mRNA_H-paniculata_contig21043.5501.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21043.5501.1
Unique NamemRNA_H-paniculata_contig21043.5501.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig21043.5501.1 vs. uniprot
Match: D7FRP9_ECTSI (Alpha-type protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRP9_ECTSI)

HSP 1 Score: 228 bits (580), Expect = 5.050e-69
Identity = 107/181 (59.12%), Postives = 136/181 (75.14%), Query Frame = 1 
Query:   22 YIGRIERGLELEDVEEAQWNNTNEGQFYCDKLALEGGTIVVQARDLVVRLRHRPFAQGGMRHCFRMWDLGALGASNKLVDLVAKRSKYVMPMRDELKGLQHDLRCHKLAMEQAKVFNGRVTGFARGPKASNPMYAALKRRPSGFQVAKCDVYRLEDAVEACGFRYLLVEPFLDGKYIKVTG 564
            Y  R+ + L LEDVEEA WN+TN+  +YCDKL L+G  + VQ RDL+VR+R RPFA GGMRHCFRMW+LGA G S K+ +LV K+SK+ + +  +++GL+ +L CH+LA +QA +FN RVT FA G  A  P YAAL+ +P G QVA+CDVYRLED  E  GFRYLLVEPFL+GKY+K  G
Sbjct:  212 YSTRVPKPLALEDVEEAVWNHTNQDTYYCDKLYLQGSALEVQERDLMVRIRERPFAVGGMRHCFRMWNLGAGGRSRKVNNLVGKQSKFSVSVAQQVRGLKQELLCHRLARQQATLFNSRVTSFAAGQVAKTPPYAALRSKPWGLQVAECDVYRLEDPCEPGGFRYLLVEPFLEGKYLKYNG 392
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BLAST of mRNA_H-paniculata_contig21043.5501.1 vs. uniprot
Match: A0A7S2H228_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H228_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 4.230e-8
Identity = 47/131 (35.88%), Postives = 62/131 (47.33%), Query Frame = 1 
Query:  163 VRLRHRPFAQGGMRHCFRMWDLGALGASNKLVDLVAKRSKYVMPMRDELKGLQHDLRCHKLAMEQAKVFNGRVTGFARGPKASNPMYAALKRRPSGFQVAKCDVYRLEDAVEACGFRYLLVEPFLDGKYIK 555
            V+LR +PFAQGG R+ + M       A N  V +VAK S+Y +P  + LK      RC   A + A+ +N       + P      Y             K DV+RL D     G+RYL VEP+LDG Y K
Sbjct:   28 VKLRRQPFAQGGFRNVYVMI------ADN--VKMVAKESRYEVPYSERLKFHIDSSRCMARASKLAQRYN-----LFKPPHLPTVEYL------------KGDVWRLNDPSSPGGYRYLAVEPWLDGPYAK 133
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21043.5501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FRP9_ECTSI5.050e-6959.12Alpha-type protein kinase domain-containing protei... [more]
A0A7S2H228_9STRA4.230e-835.88Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21043contigH-paniculata_contig21043:155..4386 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score229.9
Seed ortholog evalue9.5e-58
Seed eggNOG ortholog2880.D7FRP9
KEGG koko:K08292
KEGG Pathwayko04152,ko04921,map04152,map04921
