mRNA_H-paniculata_contig2104.5499.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2104.5499.1
Unique NamemRNA_H-paniculata_contig2104.5499.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2104.5499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2104contigH-paniculata_contig2104:12691..15454 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2331
Cds size2331
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929557.046853-CDS-H-paniculata_contig2104:12690..138521622929557.046853-CDS-H-paniculata_contig2104:12690..13852Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2104 12691..13852 +
1691480912.612037-CDS-H-paniculata_contig2104:12690..138521691480912.612037-CDS-H-paniculata_contig2104:12690..13852Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2104 12691..13852 +
1622929557.0639613-CDS-H-paniculata_contig2104:14285..154541622929557.0639613-CDS-H-paniculata_contig2104:14285..15454Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2104 14286..15454 +
1691480912.6212392-CDS-H-paniculata_contig2104:14285..154541691480912.6212392-CDS-H-paniculata_contig2104:14285..15454Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2104 14286..15454 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2104.5499.1prot_H-paniculata_contig2104.5499.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2104 12691..15454 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2104.5499.1

>prot_H-paniculata_contig2104.5499.1 ID=prot_H-paniculata_contig2104.5499.1|Name=mRNA_H-paniculata_contig2104.5499.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=777bp
DGRDAGGSSGSTAADDAVRWLSQIVSDASAEDIEDNNQVAVVQSASATGM
VDPRSGLGPIPATATVLGVAAANNKADRMAERQIANAPRGALVRFFPDWR
ENVRFVCRQNAEDLRDALRGLREALVKEKEKGENQTATRSAKWGYDDRSG
QRLEYTEDSENEWGVAEDDEQEDMGTATHGLDGRRGWRRGGTKARALEFF
ERVIVEILESRSTTNADAGAFTAAATSIAAFDMDSSGQKSTYFVRRAGIG
EHKNDRDGNVYCVEPAAAGKSECAASDGGGVGECRRARHSSLADADIDYD
GAAFKTSELPTLAGGRGDLAEKKILSAGEAIVGGEATDDVVAVTFDRCAF
GASFSVEDFETEAAGKEKEKDQGDGEGAGRDAPRKAKDGGDPVAPAAEES
NGAIVLSGDSGCSAIVTLDLTAAEFPNHDIYLHNGDKDPPDTTADGILDS
YADVDVDADADVALHEAPSPSHADVAAGDASHVVNGGGGGGMSGGSLWHV
DIHGQRSCDVDQAADDLVRDNGNDCNGRDVGVGGDSVGKDGNRDYNCLDC
