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Homology
BLAST of mRNA_H-paniculata_contig2104.5497.1 vs. uniprot
Match: A0A6H5J8H1_9PHAE (Structure-specific endonuclease subunit SLX4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8H1_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 6.960e-10 Identity = 43/76 (56.58%), Postives = 57/76 (75.00%), Query Frame = 3
Query: 723 STFRAKERRFLETIKDLDAKLERLRRERDTTLKKLAAHRALGARVSAGA--VPATSAG----GVSKSMDEVVGQLF 932
+ FRAKERR + +KDLD KLERL+++RD+ L+KLAAHR LGAR+SAGA VP+ S+G G K+ +EVV +F
Sbjct: 349 AAFRAKERRLVGVLKDLDVKLERLKKDRDSALRKLAAHRTLGARLSAGAGGVPSESSGXXXXGAPKTAEEVVDIIF 424
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 7 |
| Model size | 1322 |
| Cds size | 1011 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2104.5497.1 >prot_H-paniculata_contig2104.5497.1 ID=prot_H-paniculata_contig2104.5497.1|Name=mRNA_H-paniculata_contig2104.5497.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=337bp
VGRSGSGKRGRKRSTKNNEITAAGGSIGCRTKTAIAAAPDHDDHDNDKDF QSQHQLSSRKRQRPKAIKRPSRRQPPSPPQRPPPSASAQPQRHIEEPEKR AVKKELEGEGSQTVDASSRHCEELGTPSAKVGGEGAGLAAKNTEQRCPVC GSALWGLDIRAREVHTNSCLDELSTSSKVNLSEAAGSFGGGSKARDARST TVEPGRRASTGVAVEPKTEFQEHIQMAKALSKSLVVAAPPAARSGLRNAA FWKPLKTSTQSWSVYVESGTPPSKNWQRIGLLAPGCPPGRCRQHLLVGSP RAWTRWSDSFFPAAGETQCLHRHADRRRPLRAPPGR* back to topmRNA from alignment at H-paniculata_contig2104:6442..12022+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig2104.5497.1 ID=mRNA_H-paniculata_contig2104.5497.1|Name=mRNA_H-paniculata_contig2104.5497.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5581bp|location=Sequence derived from alignment at H-paniculata_contig2104:6442..12022+ (Halopteris paniculata Hal_grac_a_UBK monoicous) GTAGGCCGCAGCGGTTCTGGAAAGAGAGGCCGCAAGCGTAGTACGAAGAA
TAACGAAATCACCGCCGCTGGTGGAAGTATCGGGTGCAGGACCAAGACTG
CTATAGCCGCCGCCCCTGACCACGACGACCACGATAATGACAAAGACTTC
CAGTCCCAGCACCAGCTCTCTTCTCGGAAGAGACAACGGCCTAAGGCAAT
CAAAAGACCCTCGCGAAGGCAACCCCCGTCCCCGCCACAACGACCCCCCC
