mRNA_H-paniculata_contig21038.5494.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21038.5494.1
Unique NamemRNA_H-paniculata_contig21038.5494.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21038.5494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21038contigH-paniculata_contig21038:2387..3113 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size197
Cds size195
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21038.5494.1prot_H-paniculata_contig21038.5494.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21038 2388..3113 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929556.729454-UTR-H-paniculata_contig21038:2386..23871622929556.729454-UTR-H-paniculata_contig21038:2386..2387Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21038 2387..2387 +
1691480912.4874117-UTR-H-paniculata_contig21038:2386..23871691480912.4874117-UTR-H-paniculata_contig21038:2386..2387Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21038 2387..2387 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929556.7479851-CDS-H-paniculata_contig21038:2387..25501622929556.7479851-CDS-H-paniculata_contig21038:2387..2550Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21038 2388..2550 +
1691480912.4971206-CDS-H-paniculata_contig21038:2387..25501691480912.4971206-CDS-H-paniculata_contig21038:2387..2550Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21038 2388..2550 +
1622929556.7649968-CDS-H-paniculata_contig21038:3081..31131622929556.7649968-CDS-H-paniculata_contig21038:3081..3113Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21038 3082..3113 +
1691480912.5061305-CDS-H-paniculata_contig21038:3081..31131691480912.5061305-CDS-H-paniculata_contig21038:3081..3113Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21038 3082..3113 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21038.5494.1

>prot_H-paniculata_contig21038.5494.1 ID=prot_H-paniculata_contig21038.5494.1|Name=mRNA_H-paniculata_contig21038.5494.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
MTISRGNISQKTSGSGTSGLFHHLKEKHEKEFTAIDALRSHSTTGKRKRV
DIVSGVSRNQIKDQG
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mRNA from alignment at H-paniculata_contig21038:2387..3113+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21038.5494.1 ID=mRNA_H-paniculata_contig21038.5494.1|Name=mRNA_H-paniculata_contig21038.5494.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=727bp|location=Sequence derived from alignment at H-paniculata_contig21038:2387..3113+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGACGATCAGCCGGGGTAACATCAGCCAGAAGACCTCCGGCAGTGGGA
CGAGTGGCTTGTTCCACCATTTGAAGGAAAAACACGAAAAGGAGTTCACG
GCCATAGACGCTTTGAGGTCGCATAGTACCACTGGGAAGAGGAAGAGAGT
AGATATCGTGTCAGGTGAGAGGTCTGACTGACTAAGCCATGACTTCAGTA
ACGACGGCGTTTAGATGTTTAGACGGCGTGTTTGTTGTTTGTTTTGATGG
TTTGCCGCCCCCGTTTTGTGCACATCTGCTGCTCCTGTGGGCCTCTACAT
GCTCCCATACAGCAGTATGCATTCACGTTTTTTATTTTCAGCCTATTTTT
GCAGCTGATATTTTTTATCAATATATTTGTACCAAAGAGAAAAATATATC
TTTCTCGTTCGTTTTTACTTAGATCTCACTATCGCCCAATACTTGCACCA
CTGCTATACACTGCTGTACACTTGTCGTTATACGTTATACTTGACTGCGG
CAAGTACAAGCGCTCTCGTTGTATTTAGCCTTGATATAAATACGTAAATA
CGAGGACATACAGACGTATGTGTACGTAGCTTTTTTTTTCCCAGGGTAGT
ATTCTTCATGAGATCCTCAAAATTCTCAGAAATTCTCAGCATATCGTTTT
CTCGTTTTCTTCTTTTCCCCACACTTGCGACAACCCGTCGCGCAGGCGTT
AGCAGGAATCAGATAAAAGACCAGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig21038:2387..3113+

>mRNA_H-paniculata_contig21038.5494.1 ID=mRNA_H-paniculata_contig21038.5494.1|Name=mRNA_H-paniculata_contig21038.5494.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig21038:2387..3113+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGATCAGCCGGGGTAACATCAGCCAGAAGACCTCCGGCAGTGGGAC
GAGTGGCTTGTTCCACCATTTGAAGGAAAAACACGAAAAGGAGTTCACGG
CCATAGACGCTTTGAGGTCGCATAGTACCACTGGGAAGAGGAAGAGAGTA
GATATCGTGTCAGATGACGATCAGCCGGGGTAACATCAGCCAGAAGACCT
CCGGCAGTGGGACGAGTGGCTTGTTCCACCATTTGAAGGAAAAACACGAA
AAGGAGTTCACGGCCATAGACGCTTTGAGGTCGCATAGTACCACTGGGAA
GAGGAAGAGAGTAGATATCGTGTCAGGCGTTAGCAGGAATCAGATAAAAG
ACCAGGGGGCGTTAGCAGGAATCAGATAAAAGACCAGGGG
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