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000278,GO:0000281,GO:0000331,GO:0000910,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005516,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0006970,GO:0006971,GO:0006996,GO:0007010,GO:0007033,GO:0007049,GO:0008144,GO:0008150,GO:0008152,GO:0009628,GO:0009653,GO:0009987,GO:0016043,GO:0016050,GO:0016192,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018107,GO:0018193,GO:0018209,GO:0018210,GO:0019538,GO:0022402,GO:0030029,GO:0030036,GO:0030554,GO:0030587,GO:0031033,GO:0031038,GO:0031156,GO:0031288,GO:0031410,GO:0031982,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032940,GO:0033298,GO:0035639,GO:0036094,GO:0036211,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043900,GO:0043933,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045055,GO:0046903,GO:0048471,GO:0048856,GO:0050789,GO:0050793,GO:0050896,GO:0051179,GO:0051234,GO:0051301,GO:0051703,GO:0051704,GO:0061640,GO:0065007,GO:0070177,GO:0071704,GO:0071840,GO:0090702,GO:0097159,GO:0097367,GO:0097708,GO:0099120,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1903047
EggNOG free text desc.elongation factor-2 kinase activity
EggNOG OGs28NQ8@1,2QVA3@2759
Ec32 ortholog descriptionvon Willebrand factor, type A
Ec32 orthologEc-00_003380.1
EC2.7.11.20
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Exons4
Model size564
Cds size564
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21043.5501.1prot_H-paniculata_contig21043.5501.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21043 155..4386 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929557.338664-CDS-H-paniculata_contig21043:154..2801622929557.338664-CDS-H-paniculata_contig21043:154..280Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21043 155..280 +
1691480912.6871371-CDS-H-paniculata_contig21043:154..2801691480912.6871371-CDS-H-paniculata_contig21043:154..280Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21043 155..280 +
1622929557.3543453-CDS-H-paniculata_contig21043:2049..22041622929557.3543453-CDS-H-paniculata_contig21043:2049..2204Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21043 2050..2204 +
1691480912.7023675-CDS-H-paniculata_contig21043:2049..22041691480912.7023675-CDS-H-paniculata_contig21043:2049..2204Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21043 2050..2204 +
1622929557.3664906-CDS-H-paniculata_contig21043:3857..40321622929557.3664906-CDS-H-paniculata_contig21043:3857..4032Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21043 3858..4032 +