CCTCCGCATCAGCTCAACCACAGAGGCATATTGAAGAGCCTGAGAAACGA
GCAGTCAAAAAGGAACTAGAAGGAGAGGGGTCACAAACAGTCGATGCCAG
TAGCAGACATTGTGAGGAGCTAGGCACTCCGTCAGCGAAGGTGGGTGGCG
AAGGTGCGGGGTTGGCAGCCAAAAATACGGAACAGCGGTGCCCTGTGTGC
GGGAGCGCCTTATGGGGTCTAGACATTCGAGCTAGGGAGGTGCGTTTCCT
GGGTCAGTTGTATCTTCGTTTGCGGTTGCTTTTTGTCTTGTATGTTTAAA
CAGACGACAGTACAATATCACCACTCAGATAACCCTTACAGATCTGGCTG
CATTGCGACAAATTTCGACACGCGGTTGTTGACGGCCCCGCTTTGAAATG
GAGAGGGGGGGTGCTTTCTGGCAGGGGGGGGGGGGTACCGACTGTCGACG
GACAGACTTGCTTGGGTTGGAGTGAGATCAGACCTTTTTTTCATGTGCGA
AAACGCTTTCCACTGTTATTCAGTCGTCGTTTGTCAGTACTGTGGTGAGC
ATGCACAAGGGTAGACAGCTCTTGGACCGCCAGATGGTATTATTCACGAT
GACTCAACAATCTATCAGGCTGCACCACTACACTACTATTACTGTCTGAC
AGGTGCACACAAATTCATGTCTAGACGAGCTTTCGACGTCAAGCAAGGTC
AACCTTAGTGAAGCTGCGGGCTCATTCGGAGGAGGTTCTAAGGCAAGGGA
CGCCCGCTCGACAACGGTAGAACCGGGACGACGTGGTGAGCCACGACTCG
GAGACATCACGAATAACCGTTCTTGTCCACCCCGGACGCTCTATATCTAA
GTTGTAGAAATTCCAGATGAGATGGGCTTGATTGTTTGTTTGGCGGAGAG
GAAGGAGGGGTGCCATTCAGGAGGAAGATCCGCTGTCCGGTGTGTCAGCG
ATTTTACTCGCGATATTCATCTTCTCCCAGAAATGTTTTCTCCTGTGTCT
CACGTCACCCGTTTGATGCCCATTTTTTTTACTGGGGCGTGCACAGGGCT
GCTAGGGGGGGTCTTGTGGTGTTGTGTCGCTGCTATGTACTCCCTGCAGG
GAGTAAACAAGCAGCCCTCCCCATTCAAATTATTTAAGCTTTTGTGATAA
ACTCGTTTTTGGATCTCGATACAGATAATGGCAGCTGCCCCAACAACCCA
GCTGTCTAAACCTAACCGCAACCCTAACCCTGAACCGGAACCAGTCGACC
CTATTATACGCTGGCAGGGCGTACATCCGATTAAACTGCATTGGCAAAAG
GGTAATTGGGTGGGGGAGCGTTGCTTTTTTAGTCGCAGCAGAGAGTTAAG
TCTGGCTTATAATGGTATTTTGTAAATATCTTTCGCAATTCTGGGTTTAG
TGGAAAATAAAGCATATCGTTCGAAAGCCTATACGTTCAGCTTTCATGTA
GATATATTAGGGCAGATTTTGCAAAAAACAGCCAAATAGGCCGAAATCGA
CTGAAAATATTGGTCAATGGTTGATAAACTCTCAAGAAGATCTACGATTA
AGAAATAGTTTGTTGTGTTGTATTCCTTGGCATTCTATACTACCTAGTAC
AGTAATTTCATCGTTCATTACTGTCATCCTCTCCACCAATCCACCAATTG
AAGACCGCGTCGTAAGCGGCTCTGTCAATCGGGACCAAGTGATCCAAAAG
CCCCGGTATGCTCAATGTTTAAACCGTTTTCCGCTAGCGCCTTCTACACT
TGGGTATACGGCTTGAAGACACTCTACCGAACCAACTGTAGAGTATCCGC
GTCATACTGGTGGTACATGCTAGGAAGCCCCTCCACAAGGGTGTCTAACG
TGCGGTAGCGCTCCCTCCACACTCTAGACTATTTCAGGGATTCGAAAGAC
CCCAAATCGTTGATATTGAGATCGGGAGACTGCGCCGGCTGCGTTACGAG
