGCGGAGGAAGCTGTGAACC
GCGATCTTATCGTACAATTCAACCGCGGCCTTGTTCCTGTTGGCCTGAGA
CGTGGTCTCACCGTTCTGCTTCACATCAGTACAAGCGTACCACAGTGGTA
CACTCTACAGTGTCATCCACTGTGCCTTCCTGACAGCCGATTTGATCCCT
TGAGCGTTCATCTCACTCCACACCCATTCCACGCATAGGTTCGTCGTAAT
AGGCATCGTAGTTGACCGTACACTCATGATCGTGTGCTCTTTAAATGTGA
TGCGAGAGTGTGCGGGGGGATGTGCTGGAGGGTGGCGTGTACGAGGGTGA
TATCTTGAGTGGTGTGCTCGAGGACCCACCGTTGGAGGTGTGTTTGAAAT
TTGAACTACGCCTGCAAACCTTCATAAAATATCACCTTCGGAAAATCCGA
CCCCATCACAAACACGAATCGAATATTGAAAATGAGATTTTTGCACCCTT
CGAGAAATCGGAAAGTAGAGAAATTCGACTGGAAAAGTCCGACCCCATAA
CGGATGGCCTTACACACACTGTTGGTATTCCGCCATGCAGGTTGCCGCTT
TGTCCTTCACTCATCGTTGTGCGCGAAAACGGCACTCAAAAAGTTTACTG
TGTAGGTGAGATCCTGTCGTCTGTCTGTCTCTTGACTCGGCTATGAGGCG
GAAAATTATATTCGACAACGAACCGTTTCCCATTGCACCCCCTAGGTGAT
TTTTTATTCCTGATAGATTTACACAAGTGAACTTTGAAGTAAGCTGTGTA
ACCCCCCCCCCCCCCCCTTCCCCCCCCGCGCACACACTGTCGCATGATTG
CTTGTTTTGGTTTTACAGGATTCCTCAATGTGGGAGCTGAAATACTCTTT
CCAGGATCCGGTAGGTGTTATCCGCATAACGGAGGATTGGTCCGGGGAAG
GAAACGGAATTGCGGGGCTACAGTGGCTTGGTGGGGTCTTCCTGAGGTGA
GCGAGCGCTGAACATTCCATCCTCAGATAATACAAGGTCAAAGGTACATC
AGTCAAGACGGAGAAAAGGAGAAGAGGAATGAAGAGAGACAGACAAAAGG
CAGAAAGAGAAAGAGACAGATACGTGCTGTCCCATGTCGAGATGTAACTA
CCTCGCAGAAGTCGTTGGAGGACGTACCTTTTAACATATCTCGACCCTGG
TCCGAGTGTCAGGTTGTGATCCACCAACCGCAGCCTTGCATGAGCGGCGT
GCGTCTAACGGAGGAACACGTTTATGTCGTCTATAATCTTGAGCGGCGCG
AAAAACCCCACGCAGCTTGGCTCTTGACCTGATTTTGATGCGCTCCGAAC
GGTACGGATGTCCTTGAAGTCTCTGCAATGGCTTTGAATCATTCCATGAC
TGCAGTTGGTTTTGCTTGCGAAAACTCTGTTCTGATAAACTGGCTTCTTG
CTGCACAGTATAGAGACAAGACAGCGTCAAGACACGGTTCAAAATCAACC
TTGTCATGCCGACCCTGATCGTAACACATCGATTATTTGTCGATGTCAAC
CCGCGTGCGTAGGTAGCATCATTCCCTCCTTACTTTGTTCGCAGGGCTCC
TTACTTTGTTCGCAGGGGCTAGGTAATGACAAGTATATGCCACTTTGAAG
CACAAGCTGCATAGCCTCTGTATTAGCGCGTACACATGAAAAATCTACAT
GAATAGAAAAAATGAGGTCGTTTCATTTTGCACACCATCGCACGGCCCTC
CTAATTTGATATGTTTGTAGAATCAGTCACTCAGCAGTATTATCCCTTTG
ACAACTTGAGAAAAAAGAAGTTAAAGGAACACACAATTTTTTTCCAGGAA
GCCCAACATTCAATCACCAATCGCCTCATCAGTCATGTTGTCGTGTTCCG
ACTGCTACAACTTGTGGCAGCCTGCCTGTTGCTGTGTCTGGGGGGTATTA
TCATCACGCATAACAGGACGCCACTCATGCGCAGGCTATCGCTCGCTGCG
