mRNA_H-paniculata_contig20994.5471.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20994.5471.1
Unique NamemRNA_H-paniculata_contig20994.5471.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig20994.5471.1 vs. uniprot
Match: A0A2D0N725_9BACT (Uncharacterized protein n=1 Tax=Flavilitoribacter nigricans DSM 23189 = NBRC 102662 TaxID=1122177 RepID=A0A2D0N725_9BACT)

HSP 1 Score: 64.3 bits (155), Expect = 1.430e-10
Identity = 27/47 (57.45%), Postives = 33/47 (70.21%), Query Frame = 1
Query:   13 LYWATGGPEWVNSWDLEADIDKWWGVEINEDEGCVVSLSLENNNLRG 153
            LY +T GP W  SWDL A I+ W+GVE+NE +GCV S+ L  NNL G
Sbjct:  986 LYQSTNGPSWKTSWDLNAPINSWYGVELNE-QGCVTSIQLLGNNLSG 1031          
BLAST of mRNA_H-paniculata_contig20994.5471.1 vs. uniprot
Match: A0A2U2X9J1_9FLAO (Two component regulator three Y domain protein n=1 Tax=Algibacter marinivivus TaxID=2100723 RepID=A0A2U2X9J1_9FLAO)

HSP 1 Score: 63.2 bits (152), Expect = 2.380e-10
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 1
Query:    1 ALHALYWATGGPEWVNSWDLEADIDKWWGVEINEDEGCVVSLSLENNNLRGK 156
            AL ALY AT G EW +SWDL A +DKW+GV+I  D+  VV ++L+ NNL G+
Sbjct:   28 ALIALYNATNGAEWNSSWDLNASVDKWYGVKIENDK--VVEINLQFNNLNGE 77          
BLAST of mRNA_H-paniculata_contig20994.5471.1 vs. uniprot
Match: A0A2K1E1B7_9FLAO (Two component regulator three Y domain protein n=1 Tax=Hanstruepera neustonica TaxID=1445657 RepID=A0A2K1E1B7_9FLAO)

HSP 1 Score: 62.0 bits (149), Expect = 6.200e-10
Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 1
Query:    1 ALHALYWATGGPEWVNSWDLEADIDKWWGVEINEDEGCVVSLSLENNNLRGK--GELG 168
            AL ALY +T G EWVN+WDL A I+ W+GV    D+  VV+L+LE NNL+G    ELG
Sbjct:   28 ALIALYNSTNGDEWVNTWDLNASINTWYGVTTENDQ--VVALNLEFNNLQGSLPEELG 83          
BLAST of mRNA_H-paniculata_contig20994.5471.1 vs. uniprot
Match: UPI001F55DA33 (Two component regulator three Y domain protein n=1 Tax=Aestuariivivens sp. AH-MY3 TaxID=2913554 RepID=UPI001F55DA33)

HSP 1 Score: 62.0 bits (149), Expect = 6.530e-10
Identity = 29/51 (56.86%), Postives = 36/51 (70.59%), Query Frame = 1
Query:    1 ALHALYWATGGPEWVNSWDLEADIDKWWGVEINEDEGCVVSLSLENNNLRG 153
            AL ALY A  G EW  SWDLEA ID W+GV++ +D+  VV L+L  NNL+G
Sbjct:   28 ALIALYKAANGSEWSTSWDLEASIDTWYGVKVQDDK--VVELNLHFNNLQG 76          
BLAST of mRNA_H-paniculata_contig20994.5471.1 vs. uniprot
Match: UPI001BCFDF7F (Two component regulator three Y domain protein n=1 Tax=Flavobacterium sp. CYK-55 TaxID=2835529 RepID=UPI001BCFDF7F)

HSP 1 Score: 60.8 bits (146), Expect = 1.770e-9
Identity = 28/58 (48.28%), Postives = 40/58 (68.97%), Query Frame = 1
Query:    1 ALHALYWATGGPEWVNSWDLEADIDKWWGVEINEDEGCVVSLSLENNNLRGK--GELG 168
            AL  LY +T G +W N WDL A ++KW+GV++N D+  V++L L NNNL G+   E+G
Sbjct:   28 ALVKLYISTNGTQWKNKWDLNAPVNKWFGVKMNGDK--VIALDLSNNNLTGQLPAEIG 83          
BLAST of mRNA_H-paniculata_contig20994.5471.1 vs. uniprot
Match: A0A5D0RBG1_9FLAO (Two component regulator three Y domain protein n=1 Tax=Bizionia myxarmorum TaxID=291186 RepID=A0A5D0RBG1_9FLAO)

