mRNA_H-paniculata_contig2097.5462.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2097.5462.1
Unique NamemRNA_H-paniculata_contig2097.5462.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2097.5462.1 vs. uniprot
Match: A0A6H5JT97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT97_9PHAE)

HSP 1 Score: 311 bits (796), Expect = 4.970e-100
Identity = 215/367 (58.58%), Postives = 243/367 (66.21%), Query Frame = 1
Query:    1 RFAWAIPDERALRIIKHFGPIVEIGSGLGYWAMLLRSRGVDVKAYDKVSGAPAGAKDQSSSNTNRDESHRQGLKKSKADKNTKSDVADVTADARSAETAEESVDPSPVFWTEVAKGGPEVLEEACNERRALFLCYPDDFEDEDESLGLQCLHSFEGDVVIHVGEVFGDSVSMTPGQTPWGRTSSRECQEELAIKFHCILKVPLPRWPHSRDTLTVWKRHSFSAVHYGHDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGPGSNAKKRNPAANGELSDGDDXXXXXXXXXXXGSDGGIEAFFRGEL--------------GSDDGEEDVEGAISYLSDMDIYAFVPSDEEMSVVWAAPSVRFLLDPE 1059
            RFAWAIPDERALRIIKHFGPIVEIGSGLGYWA LLR+RGVD+ AYDKV+G P  A      +   D S  +G   SK D   KS    V  +    +  E   D +P FW +V +GGP+VLEE CNE R+LFLCYPDDFE E ESLGL+CLH+FEGDVVIHVGE+FGDSVSMTPGQ+PWGRT+S+ECQEELA KFHCILKVPLP WPHSRDTLTVWKRHSF ++ Y   XXXXXXXXXXXXXXXXXXXXXXXXXXXXX              + E +               G  GG +A   G+               GSDD    +EG    + D+D+YAFVP DE M    AAP  RFLLD E
Sbjct:   80 RFAWAIPDERALRIIKHFGPIVEIGSGLGYWAKLLRARGVDINAYDKVAGTPDTA------SAAPDSSRTKGKSTSK-DAKVKSAAEGVVKE----DADEGGGDETPSFWIKVNEGGPDVLEEPCNEGRSLFLCYPDDFEGETESLGLRCLHAFEGDVVIHVGELFGDSVSMTPGQSPWGRTTSQECQEELASKFHCILKVPLPSWPHSRDTLTVWKRHSFCSIQYDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDREAN-------------GKGRKGGKKAEGSGKXXXXXXXXXXXXXSSGSDDFGS-IEGLPIGMLDVDMYAFVPEDETMPCAQAAPCARFLLDAE 421          
BLAST of mRNA_H-paniculata_contig2097.5462.1 vs. uniprot
Match: D8LFK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK6_ECTSI)

HSP 1 Score: 316 bits (810), Expect = 2.440e-94
Identity = 207/361 (57.34%), Postives = 232/361 (64.27%), Query Frame = 1
Query:    1 RFAWAIPDERALRIIKHFGPIVEIGSGLGYWAMLLRSRGVDVKAYDKVSGAPAGAKDQSSSNTNRDESHRQGLKKSKADKNTKSDVADVTADARSAETAEESVDPSPVFWTEVAKGGPEVLEEACNERRALFLCYPDDFEDEDESLGLQCLHSFEGDVVIHVGEVFGDSVSMTPGQTPWGRTSSRECQEELAIKFHCILKVPLPRWPHSRDTLTVWKRHSFSAVHYGHDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGPGSNAKKRNPAANGELSDGDDXXXXXXXXXXXGSDGGIEAFF--------RGELGSDDGEEDVEGAISYLSDMDIYAFVPSDEEMSVVWAAPSVRFLLDPE 1059
