mRNA_H-paniculata_contig21040.5500.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21040.5500.1
Unique NamemRNA_H-paniculata_contig21040.5500.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig21040.5500.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.550e-18
Identity = 47/92 (51.09%), Postives = 63/92 (68.48%), Query Frame = 1 
Query:   88 SPPDDDPNFSVLNYWKPRATDGLDAS-GRVVTPARWPHVGLIARLYAGIDTTSCQAERNFSALKLVVSDLRARMSSDRVEQPVFLRLNRHLI 360
            +P  D   F+VL YW  R TD + A+ G+V +PA  P++  IARLY GI+ TSCQAERNFSAL  ++  LR  M   +VE+ +F+RLNRHL+
Sbjct:  520 NPQLDVDGFNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLV 611
[Close]
BLAST of mRNA_H-paniculata_contig21040.5500.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.750e-18
Identity = 47/92 (51.09%), Postives = 63/92 (68.48%), Query Frame = 1 
Query:   88 SPPDDDPNFSVLNYWKPRATDGLDAS-GRVVTPARWPHVGLIARLYAGIDTTSCQAERNFSALKLVVSDLRARMSSDRVEQPVFLRLNRHLI 360
            +P  D   F+VL YW  R TD + A+ G+V +PA  P++  IARLY GI+ TSCQAERNFSAL  ++  LR  M   +VE+ +F+RLNRHL+
Sbjct:  715 NPQLDVDGFNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLV 806
[Close]
BLAST of mRNA_H-paniculata_contig21040.5500.1 vs. uniprot
Match: A0A6H5KJT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT6_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 9.460e-17
Identity = 41/85 (48.24%), Postives = 59/85 (69.41%), Query Frame = 1 
Query:  109 NFSVLNYWKPRATDGL-DASGRVVTPARWPHVGLIARLYAGIDTTSCQAERNFSALKLVVSDLRARMSSDRVEQPVFLRLNRHLI 360
            +F+VL +W  R TD +   +G V +PA  P++  IARL+ GI+ +SCQAERNFSAL  ++  LR  M S +VE+ + +RLNRHL+
Sbjct:  145 DFNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLNRHLV 229
[Close]
BLAST of mRNA_H-paniculata_contig21040.5500.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 2.500e-16
Identity = 44/91 (48.35%), Postives = 63/91 (69.23%), Query Frame = 1 
Query:   91 PPDDDPNFSVLNYWKPRATDGLDAS-GRVVTPARWPHVGLIARLYAGIDTTSCQAERNFSALKLVVSDLRARMSSDRVEQPVFLRLNRHLI 360
            P  D  +F++L +W  R TD + A+ G+V +PA  P++  IARL+ GI+ TSCQAERNFSAL  ++ DL   M S RVE+ + +RLN+HL+
Sbjct:  517 PQVDVDDFNLLGFWNRRGTDSVSAATGKVTSPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGDLCCNMLSHRVERMMLVRLNKHLL 607
[Close]
BLAST of mRNA_H-paniculata_contig21040.5500.1 vs. uniprot
Match: A0A6H5L7P7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7P7_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 3.730e-16
Identity = 42/87 (48.28%), Postives = 59/87 (67.82%), Query Frame = 1 
Query:   91 PPDDDPNFSVLNYWKPRATDGLDAS-GRVVTPARWPHVGLIARLYAGIDTTSCQAERNFSALKLVVSDLRARMSSDRVEQPVFLRLN 348
            P  D  +F++L +W  R TD + A+ G+V +PA  P++  IARL+ GI+ TSCQAERNFSAL  ++ D R  M S RVE+ + +RLN
Sbjct:  134 PQVDVDDFNLLGFWNRRGTDSVSAATGKVTSPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGDFRCNMLSHRVERMMLVRLN 220
[Close]
BLAST of mRNA_H-paniculata_contig21040.5500.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 9.210e-16
Identity = 41/85 (48.24%), Postives = 59/85 (69.41%), Query Frame = 1 
Query:  109 NFSVLNYWKPRATDGL-DASGRVVTPARWPHVGLIARLYAGIDTTSCQAERNFSALKLVVSDLRARMSSDRVEQPVFLRLNRHLI 360
            +F+VL +W  R TD +   +G V +PA  P++  IARL+ GI+ +SCQAERNFSAL  ++  LR  M S +VE+ + +RLNRHL+
Sbjct:  710 DFNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLNRHLV 794
[Close]
BLAST of mRNA_H-paniculata_contig21040.5500.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 3.440e-14
Identity = 40/91 (43.96%), Postives = 60/91 (65.93%), Query Frame = 1 
Query:   91 PPDDDPNFSVLNYWKPRATDGL-DASGRVVTPARWPHVGLIARLYAGIDTTSCQAERNFSALKLVVSDLRARMSSDRVEQPVFLRLNRHLI 360
            P  D   F+++ +W  R T+ +   +G+V  PA  P++  IARL+ GI+ TSCQAERNFSAL  ++  LR  M + +VE+ + +RLNRHL+