GAACTCTTGGGAGATACTGCTGCCTGCCAACTTATTTCCCTCTCGTTCTA
TTGTGCTGCGTAACCGCAGTATCACCATGCAGATATGATGGTACAGTAGT
ATACCATCTGCACTGCATGCAGTATTGTAGTACTATGTTCTGTTTTTTTC
TTTCGTCGCCGTCCGAAATTCGACAGTATCGTGCTGTTTCCGGTGTCCAG
CTGGCTGCCACCGCTCGATGAAATCAATTTGCGTACCACAGTCTGTCAGC
TGTACTACTATATCTCCACATGAACCAAACACCGCGTTTCGGTTGCAGCA
ATCATCCCTTTACGTACGTAAATGGTTGAAAAAAAGTGGATGACCCTTGA
GCTCGTAGATTCGCAGGCTCCTATGATAATGTACTGTTTCTACAATATGT
TGCAATCTGGCTATACTACTTAATATATATATATTGTTGATGAACGGATT
TGATCTTACCTTTGCGAACGGATTTGATCTTACCTTTGGCAAAGTATTCG
TATTCGTCGCAAATCGGATTACCCCCCCTCCCCTCATCCCAAAAGCACTC
CCCACCACCACTAGTGCATCACGGGACTTTTAGATTACGCAGGTCGCAAA
ATGTCGCAATACAAGACGCCAGGTATTACAGCCTTGAAATAATTGAGCAT
GCCGCCAATTTTGATGGATGGTTGTTTTCGGGATGTTTTCTATTTTTACC
TGTGCAGTTTTCATACCGGATTTTCTTATTGTTGTCCCATACTCTCCTGT
TGTCCAAATTGCCATACTGCCCCCATCCCGGCCCCCTACATGGAACCAGC
CGTTACATGGATAGTAGACAGGTCTTCCCAGAAGATTTCTTTGTGGGGCA
GCGAATAATTGAGGTGGGAGCGGGCTGTGGACTAACCAGTATCTACTTGG
CAATACGAGGAGCAGAAGTCACCATAACTGACATGGATATCGGTAAGCGA
TTGATTGCAGGTATGGTAGCGTCAGCGTTCGAATACGCTCAAAACGATCC
CGAGAAGAGAAAAAAACAACAGAAATGATGATTATCATCATGTACGTGAA
CCGTGTGCGATATTGCAATTATCCGGTGACGTTGGCGGGTGTGTTTGTGT
GAGTTTTAGAGAGAAAAGGTTGGCAATCGGTCCCACTCCACATATCCAAC
ACGCATGAGCCTTCCTAGCTCTATCTGTGCCGTAGATTTTCAGTGTATGG
GCAGTCCCGCGATTACTTCATTTTACCCAAAACTCCTGTTTTCTAAAGAA
GAAGCAAGGCTTGGCCGCACTGTCAAACGCGCACGTTCTTTGCCTCCAGA
TATATCTTGCCCAAGATCTTTCTGAGGGACCATACAGCTTGCGGTGTGAC
TGGTGACACCGTGCACCACGCGACACCACGTACAACACTGGATGCCAAGA
AACTTGCGTTCAGTAGCTTTTTTTTATCCCTGAAAAACTTACTTAGGAAG
TCCTGCGCTCTACTCAAAATGTGTGGCCCCATACCCATTTCTTTACACTT
GATGAATACTATACAGTAACTCTCGTTTCGGGTGAGACTGTACATAGACC
GTGAGCTTCGCACCGATAGGGCAATTCTGCTCAAGTCGTGTCGTATACTG
TAGTGTTCGAAAAGATGAGGCCGCAGAAGAAATATATATATATATCGCCT
TGCATGATCGATAGATAACACAACACATTGTGAACTACTATCGTATTGTT
GGGGATCGTTAAAAGTCAGCCATTAATTTGGTTTTCGAGCCCCGGTATGA
CTTGGCGACATCATTCTTGGACGATTTGCGAAACACAGCGTAGACTAGGA
TATCTATCTCGAGCTATCCACTGAGTAAGGGGCGCAATTCATTTTTTTAT
TTTTTATTCGTTTACCCACCCATGGTATGATGTCGCCACCTACCTACCCC
CATTGACTGCGGTCGCTCGATGCAGATAAATGCCTGGGCAATGTGGAGAC
AAATCTGGCTCCCCGGGGGTTGACTGGGAATGTTTGCGTACGGCGCTTAA