1691480912.715895-CDS-H-paniculata_contig21043:3857..40321691480912.715895-CDS-H-paniculata_contig21043:3857..4032Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21043 3858..4032 +
1622929557.3802898-CDS-H-paniculata_contig21043:4278..43861622929557.3802898-CDS-H-paniculata_contig21043:4278..4386Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21043 4279..4386 +
1691480912.7268999-CDS-H-paniculata_contig21043:4278..43861691480912.7268999-CDS-H-paniculata_contig21043:4278..4386Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21043 4279..4386 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21043.5501.1

>prot_H-paniculata_contig21043.5501.1 ID=prot_H-paniculata_contig21043.5501.1|Name=mRNA_H-paniculata_contig21043.5501.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=188bp
MDTDAVFYIGRIERGLELEDVEEAQWNNTNEGQFYCDKLALEGGTIVVQA
RDLVVRLRHRPFAQGGMRHCFRMWDLGALGASNKLVDLVAKRSKYVMPMR
DELKGLQHDLRCHKLAMEQAKVFNGRVTGFARGPKASNPMYAALKRRPSG
FQVAKCDVYRLEDAVEACGFRYLLVEPFLDGKYIKVTG
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mRNA from alignment at H-paniculata_contig21043:155..4386+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21043.5501.1 ID=mRNA_H-paniculata_contig21043.5501.1|Name=mRNA_H-paniculata_contig21043.5501.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4232bp|location=Sequence derived from alignment at H-paniculata_contig21043:155..4386+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATACGGATGCTGTGTTTTACATCGGTAGGATTGAGCGTGGGTTGGA
ATTGGAGGACGTGGAGGAAGCGCAGTGGAATAATACCAATGAGGGCCAGT
TTTACTGCGACAAGCTTGCCTTGGAGGTGCCAATGTTGTGTGTGTTCTGT
CTTTTTTTTGTTTTTATGTTGTTATAAGTTTTTCTTTTTTCGTCGTCTAT
TTTTCTATTACCTACCCCCCCCCCCACATTTTTTTTGCCAGTGAGCAATG
TAGGAACTCGATGTTTTTTTTTTGTTTTTTTTTAGTGTTACTGAGGATCT
GAATGGACGGCCGCACGGAATCGAAAAAAAATGACAAAGACGAAAATAAA
AAAAAAAGTCGGAACGACAGCAAGGAACAAAAGTTTGTAGCAACCTCTTA
GATTATGCTGGGCATTGTTTCAGTGCAGTGCGGAGTTCTGGGCAGACTGC
GAGCGTTGCGGGAAGTGGGATAGTGTACAGTGAATCTGTATCACACGACG
GCACCGGCGAGGGTCGGTCCATCAGGCGTCTGTATTACGCCATGGTCTTT
CGTCCTCCGAAGGACTGACTGCCTTTGGATTGCTTTGCACCTGGTCCGTT
CTCACTCATGAACCCTGACTACAGACGAGCGAGTGGTCCGCGCAGGCTGC
AGCACGATTGTTCGGTTTGACACAGCCCGTTATCAGCTTTTACAGGTAGT
AAGAGACATTCAAACTGTTGAAAAAGATCGCGCGTCTGAGTTCTCCGGAG
ATTGAGGGGTTTATCAGAGATTTGGTTGGAAAACCCCCCCCCAAAAAAAC
GGTTCTCCAAGACTATTATTCTGGTGCGGGTTCTGCGTACCTTGTGACGT
TTGCTGTGGTACGGCCGGCTCCCGAGATGGCGAACAGGTATGTATTTGTA
TGTGGTGAGAGCCACCCCAGTTTTTTCCAACGGATCTCTATCAGATTTTT
TAGTGTAGCTTAGGTGGGAGCAAAAGATATTTTCTCGCTAGAGAATTATG