GCDVCGCAADPQDSDGEVEEIAMPDDDFGYYYDHAFSPEEMSGFATGDEL
FAQNDPAAQEQGPPNPASIHQHPPRSPVTENIVSAVVEANRTHHRRHESP
SPLPREKLTKSKSISTSAATAAAAAEPTNSRERDPVPPYNYFGRVAAGRP
PLTQGALALAKPSRYDDNIEATSTSSLRTAGFARGRSQPVGGGSGELRLY
TLAPARGGVNRVQQGEVGMSRGGGRDG
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mRNA from alignment at H-paniculata_contig2104:12691..15454+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2104.5499.1 ID=mRNA_H-paniculata_contig2104.5499.1|Name=mRNA_H-paniculata_contig2104.5499.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2764bp|location=Sequence derived from alignment at H-paniculata_contig2104:12691..15454+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGGTAGGGATGCGGGTGGTAGTTCCGGCTCAACTGCTGCAGATGATGC
TGTTCGTTGGCTTTCGCAAATTGTATCGGACGCCAGCGCGGAAGACATAG
AAGACAATAATCAAGTTGCGGTGGTGCAGTCGGCATCAGCAACAGGGATG
GTGGATCCGAGATCAGGATTAGGGCCTATACCGGCGACGGCGACAGTATT
AGGAGTGGCGGCCGCCAATAATAAGGCCGACAGGATGGCCGAGCGGCAGA
TAGCAAACGCGCCTCGGGGTGCTCTTGTCCGTTTTTTTCCGGATTGGCGG
GAAAACGTCCGATTCGTGTGTCGGCAGAACGCGGAGGACCTGCGAGACGC
GCTTCGCGGCTTACGTGAGGCACTCGTCAAGGAGAAGGAAAAGGGGGAGA
ATCAGACGGCGACGAGATCGGCGAAATGGGGATACGACGATCGCAGCGGG
CAACGGCTTGAGTACACAGAGGATAGCGAGAACGAGTGGGGGGTGGCGGA
GGACGATGAGCAGGAGGACATGGGTACAGCAACGCATGGGCTCGATGGGC
GTCGTGGGTGGAGAAGAGGAGGTACGAAGGCACGCGCGTTGGAGTTTTTC
GAGAGGGTCATTGTGGAGATCTTGGAGTCGAGGTCTACAACTAATGCTGA
TGCTGGTGCTTTTACTGCGGCTGCTACTTCAATTGCGGCTTTTGACATGG
ACAGCAGTGGACAGAAGTCAACGTATTTTGTCCGTCGTGCTGGCATTGGC
GAGCACAAAAACGATCGGGACGGCAATGTATACTGCGTTGAACCTGCCGC
TGCTGGGAAATCTGAGTGCGCTGCAAGCGACGGCGGTGGCGTTGGCGAAT
GCAGACGGGCCAGGCACAGTAGCCTCGCTGACGCCGACATAGACTACGAC
GGTGCGGCGTTCAAGACAAGTGAATTGCCAACATTGGCAGGAGGACGCGG
AGACCTAGCGGAGAAGAAGATACTGTCGGCTGGGGAGGCTATTGTAGGAG
GAGAAGCAACTGACGATGTGGTTGCGGTTACGTTCGATAGATGCGCGTTC
GGTGCGTCGTTTAGTGTTGAGGATTTCGAGACAGAGGCAGCGGGCAAGGA
GAAAGAGAAGGATCAGGGTGATGGCGAAGGTGCTGGCAGGGATGCCCCCA
GGAAAGCAAAAGGTAAGGCCATTTTTTTTCAAAGGGGTTCCTAACTGTGG
TGTCAAGTTGTTGGGAATGGGAGGGGAATTGGCCCGGAGACCACCTTAGC
CGGCGAAGCGAAAGAACCAAGGGGGGATGATGGACATTTATTGGCTCCAT
GTTGGTACCGCATTCGTTGGTCGGATTTTATGTTTGGCATGCCTTTTTTC
GTACCCATACCACGCTATTGCACAACAGGTCTTGTTGCGCCAAACATTGT
GTAAGGTCTCTTTTTGGTCAAGGGCAGGAATTGCAGTCTAAAATACAGCC
