mRNA_H-paniculata_contig21038.5495.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21038.5495.1
Unique NamemRNA_H-paniculata_contig21038.5495.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig21038.5495.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 2.320e-26
Identity = 57/136 (41.91%), Postives = 85/136 (62.50%), Query Frame = 1 
Query:    7 KRGWTGPWISMQCDATSMNNTKYYTVSFSWVPEDWSGMERVAFCTRAFPGKQTAAEVEPWLRE--------VTLEAFGPIVGVENCKPSNIYLAITVNRGGNMINAIDALGGKCLICSGHRLNTAVSWATGICGSI 390
            K G+ GP++  Q D T++ N +Y T S S++ E  + + RV   TRAFPG  TAA++EPW+ +        +T E F  ++G EN +P +++LA TV++GGN++NA   L  + L C+ HRLN+   WA GI GSI
Sbjct:  260 KLGYVGPFLGAQLDLTTVANEEYITFSVSYIAEAATTITRVGLATRAFPGSHTAADIEPWIEKASFTTFKLLTTEFFADMMG-ENVQPKDVFLAFTVDQGGNVVNACRNLDVEVLKCNAHRLNSVTMWALGINGSI 394
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BLAST of mRNA_H-paniculata_contig21038.5495.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 2.770e-25
Identity = 52/125 (41.60%), Postives = 82/125 (65.60%), Query Frame = 1 
Query:   13 GWTGPWISMQCDATSMNNTKYYTVSFSWVPEDWSGMERVAFCTRAFPGKQTAAEVEPWLREVTLEAFGPIVGVENCKPSNIYLAITVNRGGNMINAIDALGGKCLICSGHRLNTAVSWATGICGS 387
            G++G ++  Q D T++   +Y T + S+V +  + + RVA   RAFPG  TA ++ PW+ E+T E F   +G E+ +P +++LA TV++GGN++NA  ALG   + C+ HR+NTAV WA GI G+
Sbjct:  280 GYSGAFLGAQLDLTTVAGEEYITFTVSYVEKGSTDVTRVALACRAFPGTHTADDISPWIEELTREYFADFMG-EDVEPKDVFLAFTVDQGGNVVNACKALGVPVVKCNCHRVNTAVLWALGIAGN 403
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BLAST of mRNA_H-paniculata_contig21038.5495.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.010e-11
Identity = 36/75 (48.00%), Postives = 53/75 (70.67%), Query Frame = 1 
Query:  193 EVTLEAFGPIVGVENCKPSNIYLAITVNRGGNMINAIDALGGKCLICSGHRLNTAVSWATGICGSISAAGETCRN 417
            ++T E FG  +G E+ +PS+++LA TV++GGN++NA  ALG + + C+ HR+N+AV WA GI GS      TCRN
Sbjct:    6 QLTKEYFGGFMG-ESVEPSDVFLAFTVDQGGNVVNACTALGVQVVKCNCHRINSAVVWALGIAGS----ATTCRN 75
[Close]
BLAST of mRNA_H-paniculata_contig21038.5495.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 1.240e-8
Identity = 30/66 (45.45%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:  193 EVTLEAFGPIVGVENCKPSNIYLAITVNRGGNMINAIDALGGKCLICSGHRLNTAVSWATGICGSI 390
            ++T E F  ++G EN +P +++LA TV++GGN++NA   L  + L C+ HRLN+   WA GI GSI
Sbjct:    2 QLTTEFFADMMG-ENVQPKDVFLAFTVDQGGNVVNACRNLDVEVLKCNAHRLNSVTMWALGINGSI 66
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21038.5495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KJ52_9PHAE2.320e-2641.91Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JRT6_9PHAE2.770e-2541.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDJ6_9PHAE1.010e-1148.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAN7_9PHAE1.240e-845.45Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21038contigH-paniculata_contig21038:3375..4208 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size423
Cds size420
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929556.819721-CDS-H-paniculata_contig21038:3374..35691622929556.819721-CDS-H-paniculata_contig21038:3374..3569Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21038 3375..3569 +
1691480912.5152035-CDS-H-paniculata_contig21038:3374..35691691480912.5152035-CDS-H-paniculata_contig21038:3374..3569Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21038 3375..3569 +