            RFAWAIPDERALRIIKHFGPIVE+GSGLGYWA LLR+RGVD+  YDKV+G P  A      +   D S  +G   SK  K   +   D   DA      E     +P FW +V +GGP+VLEE CNE R+LFLCYPDDFE E ESLGL+CLH+FEGDVVIHVGE+FGDSVSMTPGQ+PWGRT+S+ECQEELA KFHCILKVPLP WPHSRDTLTVWKRHSF ++ Y  D    X   XXXXXXXXXXXX           PG   K  +P   G   DG  XXXXX   XXX                  R   GSDD    +EG    + D+D+YAFVP DE M    AAP  RFLLD E
Sbjct:   81 RFAWAIPDERALRIIKHFGPIVEVGSGLGYWAKLLRARGVDINPYDKVAGTPDTA------SAAPDSSQTKGKSTSKDAKVKSAAEGDGKEDADEGGGGE-----APSFWIKVNEGGPDVLEEPCNEDRSLFLCYPDDFEGETESLGLRCLHAFEGDVVIHVGELFGDSVSMTPGQSPWGRTTSQECQEELASKFHCILKVPLPSWPHSRDTLTVWKRHSFCSIQYDDDDDSDXNEAXXXXXXXXXXXXAQGKE------PGEKGKNSSPK--GVSGDGHGXXXXXRKGXXXXXXXXXXXXXXXXXXXXXRSSSGSDDFGS-IEGLPIGMLDVDMYAFVPEDERMPCAQAAPCARFLLDAE 421          
BLAST of mRNA_H-paniculata_contig2097.5462.1 vs. uniprot
Match: A0A0P1AKQ6_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AKQ6_PLAHL)

HSP 1 Score: 182 bits (463), Expect = 3.030e-51
Identity = 110/232 (47.41%), Postives = 147/232 (63.36%), Query Frame = 1
Query:    1 RFAWAIPDERALRIIKHFGPIVEIGSGLGYWAMLLRSRGVDVKAYD-KVSGAPAG--AKDQSSSNTNRDESHRQGLKKSKADKNTKSDVADV-TADARSAETA----------EESVDPSPVFWTEVAKGGPEVLEEACNERRALFLCYPDDFEDEDESLGLQCLHSFEGDVVIHVGEVFGDSVSMTPGQTPWGRTSSRECQEELAIKFHCILKVPLPRWPHSRDTLTVWKR 654
            +++WAIPDERAL+IIKH+GPIVE+G+G GYWA LL+ RGVDV AYD +V+G       K     N     + R+ + +  A +N   ++ D+   D ++ ET           E+ V+   V+WT V KG P+ L +  N  RALFLCYPDDFED  ES+ ++ L ++ GD VIHVGE+FG ++ + PG   WGRTSS E Q  LA  +H +L+VPLP W  S DTLTVWKR
Sbjct:   55 KYSWAIPDERALQIIKHYGPIVEMGAGSGYWARLLQLRGVDVIAYDLRVAGEEEENEVKSDVKENGKSAATCREEINED-AQENNGEEILDIGEEDVKNGETDQLNEDEEFEDEQDVEVEQVYWTNVLKGTPKDLHKHTN--RALFLCYPDDFEDSHESMAMKSLCNYLGDTVIHVGELFGQTICL-PGV--WGRTSSEEFQIHLATVYHKVLQVPLPSWHSSIDTLTVWKR 280          
BLAST of mRNA_H-paniculata_contig2097.5462.1 vs. uniprot
Match: A0A1V9YJ57_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YJ57_9STRA)

HSP 1 Score: 181 bits (458), Expect = 3.720e-51
Identity = 96/218 (44.04%), Postives = 128/218 (58.72%), Query Frame = 1
Query:    1 RFAWAIPDERALRIIKHFGPIVEIGSGLGYWAMLLRSRGVDVKAYDKVSGAPAGAKDQSSSNTNRDESHRQGLKKSKADKNTKSDVADVTADARSAETAEESVDPSPVFWTEVAKGGPEVLEEACNERRALFLCYPDDFEDEDESLGLQCLHSFEGDVVIHVGEVFGDSVSMTPGQTPWGRTSSRECQEELAIKFHCILKVPLPRWPHSRDTLTVWKR 654
            +++WAIPDERALRIIKH+GPIVE+G+G GYW  LL+ RGVDVK +D        AKD+S                                        E+  +   + W +V +G PEVL++  + +R L LCYPDDFED +ES+ L+CL+++ GD +IHVGE  G +V +     PWGRTS+ E Q +L+  FH +L+VPLP W  S DTLTVWKR