AGTGGGGGTCGGCGGAAGACCTATCCTCGTTCAACCCCCCGTACGACGTG
GTGGTTGCGGGCGATTGTCTGTACGAAGAGGCGTGTATTACGCCGCTCCT
CGAGACCATGTGGGAGCTGGCTGGGCCGGATACGGATGTAAGTCCTTTTG
TTTTTGTTCCATGAATAGGCAGATGACGGCAACAATATATTACTATACAC
AGCGCCAGTGGCGTGCCCAACTCTGACCGTGGACCCTCTTTCAAACTATT
CTGTGCCATATGCTATTTTCGAAAAAAAAACCTATGGAATAGAGAAAGGA
AACTGTTGAATAGAAAGTATCACGATTCCGAGATTAACGTTATCATTATT
ATCGCCATCTATACCGTGTTCATGGAGCAAGGATGTCTGCTGCGTTAGAC
GCTCGACGTAGCGAACCGAGGTGCCACTGCTGACTCAGAGGATGTGCTTG
CGAGAGTGATATTACAGGCTGGGTATCTCGCAAAGACGTGCTATGGTCTC
TTAACAATGATGACTGTTACCAGGAACAGTCTCGAGAATCGTCATGCAAG
AACAGGTTAATCCCTAAACGTACGACAGCTGATATATGGCATATTCAACA
CGTGTATGTTCCCTTTGTTGGGCAGTGTAAGTTCGAACATATTGGTGGTG
TGTCCTTCGCTTGTCGTGGTTTGGTTCGGTGGTATTTTTGTACTGGGAAA
ACAGGTGACCATGAAAAGAGCAGCCGGTTATGAAAAGAGCAGCTGGAGCA
GTCCATACAGCCTTTAGAAATCGCTCGTTGGACGTTTCTGCCACTGCGCA
GTAGGGGTTGGAAATGGACACGTTTGGAGGGTGCTGTTTTCGAAATACAA
CTGTTCACGGGTTGGGGATGCAGCCCGCCTTCACACATTCGGTTTCTGTG
CTCACTGAGCTGTGTCGAAAACAGAATCTACTGCTAGATGCTGAAGTGAA
GTTGAAAGTCACCACAAAGCCGCACCGCCCAACGCGGTGCAGTACACCTC
TAAAAGTTCAGTCAGAAGTTATTTTGTATCTTCGACGCGTGAGGCTTTTG
AAGGACAGACCACAACGAATACCATGAGGTTGGCTTTGCAAGAGGCTAGA
TCAGACAGATATCAAGTTCTGCCCCATCCTCCCTTTTTTTTGCATTTGTT
TAAGTCTACATGGCAGTAGTGTTTACCCATGTGTAGCTGAAATTGTGCAT
CATTATTGGCAGGTAGCTTCTTGCGTAAATCCAACACCGTGATCTTATTT
CATGTGAGTTCTGCGTGGGCAACGATTAAGCACATAGCCAAAGCTTGTGG
AGGATTTTTGTGCTCTTTTGCTCCCCCAACAGGAAATATTGCGAAGATAA
AAAATCGCGATTCCTTACTTGATATATCGGGCGGGTAAAACCTATTATTG
CTGGTCATTTAAATGTAAAGTGTTCTGCTTGCTACCCTCTCGTGCTTATA
CGCTCTCTGTGCGGCCTGTTCCATGATACTTCTCAGATATTCCTCTGCGG
AGTGGTGGGATACGGAATCCTGGAGAGCTTCCTTCGTCAGGTAATCGTTA
GAAGTCAGTAGTTGTAGCCACGAATCGAACACTATGCGCCCTCTCCAGGG
CTACTTGTAGTAGGCCCAATGGATCAGTGGATTAAACCCCCGTCGACACC
CCTAGGCAGGAGGCCACTACAGTAGCTTACCCAACCCAAATCCAGACCTC
TTCGTATTAACCGTCATCATCACGGTGGACTTGGTCGAACGCTAGGGTTG
AAAGTTCTTTTGGTTCATGGTTCACGCTTCGCGGTGCCTCAACGTGAGTA
GGACCAACGCTGGAAATAACCCGAACATTAACCGCCATCCCCTAGGTACA
GTGTGCGTTGGCAGAGCTAAAATGGCCGCCGCCAGGCGCCGATTTGGGCA
AAAACTGTTTAGGGCATAACTCAGAACGTCGGAGACCATAATGTTTGATA
ATGTTTTGGGTACACCATTCTGCTGAGGTAGTGTACCTCAACCATCATGT