CTTGATGTTCCATCCGTCCTCCCTCCCTGCCAGGTTTAGCTTCCTCGGCG
TGCCCTTACCCGTGTGCGGGCTTGTGCCATATTGCTGCACAACCGCTTCC
TCCTCCTCCAACCAAGGCATATTTTCCTTGGGTGTGGAGAAGAAAACCTC
CGTGTACTATTCCTGCTATCGCTCGCTGTTGATGGTGACGTCGACCTCGT
ACTCTTGGTATGATTGAGGAGCTTCATTTTGCTTTCGCTCGTTTGGAAAA
TCTGCGTACATGTGGAGAAATGGCTCGCGGAACAACGGAAAACCATTATT
TTCAGCTGATTTCGGCCTATTTGGCTGCTGTTGCAAAGTCTGCCATTGAA
GAAAAACAAAGGTGTAGAGATAGATCCCCTATTCTCAACCATTTCGAATT
CAAAAAACTTTTGAAGATATCTGCATGCAAGCTGAACGTATAGGTTTTGG
AATGGTGTGCTTTATTTCTCACGAAACCCAGAGTTGCGAAATGTAACTAT
AAAATGCCGCTATAAGCCAGACTTATGGGACAGGGGTAGTATGGCAATGG
CTAGGGGACTGCAGCCTTTCCGTATGTGAAGAGGGGAGTTTTTTGTGTAC
ATTGATGCTTAGTGTCGCGATATCAAAACGAGAATCTCAAAAGTAAAAAT
ATTCTTTTAAGAGGCACCAGTCATGTCTGCACAACCATCAATCACTGTTA
GTCATAATGAAGAGCTTCTTCAAAAATTAACATTCGTGTAGATAGGATCT
ACTATGTATACGGGCGGGAAATCAACGTTTTGTGTGCCCGCTAGAACTTG
TGTAAATGTACATACAGCAGCTCCACAACACCTGATGCGTTGCCGAACAC
TAATCTATAGATGATTCCGATGTTGTTGGCCCATTAAATTGCTCCGCATT
TCTTGACCCGATTTCAGCGTCAACGGGAGTCGCGGTAGAACCCAAAACAG
AGTTCCAAGAGCACATCCAGATGGCCAAGGCGCTGTCTAAGTCTCTTGTA
GTGGCAGCCCCCCCGGCAGCAGCTGCGGAAGACCCCATAGACGACGAGGT
GAGCTTACATGATATTGCCCGTATTTTCACGTGACAAGTAGTAGTTGGAA
TTGCACGATTGTCGCGTGTGATCAGAACCAAAAGCGGTTCGCGGTCGGTT
CTATCGGACTTCTTCTGTCGTTTTCGTGAACAGCCGAACTTTCAATTTAA
CAAATATTGATATACTAGTACTACGGCTCGCTTCCTTCGTACAAAGATTT
CAATGTTCGTCTTCCGCGATGTTATGAATACCTGAGTACCGATTTGAACA
TACGTTTCTACACGACGACCATGACCAGGGCATTATTGTAATAAAACACG
AATAAACACGAAGGCTATGCATGTTGTGCTCGTGCTCGTGGAGGTGGAGG
TGGTGGTGGTGGTTCATGTACCATGACCAAGTTGTATGTGGCCGCCGCGT
GGTGTCCTCTTCGCTACCGGACTCTATATTCGGCAATGTTACATATGTGC
GTACTCAGTTACCATCGCAAATCTATATCGAACTCCGACGTATGTGCGAT
TTTGCGCGTATTTTGCAAGCCCTCCCTTGTGCGACGTATAACGACCGTTT
TTGTCGTTGTATGTTACAAGCGGCTGCTCACGCTCAGTAGCGTTCGATGT
AAATTTGTGTGCTACCGAAGCGCATCTTAATAAAAAATATGGGGGGAATG
ATGAGCCAATAACCAAATATTGTGGAACGCGCTGGCTGCAGTTGGCCGGC
AAAATCTTCGAGCTCGATGGGATGGGACTTGAAATTTGTTGACAAAATTG
CGCCCGAAAAAAATGGTTTTAGGAAGGTGACCCTTATCGTCTTCCATAAG
TCACCACGAAAAATCTTGAATGAAGTATGAAAATATTTCGAAACGACCAT
AACCCTTTCCGTAGTCAACTCATCAATATATATATATATATATATATATA