Sbjct:   60 KYSWAIPDERALRIIKHYGPIVEMGAGSGYWGRLLQLRGVDVKCFDLHVPGTESAKDESDD--------------------------------------EDEAEEERMTWMDVQQGTPEVLKK--HSKRTLLLCYPDDFEDSEESMALECLNNYTGDTIIHVGEWLGQTVCLPE---PWGRTSAPEFQTQLSAVFHKVLQVPLPSWHSSIDTLTVWKR 234          
BLAST of mRNA_H-paniculata_contig2097.5462.1 vs. uniprot
Match: A0A484EEF6_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EEF6_BRELC)

HSP 1 Score: 181 bits (460), Expect = 6.640e-51
Identity = 105/223 (47.09%), Postives = 137/223 (61.43%), Query Frame = 1
Query:    1 RFAWAIPDERALRIIKHFGPIVEIGSGLGYWAMLLRSRGVDVKAYD-KVSGAPAGAKDQSSSNTNRDESHRQGLKKSKADKNTKSDVADVTADARSAETAE----ESVDPSPVFWTEVAKGGPEVLEEACNERRALFLCYPDDFEDEDESLGLQCLHSFEGDVVIHVGEVFGDSVSMTPGQTPWGRTSSRECQEELAIKFHCILKVPLPRWPHSRDTLTVWKR 654
            +++WAIPDERAL+IIK FGPIVE+G+G GYWA LL+ R VD+ AYD +V+G               DE  ++    S  + +  +  A V++D    E  E    E VD   + WT+V KG P+ L +  N  R LFLCYPDDFED  ES+ +  L ++EG  VIHVGE+FG ++ +     PWGRTSS E Q  LA  +H +L+VPLP W  S DTLTVWKR
Sbjct:   56 KYSWAIPDERALQIIKSFGPIVEMGAGNGYWARLLQLRDVDIIAYDHRVAG---------------DEEEKEEKSISGEESDGVAHEASVSSDEEVIEDTENVNEEVVDVEQIIWTDVRKGTPKDLRKHTN--RTLFLCYPDDFEDSQESMAMASLCNYEGSFVIHVGELFGQTICLP---NPWGRTSSEEFQIHLATVYHKVLQVPLPSWHSSIDTLTVWKR 258          
BLAST of mRNA_H-paniculata_contig2097.5462.1 vs. uniprot
Match: A0A024UED4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UED4_9STRA)

HSP 1 Score: 179 bits (454), Expect = 1.940e-50
Identity = 105/220 (47.73%), Postives = 131/220 (59.55%), Query Frame = 1
Query:    1 RFAWAIPDERALRIIKHFGPIVEIGSGLGYWAMLLRSRGVDVKAYD-KVSGAPAGAKDQSSSNTNRDESHRQGLKKSKADKNTKSDVADVTADARSAETAEESVDPSP-VFWTEVAKGGPEVLEEACNERRALFLCYPDDFEDEDESLGLQCLHSFEGDVVIHVGEVFGDSVSMTPGQTPWGRTSSRECQEELAIKFHCILKVPLPRWPHSRDTLTVWKR 654
            +++WAIPDERALRIIKH+GPIVEIG+G GYW  LL+ RGVD+K +D  V G      D+S++                             AD+  A   E  VD SP + W EV +G PEVL +  N  R L LCYPDD+ED DES+   CL+ + G+ VIH+GE+FG ++ +     PWGRTSS E Q  LA  FH IL+VPL  W  S DTLTVWKR
Sbjct:   65 KYSWAIPDERALRIIKHYGPIVEIGAGTGYWGRLLQLRGVDIKCFDLHVPG------DESANG----------------------------ADSDDASDEERDVDDSPRMTWLEVEQGTPEVLTKHKN--RTLLLCYPDDYEDSDESMAEACLNYYTGEYVIHIGELFGHTLCLPE---PWGRTSSPEFQTRLAAVFHKILQVPLHSWHSSVDTLTVWKR 245          
BLAST of mRNA_H-paniculata_contig2097.5462.1 vs. uniprot
Match: A0A329SPF0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SPF0_9STRA)