TCGACTGGAAGCGGTGGAACACTACTGCGCTAGCACATCAAGTATTTGAT
GAAATAGCTATCAGATGAACATCCGCCTCTGCCAGTTGATCCAGGGACTA
ATTTTGAGTTCTAGGCGATGGCGTGTCAGTGGAGGTGTCGACTTGTAATG
TCATGTGTTGAGCTTCTCTTCACTCACGCCGGCGTCCATTGTGCAGCAGG
GACAAAATAACTACTAGATAGATGTACCAACCTTGATTCCGTAGCCTCAT
CAGCACGGTACCGTGTCAAGGAGTGAAATGGTGAGGATAATTTCACGAGG
CTTCTTCGTGGGGCAATTGGGGGGGACTATTGGGCCCATATGCCCGTGTT
GCTTGTTGCTGGATTCGGATTCGTTTTTGCTGTACTTTACTGTAGCACTC
GAGGGGTTTGTGGAGGTTCTTATTGCTCGAATGTGCCACACTCGTCCCGT
GCGTGTCATGTTAATGCCCAGGGTCATGTCGATGACGATGAACGAGGTGC
TGAGCTGTGTATTTTACAGAACTTCAGCACACTGCACTCGCATGCTGTGT
TCTTGCTCGCGCCATGTTGAGCTACAGGAGAAGTTGTATTTATCCATCCC
TGCCCCTACATGTACCCACCCCTGATAAATCTAAACCCTATTGTTTCACA
GATAAAACAATGTGCCCTAATCTAAATGCATCTGTTAGAAATTGCTCTAG
AGGACCGTACATATGACCAATGGGTTTAATCCTGGACACCTCGTCACCCC
CGGGACCACAAACGTACATGTATGCACACACTTTGGCACAATGTGCAAGA
TACACTCTCATGTCGCCAAACGTCCTCTATTATCTGTCGATTTTAAAAGA
AAGAGAAAGAAAGTCTAAAGAGAACATGCAACAGCTACTACAAAAAAGCA
GACCATCCCTCGTAACGATGGTTAGTTATGATCGTGGTCTTTTATGGTTC
AAAAAGGTCATTTTCCAAGAATATGCCGCGGTCAGGACATGGAATATTGG
ATAAGAAAACAGAATATCCCAGTAAAACGAAATAGAGACATGATCTTATT
CGTCTGTATATATTCCATCTGATTTATCCTGCCGGACGTGTGACATGCGC
ATTTACATGCATATAGGTGGACACATACTTCTCCCGAGCGCTCATCGATG
CCTCGAAGGTAGACACCCTCGCCAATGTCCAGGGAATGAAACCTACAAAT
TCAACACCGGCTACCCGCGTAGATCCTCCTCCGGCCACTACCAGCCCTAT
TTGTCCCTCGGACAGCGATCCTGACAAGAATTTTTGTGAAGCTACCACTA
CTGCTACGGCAACGATGGGGCGATCCGCTAACGGGGGGCAACGATCGGGG
GGCGCAGATGCAGCGGAGCGGCCGGGACAGCGCGCGCTGTTATGGCTGCG
AAAAAAAATGGAAGTGGATTTTAACTGTGTGTTTGAGCGCCTGCCAGACG
GGATATTGCCCACGCGGTCAGAGCCGAGCGGCGAGGATGGCGGGGACGGC
GGAGTGTAGATGATGACCGTAGGGGCGGGATTGGGAAAATAAGGCTGGTT
TTCACGTGTATGGTACTGTCATGTTGTTGCTTGAAACGAATTTTTGTGAA
GAGATTAAGGATGAATAATGGGCATGTTGTGAGGTTGATTTACACACATT
ACGCGTATCGTATGTATGTATTAATATATGTAAGGAGCGGACAGCAGCAT
ATTGTATTTTGTTTTT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2105:11213..19928+