CGTGTGGAACAATGTTCAACATGTTGTAGCATGTTCAACTGGCGAGTGAT
CGGCACATGCGTGTAACACGAATGCCAGGATACAGGAATGGTAATATCCT
TATTATTATTCACGCCGCTTTTTCTTCGTTATGACCGCCATGTAGACGGT
GGGGATCCTGTCGCCCCCGCAGCGGAAGAGAGCAACGGTGCCATAGTTCT
AAGTGGCGACAGCGGCTGCAGTGCAATTGTGACGTTGGATCTCACCGCTG
CGGAATTCCCTAACCACGACATCTACCTTCATAATGGAGATAAAGATCCT
CCAGATACGACCGCCGATGGTATACTCGATAGCTACGCTGATGTTGATGT
TGATGCTGACGCTGATGTTGCGCTGCATGAAGCGCCGTCACCGTCTCACG
CCGATGTTGCTGCCGGTGACGCTAGTCATGTCGTCAATGGCGGCGGCGGC
GGCGGCATGAGCGGAGGGAGTCTGTGGCATGTTGATATTCATGGACAACG
CAGTTGCGATGTAGATCAAGCTGCTGACGACTTGGTGAGGGATAACGGAA
ACGATTGCAACGGCCGTGATGTTGGCGTCGGCGGCGACAGTGTCGGCAAA
GATGGGAACCGGGACTACAACTGCCTTGACTGTGGCTGTGACGTCTGTGG
CTGTGCTGCTGATCCCCAAGATAGCGATGGTGAGGTGGAGGAGATTGCCA
TGCCCGACGACGACTTTGGGTACTACTACGACCACGCCTTCTCGCCGGAA
GAAATGTCGGGGTTTGCCACGGGAGACGAACTTTTTGCCCAAAACGACCC
AGCTGCCCAAGAGCAAGGGCCGCCAAACCCCGCGTCAATCCATCAGCACC
CTCCGCGGTCACCAGTGACGGAAAACATCGTATCGGCTGTTGTCGAGGCT
AACCGGACGCATCATCGTCGGCATGAAAGTCCTTCTCCGTTACCACGGGA
AAAACTGACAAAATCGAAGAGCATATCAACCTCCGCCGCCACCGCTGCCG
CCGCCGCCGAACCTACAAACAGCCGAGAGAGAGATCCCGTCCCCCCCTAC
AACTATTTCGGCCGGGTAGCAGCTGGGCGGCCGCCGTTAACCCAGGGAGC
GCTGGCGCTGGCCAAACCTTCCCGGTATGACGATAACATCGAAGCGACGT
CGACATCGTCTTTGAGGACGGCGGGCTTCGCGCGAGGCCGGTCCCAGCCG
GTCGGGGGGGGCAGTGGGGAGCTGAGACTTTACACGCTTGCGCCCGCAAG
GGGGGGCGTGAATCGGGTGCAGCAAGGTGAAGTGGGTATGTCGAGAGGAG
GTGGTCGTGACGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2104:12691..15454+

>mRNA_H-paniculata_contig2104.5499.1 ID=mRNA_H-paniculata_contig2104.5499.1|Name=mRNA_H-paniculata_contig2104.5499.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4662bp|location=Sequence derived from alignment at H-paniculata_contig2104:12691..15454+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGGTAGGGATGCGGGTGGTAGTTCCGGCTCAACTGCTGCAGATGATGC
TGTTCGTTGGCTTTCGCAAATTGTATCGGACGCCAGCGCGGAAGACATAG
AAGACAATAATCAAGTTGCGGTGGTGCAGTCGGCATCAGCAACAGGGATG
GTGGATCCGAGATCAGGATTAGGGCCTATACCGGCGACGGCGACAGTATT
AGGAGTGGCGGCCGCCAATAATAAGGCCGACAGGATGGCCGAGCGGCAGA
TAGCAAACGCGCCTCGGGGTGCTCTTGTCCGTTTTTTTCCGGATTGGCGG
GAAAACGTCCGATTCGTGTGTCGGCAGAACGCGGAGGACCTGCGAGACGC
GCTTCGCGGCTTACGTGAGGCACTCGTCAAGGAGAAGGAAAAGGGGGAGA
ATCAGACGGCGACGAGATCGGCGAAATGGGGATACGACGATCGCAGCGGG