HSP 1 Score: 180 bits (457), Expect = 5.980e-50
Identity = 109/234 (46.58%), Postives = 138/234 (58.97%), Query Frame = 1
Query:    1 RFAWAIPDERALRIIKHFGPIVEIGSGLGYWAMLLRSRGVDVKAYDKVSGAPAGAKDQSSSNTNRDESHRQGLKKSKADKNTKSDVADVTADARSAETAEES----------------VDPSPVFWTEVAKGGPEVLEEACNERRALFLCYPDDFEDEDESLGLQCLHSFEGDVVIHVGEVFGDSVSMTPGQTPWGRTSSRECQEELAIKFHCILKVPLPRWPHSRDTLTVWKR 654
            +++WAIPDERAL+IIKH+GPIVE+G+G GYWA LL+ RGVDV AYD         K++ S      +S     ++S  D       AD T  +   E  E                  V+   V+WTEV KG P+ L +  +  RALFLCYPDDFED  ES+ +  L ++ GD VIHVGE+FG +V + PG   WGRTSS E Q  LA  +H +L+VPLP W  S DTLTVWKR
Sbjct:   58 KYSWAIPDERALQIIKHYGPIVEMGAGSGYWARLLQLRGVDVVAYDLHVAGDEEEKNEESDEKENGKSAATSGEESHGD-------ADETQVSDGGEADEXXXXXXXXXXXXXXXXXXVEVEQVYWTEVLKGTPKDLRKHAD--RALFLCYPDDFEDSHESMAMASLCNYAGDTVIHVGELFGQTVCL-PGA--WGRTSSEEFQTHLATVYHKVLQVPLPSWHSSIDTLTVWKR 279          
BLAST of mRNA_H-paniculata_contig2097.5462.1 vs. uniprot
Match: W2R2M3_PHYPN (Uncharacterized protein n=9 Tax=Phytophthora parasitica TaxID=4792 RepID=W2R2M3_PHYPN)

HSP 1 Score: 179 bits (454), Expect = 1.660e-49
Identity = 108/238 (45.38%), Postives = 138/238 (57.98%), Query Frame = 1
Query:    1 RFAWAIPDERALRIIKHFGPIVEIGSGLGYWAMLLRSRGVDVKAYDKVSGAPAGAKDQSSSNTNRDESHRQGLKKSKADKNTKSDVADVTADARSAETAEE--------------------SVDPSPVFWTEVAKGGPEVLEEACNERRALFLCYPDDFEDEDESLGLQCLHSFEGDVVIHVGEVFGDSVSMTPGQTPWGRTSSRECQEELAIKFHCILKVPLPRWPHSRDTLTVWKR 654
            +++WAIPDERAL+IIKH+GPIVE+G+G GYWA LL+ R VDV AYD       G K+  S     DE  R+  K +     T  + +   A+       EE                     V+   V+WTEV KG P+ L +  +  RALFLCYPDDFED  ES+ +  L ++ GD VIH+GE+FG +V + PG   WGRTSS E Q  LA  +H +L+VPLP W  S DTLTVWKR
Sbjct:   58 KYSWAIPDERALQIIKHYGPIVEMGAGSGYWARLLQLRSVDVVAYDLHVAGDEGEKEDES-----DEKERENAKIAA----TSGEESHGDAEEAQGSGGEEXXXXXXXXXXXXXXXXXXXXEVEVEQVYWTEVLKGTPKDLRKHAD--RALFLCYPDDFEDSHESMAMASLCNYAGDTVIHIGELFGQTVCL-PGA--WGRTSSEEFQTHLAAVYHKVLQVPLPSWHSSIDTLTVWKR 281          
BLAST of mRNA_H-paniculata_contig2097.5462.1 vs. uniprot
Match: A0A1V9YVH9_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YVH9_9STRA)

HSP 1 Score: 176 bits (445), Expect = 3.010e-49
Identity = 100/219 (45.66%), Postives = 127/219 (57.99%), Query Frame = 1
Query:    1 RFAWAIPDERALRIIKHFGPIVEIGSGLGYWAMLLRSRGVDVKAYD-KVSGAPAGAKDQSSSNTNRDESHRQGLKKSKADKNTKSDVADVTADARSAETAEESVDPSPVFWTEVAKGGPEVLEEACNERRALFLCYPDDFEDEDESLGLQCLHSFEGDVVIHVGEVFGDSVSMTPGQTPWGRTSSRECQEELAIKFHCILKVPLPRWPHSRDTLTVWKR 654