HSP 1 Score: 60.5 bits (145), Expect = 1.900e-9
Identity = 31/58 (53.45%), Postives = 38/58 (65.52%), Query Frame = 1
Query:    1 ALHALYWATGGPEWVNSWDLEADIDKWWGVEINEDEGCVVSLSLENNNLRGK--GELG 168
            AL ALY AT G +W N+WDL A I  W+GV +  ++  VV LSLE NNL+G    ELG
Sbjct:   28 ALIALYNATNGAQWTNTWDLNAPIQNWYGVTVKNNQ--VVGLSLEFNNLQGSLPQELG 83          
BLAST of mRNA_H-paniculata_contig20994.5471.1 vs. uniprot
Match: UPI000CF13B4C (Two component regulator three Y domain protein n=2 Tax=Hanstruepera ponticola TaxID=2042995 RepID=UPI000CF13B4C)

HSP 1 Score: 60.5 bits (145), Expect = 2.280e-9
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 1
Query:    1 ALHALYWATGGPEWVNSWDLEADIDKWWGVEINEDEGCVVSLSLENNNLRG 153
            AL ALY AT G +WVN+WDL   I+ W+GV + E++  VV+L+LE NNL+G
Sbjct:   28 ALLALYNATKGDQWVNTWDLSTPINTWYGVTVEENQ--VVALNLEFNNLQG 76          
BLAST of mRNA_H-paniculata_contig20994.5471.1 vs. uniprot
Match: UPI001269B135 (hypothetical protein n=1 Tax=Phaeodactylibacter xiamenensis TaxID=1524460 RepID=UPI001269B135)

HSP 1 Score: 60.1 bits (144), Expect = 3.210e-9
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 1
Query:    1 ALHALYWATGGPEWVNSWDLEADIDKWWGVEINEDEGCVVSLSLENNNLRGKGELGI 171
            AL ALY AT GP W N+WDL   ++ W+GV I + EGCV  + L  N L G+  +G+
Sbjct:  102 ALVALYNATNGPTWTNTWDLSQPMESWFGV-ILDTEGCVQEIDLNYNGLTGEIPVGL 157          
BLAST of mRNA_H-paniculata_contig20994.5471.1 vs. uniprot
Match: A0A2N3T4I5_9FLAO (Putative secreted protein (Por secretion system target) n=1 Tax=Aquimarina sp. MAR_2010_214 TaxID=1250026 RepID=A0A2N3T4I5_9FLAO)

HSP 1 Score: 60.5 bits (145), Expect = 3.240e-9
Identity = 28/51 (54.90%), Postives = 35/51 (68.63%), Query Frame = 1
Query:    1 ALHALYWATGGPEWVNSWDLEADIDKWWGVEINEDEGCVVSLSLENNNLRG 153
            AL ALY AT GP WVN WDL AD+  W GV +++ +  V ++SL NNNL G
Sbjct:  462 ALIALYNATNGPNWVNPWDLTADVSTWHGVFLDDSKN-VQAISLTNNNLTG 511          
BLAST of mRNA_H-paniculata_contig20994.5471.1 vs. uniprot
Match: A0A7C1LEF3_9FLAO (T9SS type A sorting domain-containing protein n=3 Tax=root TaxID=1 RepID=A0A7C1LEF3_9FLAO)