Sbjct:  399 PQVDVDGFNLVGFWNRRGTNSVCPTTGKVTAPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGTLRCNMLARKVERMMLIRLNRHLL 489
[Close]
BLAST of mRNA_H-paniculata_contig21040.5500.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 3.520e-14
Identity = 39/84 (46.43%), Postives = 59/84 (70.24%), Query Frame = 1 
Query:  112 FSVLNYWKPRATDGLDAS-GRVVTPARWPHVGLIARLYAGIDTTSCQAERNFSALKLVVSDLRARMSSDRVEQPVFLRLNRHLI 360
            F+++ +W  R TD + A+ G+V +PA  P++  IARL+ GI+ TSCQAERNFSAL  ++ +LR  M   RVE+ + +RLNR ++
Sbjct:  420 FNLIGFWNRRGTDSVRAATGQVTSPADMPYLAFIARLHLGIEATSCQAERNFSALAHLIGNLRCNMLPHRVERMMLIRLNRRML 503
[Close]
BLAST of mRNA_H-paniculata_contig21040.5500.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 1.090e-13
Identity = 43/91 (47.25%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:   91 PPDDDPNFSVLNYWKPRATDGLDASGRVVTPARWPHVGLIARLYAGIDTTSCQAERNFSALKLVVSDLRARMSSDRVEQPVFLRLNRHLIP 363
            P +++ +FS+L +W+ R+     A    V P   PH+ LIARL+ GI++TSCQAERNFSAL  ++  LR+ M   +VE+ +FLRLNR  IP
Sbjct:  379 PAEEEYDFSLLEFWQRRSKPRTCAETGEVEPGL-PHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIP 468
[Close]
BLAST of mRNA_H-paniculata_contig21040.5500.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 1.430e-13
Identity = 43/91 (47.25%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:   91 PPDDDPNFSVLNYWKPRATDGLDASGRVVTPARWPHVGLIARLYAGIDTTSCQAERNFSALKLVVSDLRARMSSDRVEQPVFLRLNRHLIP 363
            P +++ +FS+L +W+ R+     A    V P   PH+ LIARL+ GI++TSCQAERNFSAL  ++  LR+ M   +VE+ +FLRLNR  IP
Sbjct:  707 PAEEEYDFSLLEFWQRRSKPRTCAETGEVEPGL-PHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIP 796
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21040.5500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5JTB8_9PHAE1.550e-1851.09Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE1.750e-1851.09Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5KJT6_9PHAE9.460e-1748.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQI6_9PHAE2.500e-1648.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7P7_9PHAE3.730e-1648.28Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JRT6_9PHAE9.210e-1648.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDJ6_9PHAE3.440e-1443.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXV5_9PHAE3.520e-1446.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAN7_9PHAE1.090e-1347.25Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE1.430e-1347.25Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21040contigH-paniculata_contig21040:867..1855 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size951
Cds size429
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21040.5500.1prot_H-paniculata_contig21040.5500.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21040 867..1335 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929557.2547631-CDS-H-paniculata_contig21040:866..12801622929557.2547631-CDS-H-paniculata_contig21040:866..1280Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21040 867..1280 +
1691480912.6520672-CDS-H-paniculata_contig21040:866..12801691480912.6520672-CDS-H-paniculata_contig21040:866..1280Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21040 867..1280 +
1622929557.2735748-CDS-H-paniculata_contig21040:1320..13351622929557.2735748-CDS-H-paniculata_contig21040:1320..1335Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21040 1321..1335 +