            +++WAIPDERALRIIKH+GPIVE+G+G GYW  LL+ RGVD+K +D  V G   G                              DV+D        +  +E V    + W EV +G PEVL E  +  R L LCYPDDFED +ES+ L+CL ++ GD +IH+GE  G +V +     PWGRTS+ E Q  LA  FH +L+VPLP W  S DTLTVWKR
Sbjct:   61 KYSWAIPDERALRIIKHYGPIVEMGAGSGYWGRLLQLRGVDIKCFDLHVPGEEKG------------------------------DVSDE-------DDEDEQVR---MTWMEVEQGTPEVLPEYKD--RTLLLCYPDDFEDSEESMALECLDNYTGDTIIHIGEWLGQTVCLPE---PWGRTSAPEFQTRLAAVFHKVLQVPLPSWHSSMDTLTVWKR 234          
BLAST of mRNA_H-paniculata_contig2097.5462.1 vs. uniprot
Match: A0A833SKQ9_PHYIN (Uncharacterized protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833SKQ9_PHYIN)

HSP 1 Score: 176 bits (445), Expect = 3.500e-48
Identity = 108/233 (46.35%), Postives = 138/233 (59.23%), Query Frame = 1
Query:    1 RFAWAIPDERALRIIKHFGPIVEIGSGLGYWAMLLRSRGVDVKAYDKVSGAPAGAKDQS----------SSNTNRDESH-----RQGLKKSKADKNTKSDVADVTADARSAETAEESVDPSPVFWTEVAKGGPEVLEEACNERRALFLCYPDDFEDEDESLGLQCLHSFEGDVVIHVGEVFGDSVSMTPGQTPWGRTSSRECQEELAIKFHCILKVPLPRWPHSRDTLTVWKR 654
            +++WAIPDERAL+IIKH+GPIVE+G+G GYWA LL+ RGVDV AYD         K+Q           ++ T+ +ESH      QG    +AD                       V+   V+WT+V KG P+ L +  +  RALFLCYPDDFED  ES+ +  L ++ GD VIHVGE+FG +V + PG   WGRTSS E Q  LA  +H +L+VPLP W  S DTLTVWKR
Sbjct:   58 KYSWAIPDERALQIIKHYGPIVEMGAGSGYWARLLQLRGVDVVAYDLHVAGEEEEKEQEXXXXXXXNGKTAATSGEESHGDAEETQGSGGEEADXX----XXXXXXXXXXXXXXXXXVEVEQVYWTDVLKGTPKDLRKHAD--RALFLCYPDDFEDSHESMAMASLCNYAGDTVIHVGELFGQTVCL-PGA--WGRTSSEEFQTHLATVYHKVLQVPLPSWHSSIDTLTVWKR 281          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2097.5462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JT97_9PHAE4.970e-10058.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFK6_ECTSI2.440e-9457.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0P1AKQ6_PLAHL3.030e-5147.41Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
A0A1V9YJ57_9STRA3.720e-5144.04Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A484EEF6_BRELC6.640e-5147.09Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A024UED4_9STRA1.940e-5047.73Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A329SPF0_9STRA5.980e-5046.58Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
W2R2M3_PHYPN1.660e-4945.38Uncharacterized protein n=9 Tax=Phytophthora paras... [more]