GATACGTTAGTGAAATACCACCTCAAGATTTTTTTGGTTTACTTACTGTT
TTTTGAGGATAGTGCTTGCTGGGTAATTTGACTGGGGCGGTCGCCTCCTA
AAGAGTAACGGAGGCATGCAAAGGTAGATTCATCCCCTTCTGAGGGGAAT
AGAGTATAATGGCTAAAGTCTGTCTGACTGGAAGAAAAACATTTCGAACA
GAGACGTAAGTCGGCCGTAATGATCCGGTAGTTCTGCGTGGAAGGGCTAT
CGCGCAATGGATAAAAGGTACGCCGGGGATAACAGGCTAAATGATTCTCA
CGATCCGCGATGATTATGATAATAAATTCATGAACACAAAAAAACAAGCT
TGAATAAAAACGACGAAAATAAATAAATAAATCTTTTGGCGCAAAAAAAG
CAGGTCTTGGGTAGTAGTAGTAGTAAGTTAGGACCTCGGAAGTCCGGGTT
GAAATAACCATCCCCTTTAACCCTTGGAGGCGCAAGCAAAGTAAGGCGCG
AATCAACCACTGTTGCTCTTTCAGCGGGGTGCAAAATAATAACAAATAAC
GATGAAATCAACCAGCTAAACTATACTCTCTTCTCAGACAGAGACTATAG
ATGACCCCACCTGCTGTACAAACGCGTCTGCTGCTCTGCTATTGTCCAGC
ATTCAACACCCTGTTTTACATGGAACAAACATGGACGCAAGAACAGATCC
CAGAAGACAGATTTTCGAGATATGAATGAGCTCCCGGGAGGTTCAATAAG
AAAACATTCTCAGCAAACGTACGTACCACAATGCAAATTTTGCATGGTAG
ACGAGGGCGCCACGTATTCCTCGCTATCTTGCTATACCTAGTGATGCTGC
TGGTTCTGCTGATTGTGTGCCATTTCATTTTTGCGGCTGTGGCAGGGTGG
GACCATCGTCGTCCAAGCTAGAGACCTAGTTGTCAGACTACGTCACCGGC
CTTTTGCGCAGGGTGGCATGAGGCACTGCTTCCGGATGTGGGACTTGGGC
GCTCTGGGCGCATCGAATAAGCTGGTTGACCTCGTAGCGAAGAGGAGCAA
GTGAGTTAAGAGAGTTGGTTAGGTAGTTAATTAACTAGTATACAAAAGCA
ATTTTGGGGGCGTTACCTGAGCAGTGGTACTGTCGGTTTTTGGCAAGACG
TTGATAGCTTGCAACTCTCCTAATAAAGTCTGATTTATTCGATGTTGATG
GAAGATGTTCGGGTTTAAATCTTTGTTGATTGGTATGGCAGTGGCAGTGG
CAGTGGCAGTTTGGGTTGTTTGTTTGCTGTACCTATTTAGCTTCTTATTG
AAGCCTTTCGTGTCATTTCGAGGGATTTGGTTTCGAATTGGTGGAAAAAA
GTCACGATTTCTTAGGCGGGAGCTATCATGGAGCGAACTTTTACTCCCGA
AGGTATGTTTCATGTATGTCCTCATGTTGTTTTATCTCTTGAAACATTTG
GTGTCGAATTGGCAAATGATTTTCGCAAATTGGAGAGGGCAAAAGAACAC
AGTAAGGCCCTCGAGATGGGGTAGTTGGTGAAGAGCTGTCCAGTCAAACA
GAGAAACCAAGCATTGAGCGAAAATGACGAAAGAGAAGGATTTAATCTTG
GAAGAGAAAGGTTTGACCGCATGTTACTGTCATGATCCATTTTTGTTGTA
TGTTATTGTTTGTTACTGTTGTATGTTGCTGAACGGACAACATCGGTGAA
AGACAAACGATGGCACGTAGTTCGAGCAGTGCCCGTGACATGCGTGGGGA
TGGTACACCCAGAGTAAATAGCCGAGATCTTGTGTGAAGCTGATGATCTC
TGCTCTCTGACGATGCTGGGTTTTTTGCCTTCGATGCAAGTGCCGAGTGT
TGTCTGGATTCAAACCCCATTTGGACACGAAACGACCTCTTCCAAATCGT
ATTCTCTCTTGTAGATTTGGCTGAACTGCTTCCTCTCTGTTTTTTTTATT
CCCAATGTACTCTGGAATATGACGTTTGTTCCATTAGTCATTTATTCACT
TGTTTCATTTTGTTCTTCACACTACATTCACTGCCGTTGGCGAGACAATG
GAAACTTGAAGTAGGACAGGCCCTTTTTTTTTCCTTTTTTTTTCTTGTTC
ACTGAAGCTGCGCGTTGGAAAATCAGATACTACGGAGTCACTCGAGACAA
ATTCTTTGGTTTCGAAATTTGATTCTTTTCGTTGTGCGCCCCCCTGCCCG
CTTGGTCGATTTTGTTTGATTTCTCCAAGGAGTGGAAACGACCAAGTGCG
TCTTTCCCAGTATACTAGTGTCCCTGATGTCTGGGTCCAGTGCGTATTGT
GCTCAGTGTACTACTGTTCTTCGAGTTTGTTGAAAACGTGGAAGGAAAAC
ACGAGGAAACAAACACACATACTCTACGTCTAATGCCGACCTGAGAAATC