TGTGTGTGTTTGTATCCCGCAACGTCGGTCTCCCCCCTCCCCCCCCTTAA
CAGGAACTTGCAAGGAGAGACCCGGCAGCGTTCCGGGCTAAGGAACGCCG
CTTTCTGGAAACCATTAAAGACCTCGACGCAAAGCTGGAGCGTTTACGTC
GAGAGCGGGACACCACCCTCAAAAAGTGAGTGGATTTTGAGAGTGAAGCC
GGTGATGCCTTCTTTATCGACATGGGTTCTATTTACGCAAGTAGCGATGA
AGCCAGCGCGGTGGTGCCACCCGCCTTCCCCTCTTGAACACTAAGTAGGT
CGTGATTTATTTAGTGTTGTTTTTCCATCTCTTGGGGTAGGTCAGCAGCA
ACTCTGTTTATTTTATGCGGTCCGCCTACTGTAGAAGTGAGAACAATTGA
CAATTGGACATAGGGGCGGCTTCTGTCGAGGTATTTCGAACTACTTTTTA
GCGTGATTCCCCGCCCCCCACCCACCCCCCCCAGCTCACATATTATTTTT
TTCACAATAGAGTGCTTTGGGTGAATCAGTACGTGGTATTTTGTTTGTGG
AGTTCAATCGTTCCCTCTCTCGTGATTGGCGGCTTGATGTCAGATTGGCA
GCGCATCGGGCTCTTGGCGCCAGGGTGTCCGCCGGGGCGGTGCCGGCAAC
ATCTGCTGGTGGGGTCTCCAAGAGCATGGACGAGGTGACGCGACGATTTA
CCTACAATGTTCCTACATGGTGCCAAGTACAGTCAGCCCCAGGCCATCGC
CTGACTATACTACGAAAGTAGATTTGCTTGGGATTGATCTTTTTCCCAAA
TCAAGAAAAAATCACGAAAATATGATGCATTATATCTCTGGGCACGATGA
AGGTTCTGTGAGGGCACTGTATTTAATCAAGACGGGGTAACTGCTGAAGG
TTCATTGGGTAACCCGATGCGTGTGACCCATCCTTCCCTGTCTTGTTACA
AATAACCCCGCCCTCCCCTACGTCCTTTCTCTTCCCACGGTTTTGCATCG
CTCGAAAAAACAGGTGGTCGGACAGCTTTTTCCCGGCGGCGGGGGAAACT
CAATGCCTCCACAGACACGCGGATCGTCGACGCCCACTCCGCGCGCCTCC
AGGACGGTAACAGGGGCAAGAGGTAGGGATGGCACCAAGAGAGCGGGAAA
AAAGCATCCACTATCGTCGTCATCGTGCACGCTGTACGCCCACCTGGGAG
ATGGATCTGTCGGTGGTGGTGGTGGTGTTGCTGCTACTGCTGCTGCTGTT
GCTGCTGTTGCTACGGTTGAGACTATGTCGAGAGAAACTTGGGTTGGCCG
GGAGGTGGATGATAACTCTCCTTTCCGCTCCAGTAGTTGTCGCCGCGGAA
CAGCGGCCGAGGTGGCAATAGAAAGTCGAGATGCTAAGAGCGCGGATGAA
GATAACGTGGTAGGAGACTGCGATATTTGTT back to topCoding sequence (CDS) from alignment at H-paniculata_contig2104:6442..12022+ >mRNA_H-paniculata_contig2104.5497.1 ID=mRNA_H-paniculata_contig2104.5497.1|Name=mRNA_H-paniculata_contig2104.5497.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2022bp|location=Sequence derived from alignment at H-paniculata_contig2104:6442..12022+ (Halopteris paniculata Hal_grac_a_UBK monoicous) GTAGGCCGCAGCGGTTCTGGAAAGAGAGGCCGCAAGCGTAGTACGAAGAA TAACGAAATCACCGCCGCTGGTGGAAGTATCGGGTGCAGGACCAAGACTG CTATAGCCGCCGCCCCTGACCACGACGACCACGATAATGACAAAGACTTC