A0A1V9YVH9_9STRA3.010e-4945.66Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A833SKQ9_PHYIN3.500e-4846.35Uncharacterized protein n=1 Tax=Phytophthora infes... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2097contigH-paniculata_contig2097:822..5067 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score322.8
Seed ortholog evalue2e-85
Seed eggNOG ortholog2880.D8LFK6
Hectar predicted targeting categoryother localisation
EggNOG OGs29WS3@1,2RXQ6@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1065
Cds size1065
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2097.5462.1prot_H-paniculata_contig2097.5462.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2097 822..5067 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929552.0804017-CDS-H-paniculata_contig2097:821..8901622929552.0804017-CDS-H-paniculata_contig2097:821..890Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2097 822..890 +
1691480910.5166564-CDS-H-paniculata_contig2097:821..8901691480910.5166564-CDS-H-paniculata_contig2097:821..890Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2097 822..890 +
1622929552.0994017-CDS-H-paniculata_contig2097:1355..16221622929552.0994017-CDS-H-paniculata_contig2097:1355..1622Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2097 1356..1622 +
1691480910.528276-CDS-H-paniculata_contig2097:1355..16221691480910.528276-CDS-H-paniculata_contig2097:1355..1622Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2097 1356..1622 +
1622929552.1120763-CDS-H-paniculata_contig2097:3018..31561622929552.1120763-CDS-H-paniculata_contig2097:3018..3156Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2097 3019..3156 +
1691480910.5374925-CDS-H-paniculata_contig2097:3018..31561691480910.5374925-CDS-H-paniculata_contig2097:3018..3156Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2097 3019..3156 +
1622929552.1262307-CDS-H-paniculata_contig2097:3900..40261622929552.1262307-CDS-H-paniculata_contig2097:3900..4026Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2097 3901..4026 +
1691480910.546839-CDS-H-paniculata_contig2097:3900..40261691480910.546839-CDS-H-paniculata_contig2097:3900..4026Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2097 3901..4026 +
1622929552.1437495-CDS-H-paniculata_contig2097:4509..46561622929552.1437495-CDS-H-paniculata_contig2097:4509..4656Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2097 4510..4656 +