CAACGGCTTGAGTACACAGAGGATAGCGAGAACGAGTGGGGGGTGGCGGA
GGACGATGAGCAGGAGGACATGGGTACAGCAACGCATGGGCTCGATGGGC
GTCGTGGGTGGAGAAGAGGAGGTACGAAGGCACGCGCGTTGGAGTTTTTC
GAGAGGGTCATTGTGGAGATCTTGGAGTCGAGGTCTACAACTAATGCTGA
TGCTGGTGCTTTTACTGCGGCTGCTACTTCAATTGCGGCTTTTGACATGG
ACAGCAGTGGACAGAAGTCAACGTATTTTGTCCGTCGTGCTGGCATTGGC
GAGCACAAAAACGATCGGGACGGCAATGTATACTGCGTTGAACCTGCCGC
TGCTGGGAAATCTGAGTGCGCTGCAAGCGACGGCGGTGGCGTTGGCGAAT
GCAGACGGGCCAGGCACAGTAGCCTCGCTGACGCCGACATAGACTACGAC
GGTGCGGCGTTCAAGACAAGTGAATTGCCAACATTGGCAGGAGGACGCGG
AGACCTAGCGGAGAAGAAGATACTGTCGGCTGGGGAGGCTATTGTAGGAG
GAGAAGCAACTGACGATGTGGTTGCGGTTACGTTCGATAGATGCGCGTTC
GGTGCGTCGTTTAGTGTTGAGGATTTCGAGACAGAGGCAGCGGGCAAGGA
GAAAGAGAAGGATCAGGGTGATGGCGAAGGTGCTGGCAGGGATGCCCCCA
GGAAAGCAAAAGGATGGTAGGGATGCGGGTGGTAGTTCCGGCTCAACTGC
TGCAGATGATGCTGTTCGTTGGCTTTCGCAAATTGTATCGGACGCCAGCG
CGGAAGACATAGAAGACAATAATCAAGTTGCGGTGGTGCAGTCGGCATCA
GCAACAGGGATGGTGGATCCGAGATCAGGATTAGGGCCTATACCGGCGAC
GGCGACAGTATTAGGAGTGGCGGCCGCCAATAATAAGGCCGACAGGATGG
CCGAGCGGCAGATAGCAAACGCGCCTCGGGGTGCTCTTGTCCGTTTTTTT
CCGGATTGGCGGGAAAACGTCCGATTCGTGTGTCGGCAGAACGCGGAGGA
CCTGCGAGACGCGCTTCGCGGCTTACGTGAGGCACTCGTCAAGGAGAAGG
AAAAGGGGGAGAATCAGACGGCGACGAGATCGGCGAAATGGGGATACGAC
GATCGCAGCGGGCAACGGCTTGAGTACACAGAGGATAGCGAGAACGAGTG
GGGGGTGGCGGAGGACGATGAGCAGGAGGACATGGGTACAGCAACGCATG
GGCTCGATGGGCGTCGTGGGTGGAGAAGAGGAGGTACGAAGGCACGCGCG
TTGGAGTTTTTCGAGAGGGTCATTGTGGAGATCTTGGAGTCGAGGTCTAC
AACTAATGCTGATGCTGGTGCTTTTACTGCGGCTGCTACTTCAATTGCGG
CTTTTGACATGGACAGCAGTGGACAGAAGTCAACGTATTTTGTCCGTCGT
GCTGGCATTGGCGAGCACAAAAACGATCGGGACGGCAATGTATACTGCGT
TGAACCTGCCGCTGCTGGGAAATCTGAGTGCGCTGCAAGCGACGGCGGTG
GCGTTGGCGAATGCAGACGGGCCAGGCACAGTAGCCTCGCTGACGCCGAC
ATAGACTACGACGGTGCGGCGTTCAAGACAAGTGAATTGCCAACATTGGC
AGGAGGACGCGGAGACCTAGCGGAGAAGAAGATACTGTCGGCTGGGGAGG
CTATTGTAGGAGGAGAAGCAACTGACGATGTGGTTGCGGTTACGTTCGAT
AGATGCGCGTTCGGTGCGTCGTTTAGTGTTGAGGATTTCGAGACAGAGGC
AGCGGGCAAGGAGAAAGAGAAGGATCAGGGTGATGGCGAAGGTGCTGGCA
GGGATGCCCCCAGGAAAGCAAAAGACGGTGGGGATCCTGTCGCCCCCGCA
GCGGAAGAGAGCAACGGTGCCATAGTTCTAAGTGGCGACAGCGGCTGCAG
TGCAATTGTGACGTTGGATCTCACCGCTGCGGAATTCCCTAACCACGACA
TCTACCTTCATAATGGAGATAAAGATCCTCCAGATACGACCGCCGATGGT
ATACTCGATAGCTACGCTGATGTTGATGTTGATGCTGACGCTGATGTTGC
GCTGCATGAAGCGCCGTCACCGTCTCACGCCGATGTTGCTGCCGGTGACG