HSP 1 Score: 60.1 bits (144), Expect = 4.430e-9
Identity = 32/60 (53.33%), Postives = 39/60 (65.00%), Query Frame = 1
Query:    1 ALHALYWATGGPEWVNSWDLEA-DIDKWWGVEINEDEGCVVSLSLENNNLRGK--GELGI 171
            AL ALY ATGGP WVN+WDLE  DI+ W+GV +N  EG V  L +  N L G    E+G+
Sbjct:  385 ALIALYNATGGPNWVNTWDLEEQDIENWYGVTLNS-EGRVEYLYITENKLTGTLPPEIGL 443          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20994.5471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D0N725_9BACT1.430e-1057.45Uncharacterized protein n=1 Tax=Flavilitoribacter ... [more]
A0A2U2X9J1_9FLAO2.380e-1055.77Two component regulator three Y domain protein n=1... [more]
A0A2K1E1B7_9FLAO6.200e-1055.17Two component regulator three Y domain protein n=1... [more]
UPI001F55DA336.530e-1056.86Two component regulator three Y domain protein n=1... [more]
UPI001BCFDF7F1.770e-948.28Two component regulator three Y domain protein n=1... [more]
A0A5D0RBG1_9FLAO1.900e-953.45Two component regulator three Y domain protein n=1... [more]
UPI000CF13B4C2.280e-954.90Two component regulator three Y domain protein n=2... [more]
UPI001269B1353.210e-947.37hypothetical protein n=1 Tax=Phaeodactylibacter xi... [more]
A0A2N3T4I5_9FLAO3.240e-954.90Putative secreted protein (Por secretion system ta... [more]
A0A7C1LEF3_9FLAO4.430e-953.33T9SS type A sorting domain-containing protein n=3 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20994contigH-paniculata_contig20994:1848..2024 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.5
Seed ortholog evalue3.1e-07
Seed eggNOG ortholog1353276.JADR01000008_gene882
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.PFAM Leucine Rich Repeat
EggNOG OGs1I0CI@117743,4NI2K@976,COG4886@1,COG4886@2
COG Functional cat.G
Best tax levelFlavobacteriia
Best eggNOG OGNA|NA|NA
Exons1
Model size177
Cds size177
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929553.208748-CDS-H-paniculata_contig20994:1847..20241622929553.208748-CDS-H-paniculata_contig20994:1847..2024Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20994 1848..2024 -
1691480910.857975-CDS-H-paniculata_contig20994:1847..20241691480910.857975-CDS-H-paniculata_contig20994:1847..2024Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20994 1848..2024 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20994.5471.1prot_H-paniculata_contig20994.5471.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20994 1848..2024 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20994.5471.1

>prot_H-paniculata_contig20994.5471.1 ID=prot_H-paniculata_contig20994.5471.1|Name=mRNA_H-paniculata_contig20994.5471.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp
ALHALYWATGGPEWVNSWDLEADIDKWWGVEINEDEGCVVSLSLENNNLR
GKGELGIK*
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mRNA from alignment at H-paniculata_contig20994:1848..2024-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20994.5471.1 ID=mRNA_H-paniculata_contig20994.5471.1|Name=mRNA_H-paniculata_contig20994.5471.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=177bp|location=Sequence derived from alignment at H-paniculata_contig20994:1848..2024- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCACTGCATGCTCTATACTGGGCCACCGGTGGGCCAGAGTGGGTGAACTC TTGGGATTTGGAAGCTGACATAGACAAATGGTGGGGAGTGGAGATAAACG AAGACGAAGGCTGTGTGGTGTCGCTTTCTCTCGAGAATAACAACCTCCGA GGTAAGGGCGAGTTAGGAATCAAGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig20994:1848..2024-

>mRNA_H-paniculata_contig20994.5471.1 ID=mRNA_H-paniculata_contig20994.5471.1|Name=mRNA_H-paniculata_contig20994.5471.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at H-paniculata_contig20994:1848..2024- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCACTGCATGCTCTATACTGGGCCACCGGTGGGCCAGAGTGGGTGAACTC
TTGGGATTTGGAAGCTGACATAGACAAATGGTGGGGAGTGGAGATAAACG
AAGACGAAGGCTGTGTGGTGTCGCTTTCTCTCGAGAATAACAACCTCCGA
GGTAAGGGCGAGTTAGGAATCAAGTAAGCACTGCATGCTCTATACTGGGC
CACCGGTGGGCCAGAGTGGGTGAACTCTTGGGATTTGGAAGCTGACATAG
ACAAATGGTGGGGAGTGGAGATAAACGAAGACGAAGGCTGTGTGGTGTCG
CTTTCTCTCGAGAATAACAACCTCCGAGGTAAGGGCGAGTTAGGAATCAA
GTAA
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