1691480910.556604-CDS-H-paniculata_contig2097:4509..46561691480910.556604-CDS-H-paniculata_contig2097:4509..4656Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2097 4510..4656 +
1622929552.3299382-CDS-H-paniculata_contig2097:4749..50671622929552.3299382-CDS-H-paniculata_contig2097:4749..5067Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2097 4750..5067 +
1691480910.5657024-CDS-H-paniculata_contig2097:4749..50671691480910.5657024-CDS-H-paniculata_contig2097:4749..5067Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2097 4750..5067 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2097.5462.1

>prot_H-paniculata_contig2097.5462.1 ID=prot_H-paniculata_contig2097.5462.1|Name=mRNA_H-paniculata_contig2097.5462.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=355bp
RFAWAIPDERALRIIKHFGPIVEIGSGLGYWAMLLRSRGVDVKAYDKVSG
APAGAKDQSSSNTNRDESHRQGLKKSKADKNTKSDVADVTADARSAETAE
ESVDPSPVFWTEVAKGGPEVLEEACNERRALFLCYPDDFEDEDESLGLQC
LHSFEGDVVIHVGEVFGDSVSMTPGQTPWGRTSSRECQEELAIKFHCILK
VPLPRWPHSRDTLTVWKRHSFSAVHYGHDDEDDDDDGDDDDESNKSSDED
DETKKDSSTGPGSNAKKRNPAANGELSDGDDDGSSGDEEDSSGSDGGIEA
FFRGELGSDDGEEDVEGAISYLSDMDIYAFVPSDEEMSVVWAAPSVRFLL
DPET*
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mRNA from alignment at H-paniculata_contig2097:822..5067+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2097.5462.1 ID=mRNA_H-paniculata_contig2097.5462.1|Name=mRNA_H-paniculata_contig2097.5462.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4246bp|location=Sequence derived from alignment at H-paniculata_contig2097:822..5067+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTTTGCGTGGGCGATACCCGATGAGCGTGCGTTGAGGATCATCAAGCA CTTCGGTCCGATAGTCGAGGTTAGCGTTGTTTTTTTTCACTCTTTTTTAC TTCTACAGGGGTATATGACCATTATTGTTTTATCGGTTACGTAACGGTTG AAGGTTGTAGCATTATCAGCTGGTAACGTCTAGATTTCGCCTCCTCCTGT CGAGTAGATGATCAATCCCGTCTCCGTATCATTTCGTATGGATTATGTTG TCCTGGTTTCACCCTGTGTCTGGTTGGATCCTTTATTTTTCATCTTAGGT CATACCGACCGTTTCCGGTGTATCACGCTGTGCCGGGCGATCACTGTCGA GCCGATAAACAATACTACACCTGTTGTATGATAGCTAAGTGCACAATGGC ACAGCCAGCGCAATCAAGTTTCTTGTATATTCGCAGTGATCGCGAAAAAA AAAAAGGTGAGACAACGCCACCACCCATGCTCTGAAATATACGCGGCATG TTTACAACCCTGTCATACTCATCATGATCCACAGATTGGGAGTGGGCTAG GCTACTGGGCAATGCTCTTGCGTTCGCGAGGTGTAGATGTCAAGGCGTAC GACAAAGTGTCGGGCGCGCCGGCGGGGGCTAAGGACCAGTCCTCGTCCAA CACCAATCGCGATGAATCTCATCGTCAGGGGCTAAAGAAGAGCAAAGCTG ACAAAAATACCAAATCAGACGTGGCAGACGTGACGGCCGACGCGAGATCC GCGGAAACTGCAGAGGAGAGCGTGGATCCATCTCCTGTTTTCTGGACAGA