1691480912.6626086-CDS-H-paniculata_contig21040:1320..13351691480912.6626086-CDS-H-paniculata_contig21040:1320..1335Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21040 1321..1335 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929557.2871408-UTR-H-paniculata_contig21040:1335..18551622929557.2871408-UTR-H-paniculata_contig21040:1335..1855Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21040 1336..1855 +
1691480912.6756456-UTR-H-paniculata_contig21040:1335..18551691480912.6756456-UTR-H-paniculata_contig21040:1335..1855Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21040 1336..1855 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21040.5500.1

>prot_H-paniculata_contig21040.5500.1 ID=prot_H-paniculata_contig21040.5500.1|Name=mRNA_H-paniculata_contig21040.5500.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=143bp
RPENDDISGEAETREEACLGGFAEYTKEASPPDDDPNFSVLNYWKPRATD
GLDASGRVVTPARWPHVGLIARLYAGIDTTSCQAERNFSALKLVVSDLRA
RMSSDRVEQPVFLRLNRHLIPGLGKAMKELGNLKRERIQASE*
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mRNA from alignment at H-paniculata_contig21040:867..1855+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21040.5500.1 ID=mRNA_H-paniculata_contig21040.5500.1|Name=mRNA_H-paniculata_contig21040.5500.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=989bp|location=Sequence derived from alignment at H-paniculata_contig21040:867..1855+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGCCGGAGAACGACGACATCAGCGGGGAGGCCGAGACGCGAGAAGAAGC
CTGTCTGGGGGGGTTTGCCGAGTACACGAAGGAGGCATCTCCCCCCGACG
ATGACCCCAACTTTAGCGTCCTCAACTACTGGAAGCCGCGGGCTACTGAT
GGGCTCGACGCGTCAGGGAGAGTTGTCACGCCTGCCCGTTGGCCGCATGT
CGGCTTGATAGCGCGATTGTACGCGGGTATCGATACCACCAGTTGTCAAG
CTGAGAGGAATTTCTCTGCCCTGAAATTGGTAGTTAGCGACCTTCGTGCA
AGAATGTCATCCGATCGGGTTGAGCAGCCAGTTTTCCTCAGGCTCAATAG
GCATCTTATTCCTGGGCTCGGGAAGGCGATGAAGGAGTTAGGAAACTTGA
AACGAGAGCGGATTGAATACATCGAGTTATAACGTTGAAACCATTTGGTG
TAGACAGGCGTCAGAATAGATGATGGGACGTAATCACACACACTGTGTTG
TAGGAAGACGAGATGGATGATGAGGTTGTTTATTTATTTGTTTGTTTATT
TATATATTTTTGTAAGGTAGTCTTCGGTCTCTTGTTCATGTTATCGAGGG
AAACAACTTGGTATATCCGTTTTGGGCACATGGGAGAGGACTCCCGCATG
GTTGCAATGCAATGAACAATAAACGATAAACCAGATTAATATCAATAATA
TTCAGAACCAGGGTTGTCACTGCTTATGTAGTAAAGCGGGCACCCATCCA
TATTCGAACGTTGAGTTATGGCACGTCTCATCTTGTTCACAATGTCCCGC
TCCTCGGCCACACCGCGCCCAGTGTCCCGTTCTCATCCCGTCTTATAGCC
TCTCACAGCTGTATTTGTGCGAGTCCTAAAATTTGTCCCACGTATCAGTC
CCATTCACATCCCATCTAAAAATTGTCTCCCACTTGTCAGTCCCATTCCC
ATCCAAATTGAAATTTGTCTCCCATTTGCCAGTCCCGTT
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Coding sequence (CDS) from alignment at H-paniculata_contig21040:867..1855+

>mRNA_H-paniculata_contig21040.5500.1 ID=mRNA_H-paniculata_contig21040.5500.1|Name=mRNA_H-paniculata_contig21040.5500.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=858bp|location=Sequence derived from alignment at H-paniculata_contig21040:867..1855+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGCCGGAGAACGACGACATCAGCGGGGAGGCCGAGACGCGAGAAGAAGC
CTGTCTGGGGGGGTTTGCCGAGTACACGAAGGAGGCATCTCCCCCCGACG
ATGACCCCAACTTTAGCGTCCTCAACTACTGGAAGCCGCGGGCTACTGAT
GGGCTCGACGCGTCAGGGAGAGTTGTCACGCCTGCCCGTTGGCCGCATGT
CGGCTTGATAGCGCGATTGTACGCGGGTATCGATACCACCAGTTGTCAAG
CTGAGAGGAATTTCTCTGCCCTGAAATTGGTAGTTAGCGACCTTCGTGCA
AGAATGTCATCCGATCGGGTTGAGCAGCCAGTTTTCCTCAGGCTCAATAG
GCATCTTATTCCTGGGCTCGGGAAGGCGATGAAGGAGTTAGGAAACTTGA
AACGAGAGCGGATTCGGCCGGAGAACGACGACATCAGCGGGGAGGCCGAG
ACGCGAGAAGAAGCCTGTCTGGGGGGGTTTGCCGAGTACACGAAGGAGGC
ATCTCCCCCCGACGATGACCCCAACTTTAGCGTCCTCAACTACTGGAAGC
CGCGGGCTACTGATGGGCTCGACGCGTCAGGGAGAGTTGTCACGCCTGCC
CGTTGGCCGCATGTCGGCTTGATAGCGCGATTGTACGCGGGTATCGATAC
CACCAGTTGTCAAGCTGAGAGGAATTTCTCTGCCCTGAAATTGGTAGTTA
GCGACCTTCGTGCAAGAATGTCATCCGATCGGGTTGAGCAGCCAGTTTTC
CTCAGGCTCAATAGGCATCTTATTCCTGGGCTCGGGAAGGCGATGAAGGA
GTTAGGAAACTTGAAACGAGAGCGGATTCAGGCGTCAGAATAGCAGGCGT
CAGAATAG
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