AAGGAAGAAATAAGACCTACATGATTTCACGATTTAATCAATTATGAAGG
ACATCGGAAAAGCCGCTGCCGTCCAGGACATCCGATCCAGTACAGACAGT
AAGCAGTACGTGCAGGACACACAGGAGCGTTGGCACGAGTCAGCGTGCAC
ACACACATACACACACAGCGACCGACTTGCTGCGCTCCACTGTGGTGTCA
TTATCCATTTTTGTTCCAAGAGTCTTCGGCGCGCAAAGGCTTGATATAAA
AAAGAACTATTTGATTATACCAACACAAAAATATTACGTATTGCATGAAA
CAGATATGTCATGCCCATGAGAGACGAGCTGAAGGGCCTACAGCACGACC
TCCGCTGCCACAAATTGGCAATGGAGCAGGCCAAAGTGTTCAACGGGCGC
GTCACCGGATTCGCGAGGGGTCCCAAGGCCAGCAACCCAATGTATGCAGC
GCTGAAGCGGCGCCCTTCAGGTTTCCAGGTACGATCAAAGCCGAAGCCAG
GAGGTTAGCTTCCGCTGGGGGGGGGCGGGGGAGGGAGACAAGAGATGGCA
GGCAGCACTGAGAGACGTATTGACATGATCACCCTGAAACCATCGATGCA
TTTATCTAATGAATTTCCAACACACATACACACACACACACACACACACA
CACGCCTACTCCTACTCTTACTCCTATTCCCACTCTACGAAACGGTCTGT
AACACTCTTCATTCCCATGTTCAGGTGGCGAAGTGCGATGTCTATCGTCT
GGAGGATGCCGTAGAGGCCTGTGGCTTCCGCTACTTGCTGGTGGAGCCGT
TCTTGGACGGAAAATATATCAAGGTAACGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig21043:155..4386+

>mRNA_H-paniculata_contig21043.5501.1 ID=mRNA_H-paniculata_contig21043.5501.1|Name=mRNA_H-paniculata_contig21043.5501.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1128bp|location=Sequence derived from alignment at H-paniculata_contig21043:155..4386+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATACGGATGCTGTGTTTTACATCGGTAGGATTGAGCGTGGGTTGGA
ATTGGAGGACGTGGAGGAAGCGCAGTGGAATAATACCAATGAGGGCCAGT
TTTACTGCGACAAGCTTGCCTTGGAGATGGATACGGATGCTGTGTTTTAC
ATCGGTAGGATTGAGCGTGGGTTGGAATTGGAGGACGTGGAGGAAGCGCA
GTGGAATAATACCAATGAGGGCCAGTTTTACTGCGACAAGCTTGCCTTGG
AGGGTGGGACCATCGTCGTCCAAGCTAGAGACCTAGTTGTCAGACTACGT
CACCGGCCTTTTGCGCAGGGTGGCATGAGGCACTGCTTCCGGATGTGGGA
CTTGGGCGCTCTGGGCGCATCGAATAAGCTGGTTGACCTCGTAGCGAAGA
GGAGCAAGGTGGGACCATCGTCGTCCAAGCTAGAGACCTAGTTGTCAGAC
TACGTCACCGGCCTTTTGCGCAGGGTGGCATGAGGCACTGCTTCCGGATG
TGGGACTTGGGCGCTCTGGGCGCATCGAATAAGCTGGTTGACCTCGTAGC
GAAGAGGAGCAAATATGTCATGCCCATGAGAGACGAGCTGAAGGGCCTAC
AGCACGACCTCCGCTGCCACAAATTGGCAATGGAGCAGGCCAAAGTGTTC
AACGGGCGCGTCACCGGATTCGCGAGGGGTCCCAAGGCCAGCAACCCAAT
GTATGCAGCGCTGAAGCGGCGCCCTTCAGGTTTCCAGATATGTCATGCCC
ATGAGAGACGAGCTGAAGGGCCTACAGCACGACCTCCGCTGCCACAAATT
GGCAATGGAGCAGGCCAAAGTGTTCAACGGGCGCGTCACCGGATTCGCGA
GGGGTCCCAAGGCCAGCAACCCAATGTATGCAGCGCTGAAGCGGCGCCCT
TCAGGTTTCCAGGTGGCGAAGTGCGATGTCTATCGTCTGGAGGATGCCGT
AGAGGCCTGTGGCTTCCGCTACTTGCTGGTGGAGCCGTTCTTGGACGGAA
AATATATCAAGGTAACGGGGGTGGCGAAGTGCGATGTCTATCGTCTGGAG
GATGCCGTAGAGGCCTGTGGCTTCCGCTACTTGCTGGTGGAGCCGTTCTT
GGACGGAAAATATATCAAGGTAACGGGG
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