>mRNA_H-paniculata_contig2105.5502.1 ID=mRNA_H-paniculata_contig2105.5502.1|Name=mRNA_H-paniculata_contig2105.5502.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1842bp|location=Sequence derived from alignment at H-paniculata_contig2105:11213..19928+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGGAGCTGAAATACTCTTTCCAGGATCCGGTAGGTGTTATCCGCAT
AACGGAGGATTGGTCCGGGGAAGGAAACGGAATTGCGGGGCTACAGTGGC
TTGGTGGGGTCTTCCTGAGATGTGGGAGCTGAAATACTCTTTCCAGGATC
CGGTAGGTGTTATCCGCATAACGGAGGATTGGTCCGGGGAAGGAAACGGA
ATTGCGGGGCTACAGTGGCTTGGTGGGGTCTTCCTGAGCCGTTACATGGA
TAGTAGACAGGTCTTCCCAGAAGATTTCTTTGTGGGGCAGCGAATAATTG
AGGTGGGAGCGGGCTGTGGACTAACCAGTATCTACTTGGCAATACGAGGA
GCAGAAGTCACCATAACTGACATGGATATCGCCGTTACATGGATAGTAGA
CAGGTCTTCCCAGAAGATTTCTTTGTGGGGCAGCGAATAATTGAGGTGGG
AGCGGGCTGTGGACTAACCAGTATCTACTTGGCAATACGAGGAGCAGAAG
TCACCATAACTGACATGGATATCGATAAATGCCTGGGCAATGTGGAGACA
AATCTGGCTCCCCGGGGGTTGACTGGGAATGTTTGCGTACGGCGCTTAAA
GTGGGGGTCGGCGGAAGACCTATCCTCGTTCAACCCCCCGTACGACGTGG
TGGTTGCGGGCGATTGTCTGTACGAAGAGGCGTGTATTACGCCGCTCCTC
GAGACCATGTGGGAGCTGGCTGGGCCGGATACGGATATAAATGCCTGGGC
AATGTGGAGACAAATCTGGCTCCCCGGGGGTTGACTGGGAATGTTTGCGT
ACGGCGCTTAAAGTGGGGGTCGGCGGAAGACCTATCCTCGTTCAACCCCC
CGTACGACGTGGTGGTTGCGGGCGATTGTCTGTACGAAGAGGCGTGTATT
ACGCCGCTCCTCGAGACCATGTGGGAGCTGGCTGGGCCGGATACGGATAT
ATTCCTCTGCGGAGTGGTGGGATACGGAATCCTGGAGAGCTTCCTTCGTC
AGATATTCCTCTGCGGAGTGGTGGGATACGGAATCCTGGAGAGCTTCCTT
CGTCAGGTGGACACATACTTCTCCCGAGCGCTCATCGATGCCTCGAAGGT
AGACACCCTCGCCAATGTCCAGGGAATGAAACCTACAAATTCAACACCGG
CTACCCGCGTAGATCCTCCTCCGGCCACTACCAGCCCTATTTGTCCCTCG
GACAGCGATCCTGACAAGAATTTTTGTGAAGCTACCACTACTGCTACGGC
AACGATGGGGCGATCCGCTAACGGGGGGCAACGATCGGGGGGCGCAGATG
CAGCGGAGCGGCCGGGACAGCGCGCGCTGTTATGGCTGCGAAAAAAAATG
GAAGTGGATTTTAACTGTGTGTTTGAGCGCCTGCCAGACGGGATATTGCC
CACGCGGTCAGAGCCGAGCGGCGAGGATGGCGGGGACGGCGGAGTGTAGG
TGGACACATACTTCTCCCGAGCGCTCATCGATGCCTCGAAGGTAGACACC
CTCGCCAATGTCCAGGGAATGAAACCTACAAATTCAACACCGGCTACCCG
CGTAGATCCTCCTCCGGCCACTACCAGCCCTATTTGTCCCTCGGACAGCG
ATCCTGACAAGAATTTTTGTGAAGCTACCACTACTGCTACGGCAACGATG
GGGCGATCCGCTAACGGGGGGCAACGATCGGGGGGCGCAGATGCAGCGGA
GCGGCCGGGACAGCGCGCGCTGTTATGGCTGCGAAAAAAAATGGAAGTGG
ATTTTAACTGTGTGTTTGAGCGCCTGCCAGACGGGATATTGCCCACGCGG
TCAGAGCCGAGCGGCGAGGATGGCGGGGACGGCGGAGTGTAG
back to top