1622929556.8352246-CDS-H-paniculata_contig21038:3982..42071622929556.8352246-CDS-H-paniculata_contig21038:3982..4207Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21038 3983..4207 +
1691480912.5247183-CDS-H-paniculata_contig21038:3982..42071691480912.5247183-CDS-H-paniculata_contig21038:3982..4207Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21038 3983..4207 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21038.5495.1prot_H-paniculata_contig21038.5495.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21038 3375..4207 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21038.5495.1

>prot_H-paniculata_contig21038.5495.1 ID=prot_H-paniculata_contig21038.5495.1|Name=mRNA_H-paniculata_contig21038.5495.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=140bp
VKKRGWTGPWISMQCDATSMNNTKYYTVSFSWVPEDWSGMERVAFCTRAF
PGKQTAAEVEPWLREVTLEAFGPIVGVENCKPSNIYLAITVNRGGNMINA
IDALGGKCLICSGHRLNTAVSWATGICGSISAAGETCRNR
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mRNA from alignment at H-paniculata_contig21038:3375..4208+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21038.5495.1 ID=mRNA_H-paniculata_contig21038.5495.1|Name=mRNA_H-paniculata_contig21038.5495.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=834bp|location=Sequence derived from alignment at H-paniculata_contig21038:3375..4208+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCAAGAAGAGGGGCTGGACCGGCCCCTGGATAAGCATGCAGTGCGATGC
AACAAGCATGAACAACACGAAGTACTACACCGTGAGCTTCTCGTGGGTCC
CGGAGGATTGGAGTGGGATGGAACGAGTGGCGTTCTGCACGAGGGCTTTC
CCCGGCAAGCAAACTGCGGCGGAGGTGGAACCTTGGCTGCGAGAGGTGTG
TTAATTAAGTTATTCTGGATGCTCAGCGCTGACATTCTCCCTCATCTGTG
TATTCGTGTATTCGATTCGTTGACTGGTGGTGCTTGCACAGGATCGGGAT
CGACGAAGCGTACCAAGCTGTTACAATTCGTGTAATTCATCGAGTATTTG
TGATGTACAGATTGGATATACTTGCTGTTGTGCTGCAAGTCTTTAAAATT
TCTTCGAGTACGATTTACGACTTCCGATAGTGGAATTGTTGCATAATGTC
TTCAGGTCCTTGCACAACAGTGCCAACTCGGAGCAGCCCACAACGAAGTG
CCAGTTTGCTGTTCGAAACTACGGCGTCGAGTCGCTGTCACTTCTGTTCA
TTTCTGCACTGGCTCGACTTTCACTGGTAAATCCGACTGATGCTCTCAAT
GTCCCCAGGTTACCCTTGAGGCTTTTGGGCCTATCGTAGGGGTGGAGAAC
TGCAAGCCCAGTAACATCTACCTCGCCATCACTGTCAACCGAGGCGGCAA
CATGATTAATGCAATCGACGCCCTGGGCGGCAAGTGCCTCATCTGCTCTG
GACATCGGCTGAACACGGCGGTTTCTTGGGCGACGGGTATTTGCGGCTCG
ATCTCGGCGGCCGGGGAAACGTGCAGGAACCGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig21038:3375..4208+

>mRNA_H-paniculata_contig21038.5495.1 ID=mRNA_H-paniculata_contig21038.5495.1|Name=mRNA_H-paniculata_contig21038.5495.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at H-paniculata_contig21038:3375..4208+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCAAGAAGAGGGGCTGGACCGGCCCCTGGATAAGCATGCAGTGCGATGC
AACAAGCATGAACAACACGAAGTACTACACCGTGAGCTTCTCGTGGGTCC
CGGAGGATTGGAGTGGGATGGAACGAGTGGCGTTCTGCACGAGGGCTTTC
CCCGGCAAGCAAACTGCGGCGGAGGTGGAACCTTGGCTGCGAGAGGTCAA
GAAGAGGGGCTGGACCGGCCCCTGGATAAGCATGCAGTGCGATGCAACAA
GCATGAACAACACGAAGTACTACACCGTGAGCTTCTCGTGGGTCCCGGAG
GATTGGAGTGGGATGGAACGAGTGGCGTTCTGCACGAGGGCTTTCCCCGG
CAAGCAAACTGCGGCGGAGGTGGAACCTTGGCTGCGAGAGGTTACCCTTG
AGGCTTTTGGGCCTATCGTAGGGGTGGAGAACTGCAAGCCCAGTAACATC
TACCTCGCCATCACTGTCAACCGAGGCGGCAACATGATTAATGCAATCGA
CGCCCTGGGCGGCAAGTGCCTCATCTGCTCTGGACATCGGCTGAACACGG
CGGTTTCTTGGGCGACGGGTATTTGCGGCTCGATCTCGGCGGCCGGGGAA
ACGTGCAGGAACCGTGTTACCCTTGAGGCTTTTGGGCCTATCGTAGGGGT
GGAGAACTGCAAGCCCAGTAACATCTACCTCGCCATCACTGTCAACCGAG
GCGGCAACATGATTAATGCAATCGACGCCCTGGGCGGCAAGTGCCTCATC
TGCTCTGGACATCGGCTGAACACGGCGGTTTCTTGGGCGACGGGTATTTG
CGGCTCGATCTCGGCGGCCGGGGAAACGTGCAGGAACCGT
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