CTAGTCATGTCGTCAATGGCGGCGGCGGCGGCGGCATGAGCGGAGGGAGT
CTGTGGCATGTTGATATTCATGGACAACGCAGTTGCGATGTAGATCAAGC
TGCTGACGACTTGGTGAGGGATAACGGAAACGATTGCAACGGCCGTGATG
TTGGCGTCGGCGGCGACAGTGTCGGCAAAGATGGGAACCGGGACTACAAC
TGCCTTGACTGTGGCTGTGACGTCTGTGGCTGTGCTGCTGATCCCCAAGA
TAGCGATGGTGAGGTGGAGGAGATTGCCATGCCCGACGACGACTTTGGGT
ACTACTACGACCACGCCTTCTCGCCGGAAGAAATGTCGGGGTTTGCCACG
GGAGACGAACTTTTTGCCCAAAACGACCCAGCTGCCCAAGAGCAAGGGCC
GCCAAACCCCGCGTCAATCCATCAGCACCCTCCGCGGTCACCAGTGACGG
AAAACATCGTATCGGCTGTTGTCGAGGCTAACCGGACGCATCATCGTCGG
CATGAAAGTCCTTCTCCGTTACCACGGGAAAAACTGACAAAATCGAAGAG
CATATCAACCTCCGCCGCCACCGCTGCCGCCGCCGCCGAACCTACAAACA
GCCGAGAGAGAGATCCCGTCCCCCCCTACAACTATTTCGGCCGGGTAGCA
GCTGGGCGGCCGCCGTTAACCCAGGGAGCGCTGGCGCTGGCCAAACCTTC
CCGGTATGACGATAACATCGAAGCGACGTCGACATCGTCTTTGAGGACGG
CGGGCTTCGCGCGAGGCCGGTCCCAGCCGGTCGGGGGGGGCAGTGGGGAG
CTGAGACTTTACACGCTTGCGCCCGCAAGGGGGGGCGTGAATCGGGTGCA
GCAAGGTGAAGTGGGTATGTCGAGAGGAGGTGGTCGTGACGGGACGGTGG
GGATCCTGTCGCCCCCGCAGCGGAAGAGAGCAACGGTGCCATAGTTCTAA
GTGGCGACAGCGGCTGCAGTGCAATTGTGACGTTGGATCTCACCGCTGCG
GAATTCCCTAACCACGACATCTACCTTCATAATGGAGATAAAGATCCTCC
AGATACGACCGCCGATGGTATACTCGATAGCTACGCTGATGTTGATGTTG
ATGCTGACGCTGATGTTGCGCTGCATGAAGCGCCGTCACCGTCTCACGCC
GATGTTGCTGCCGGTGACGCTAGTCATGTCGTCAATGGCGGCGGCGGCGG
CGGCATGAGCGGAGGGAGTCTGTGGCATGTTGATATTCATGGACAACGCA
GTTGCGATGTAGATCAAGCTGCTGACGACTTGGTGAGGGATAACGGAAAC
GATTGCAACGGCCGTGATGTTGGCGTCGGCGGCGACAGTGTCGGCAAAGA
TGGGAACCGGGACTACAACTGCCTTGACTGTGGCTGTGACGTCTGTGGCT
GTGCTGCTGATCCCCAAGATAGCGATGGTGAGGTGGAGGAGATTGCCATG
CCCGACGACGACTTTGGGTACTACTACGACCACGCCTTCTCGCCGGAAGA
AATGTCGGGGTTTGCCACGGGAGACGAACTTTTTGCCCAAAACGACCCAG
CTGCCCAAGAGCAAGGGCCGCCAAACCCCGCGTCAATCCATCAGCACCCT
CCGCGGTCACCAGTGACGGAAAACATCGTATCGGCTGTTGTCGAGGCTAA
CCGGACGCATCATCGTCGGCATGAAAGTCCTTCTCCGTTACCACGGGAAA
AACTGACAAAATCGAAGAGCATATCAACCTCCGCCGCCACCGCTGCCGCC
GCCGCCGAACCTACAAACAGCCGAGAGAGAGATCCCGTCCCCCCCTACAA
CTATTTCGGCCGGGTAGCAGCTGGGCGGCCGCCGTTAACCCAGGGAGCGC
TGGCGCTGGCCAAACCTTCCCGGTATGACGATAACATCGAAGCGACGTCG
ACATCGTCTTTGAGGACGGCGGGCTTCGCGCGAGGCCGGTCCCAGCCGGT
CGGGGGGGGCAGTGGGGAGCTGAGACTTTACACGCTTGCGCCCGCAAGGG
GGGGCGTGAATCGGGTGCAGCAAGGTGAAGTGGGTATGTCGAGAGGAGGT
GGTCGTGACGGG
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