CAGTCCCAGCACCAGCTCTCTTCTCGGAAGAGACAACGGCCTAAGGCAAT CAAAAGACCCTCGCGAAGGCAACCCCCGTCCCCGCCACAACGACCCCCCC CCTCCGCATCAGCTCAACCACAGAGGCATATTGAAGAGCCTGAGAAACGA GCAGTCAAAAAGGAACTAGAAGGAGAGGGGTCACAAACAGTCGATGCCAG TAGCAGACATTGTGAGGAGCTAGGCACTCCGTCAGCGAAGGTGGGTGGCG AAGGTGCGGGGTTGGCAGCCAAAAATACGGAACAGCGGTGCCCTGTGTGC GGGAGCGCCTTATGGGGTCTAGACATTCGAGCTAGGGAGGTAGGCCGCAG CGGTTCTGGAAAGAGAGGCCGCAAGCGTAGTACGAAGAATAACGAAATCA CCGCCGCTGGTGGAAGTATCGGGTGCAGGACCAAGACTGCTATAGCCGCC GCCCCTGACCACGACGACCACGATAATGACAAAGACTTCCAGTCCCAGCA CCAGCTCTCTTCTCGGAAGAGACAACGGCCTAAGGCAATCAAAAGACCCT CGCGAAGGCAACCCCCGTCCCCGCCACAACGACCCCCCCCCTCCGCATCA GCTCAACCACAGAGGCATATTGAAGAGCCTGAGAAACGAGCAGTCAAAAA GGAACTAGAAGGAGAGGGGTCACAAACAGTCGATGCCAGTAGCAGACATT GTGAGGAGCTAGGCACTCCGTCAGCGAAGGTGGGTGGCGAAGGTGCGGGG TTGGCAGCCAAAAATACGGAACAGCGGTGCCCTGTGTGCGGGAGCGCCTT ATGGGGTCTAGACATTCGAGCTAGGGAGGTGCACACAAATTCATGTCTAG ACGAGCTTTCGACGTCAAGCAAGGTCAACCTTAGTGAAGCTGCGGGCTCA TTCGGAGGAGGTTCTAAGGCAAGGGACGCCCGCTCGACAACGGTAGAACC GGGACGACGTGGTGCACACAAATTCATGTCTAGACGAGCTTTCGACGTCA AGCAAGGTCAACCTTAGTGAAGCTGCGGGCTCATTCGGAGGAGGTTCTAA GGCAAGGGACGCCCGCTCGACAACGGTAGAACCGGGACGACGTGCGTCAA CGGGAGTCGCGGTAGAACCCAAAACAGAGTTCCAAGAGCACATCCAGATG GCCAAGGCGCTGTCTAAGTCTCTTGTAGTGGCAGCCCCCCCGGCAGCACG TCAACGGGAGTCGCGGTAGAACCCAAAACAGAGTTCCAAGAGCACATCCA GATGGCCAAGGCGCTGTCTAAGTCTCTTGTAGTGGCAGCCCCCCCGGCAG CACGTTCCGGGCTAAGGAACGCCGCTTTCTGGAAACCATTAAAGACCTCG ACGCAAAGCTGGAGCGTTTACGTCGAGAGCGGGACACCACCCTCAAAAAC GTTCCGGGCTAAGGAACGCCGCTTTCTGGAAACCATTAAAGACCTCGACG CAAAGCTGGAGCGTTTACGTCGAGAGCGGGACACCACCCTCAAAAAATTG GCAGCGCATCGGGCTCTTGGCGCCAGGGTGTCCGCCGGGGCGGTGCCGGC AACATCTGCTGGTGGGGTCTCCAAGAGCATGGACGAGATTGGCAGCGCAT CGGGCTCTTGGCGCCAGGGTGTCCGCCGGGGCGGTGCCGGCAACATCTGC TGGTGGGGTCTCCAAGAGCATGGACGAGGTGGTCGGACAGCTTTTTCCCG GCGGCGGGGGAAACTCAATGCCTCCACAGACACGCGGATCGTCGACGCCC ACTCCGCGCGCCTCCAGGACGGTAAGTGGTCGGACAGCTTTTTCCCGGCG GCGGGGGAAACTCAATGCCTCCACAGACACGCGGATCGTCGACGCCCACT CCGCGCGCCTCCAGGACGGTAA back to top
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