GGTCGGTGCTGAGTACTGGGTACATAGCGGCAGAGTTTTTAGTTTCAAGT TTCCACGTTGTTGAGAGCTTTTCATTAGAGCAGTAAAGTCTCAGAGAACC GAATGCCTCGACCGGCTGGAGTTCAGACAGAACCAACCACGAACCGGTTC TACGATTGAGAACTCAAATTGAACGAACCCTAACGCGAAGCGGTTCCGTT TTTCTCGTCGTTGGTGAAATTCGTGTACAATGTCGGTAATGATAAGAGCC TTTTTTGTGTGTGTGGACCTGGCGGGGGGGCATGCGGGCTGCTCTCCGGA AGTGGGGATCAATTGTTGAGGATCAAAATGAAAGGAGTTCGAGGAGTGAC TCAAAGCTTCTGCTGCCGCTGCTGCTACTACTACTACTACTAGTGTGTAA CTTTGATCCTGTTTGTGTTGTGTGCGATGCTGCTGGTCACGACACTCTCA TATAGTTGATTTCAGCCATAAGAGTGTAAGGACGTGAGGTGCTGCTTACA ATGGAAGTGACCGAAAAAACCCGCTGGGATGGGCGCTCAGGAGGTAAAAC ATGCGGGTGCGTTTTGTGGTGGGAGATCTTGCTTGATGCTACTTGGAACC AAGTAGGAATGTCATATATCGCTCATCCTGATACCCCTCCTGTTATCTAC GTCACACTACTTGGGACCAAGTTGGATGGAAGGAAGGAAGGGAGGCAACG AAACGAAAAAGATCTGGGTCTCCTGAAGCAAAAAACGGAAAACGCTTGGA GGTGGCCAATCAACCTTTTTTTCTTTTCCAACAATCGTCATGTTTTATAA TATCGCACTTTTGACATTTTATATTTTACTATTTTTTACTGTTTAAAAAA AAAAAATCAAAACACAATTTTCAGTTTTTCTCCCCTCCCGATGCACATGG TTGAAAGTCAATTTTAGGAATTTAGATCTTGACCGCAAGAAACGTTGGAA GCGATTCAGGAGTGGTAGACAAGGATGACGACGATATATTCAAGTGTGAC TGCGGTAAGTGTGTGCGAGAAATGAATCCACACCATGGGAGAATACCCCC TATATATAAAAAAGAGAGATAAATTTATATGAGTGGATTAAGGAAAGTCG AACGATGCAACATAGGGGAAGTTAAATCCTGGGGTTGCGAAATGGTTGCT ATTGCGGTTCTTGGATATCGAAAGTGGCCTGAATACGCAAGGATTGAAGT AGATAATACAAAAGTAAAATACATTTGGTAACCTAGGGAAGAGCGATTGG TCATTATTCATTGGAAATCGCTCTCATAAAGAACAAAGCTCCGTCCTCCC GAGGACGCGTGGTCACTGGTCTAACAAGTGCGATATGCGAAACATTAGTA CCTTCTCCACTCCGGGTGCTCTCTCTCTCTTTGTGGGTGCTATGAAGGTC GCGAAGGGTGGTCCGGAAGTGCTGGAAGAAGCATGCAACGAACGGAGGGC GCTCTTTTTGTGCTACCCTGACGATTTTGAGGACGAGGATGAAAGCCTGG GGCTCCAATGTCTGCACTCGTTTGAAGGGGACGTGGTGAGCGTCTGTTGG GTCGGCTGCTTTTGACTATTCGTGGATTACTAGCTTTCTGACCGCCGGAT CAGCTGTGCAGGCAGGGCTTGTCTTTAGATGTTTCGCCATTATTTCTCTC CACACTGAATTGGTTCTGGTGAATAACTAACGCCTCAAATAGCCCAATGT TGCCCTCGCTTTTCTTCGCCAAAAATATGCTCACCAGGTTTTGTAGATGT GCTTGGTGCTCTGTAGACGTAGATTTTGATTGTCATGGTCATTATCTACG ACTATTTGATTTCGATGGAAACTTTCATGTTTTGGTTGTTTCGACGCCCG GTCTCCGAAGGGGTACTTTGCTGTTGAGGACAGCATAAGCTTATTTGCTA TATTGATTACAAGTCCATTTTGTGCAGCTGGATTTTTCGTGTATATTTTG TTATGAGGGGACAAGTCGTGCCATGTAAAACTCTCGAAACCCTCTTGAAT TAAATTTATCCAGTATATAATTTTCGCTCCGTGTGCCTTGGAAATCACAG TACAGTTTACACACAAGCAACGAAGAGGATGGTTATCTATCGTGTCTTTC CGCCCCTGGATGACCTTTCAATCGTCATGTTCCGACCCTTTTTTAATCTG AGATAGAAGCCTTTGTGCGAAATGCGGGGAACCCCCTATGTAAGGAAGAT TAGACATCCGGTCAATTCTTGCTGTCCCCCGCCCCCACGCTACCCGTTCC TTCGCCTTCAACTGTTGATGATGATTCAGGTTATCCATGTCGGGGAAGTC TTCGGAGACTCGGTGAGCATGACTCCCGGCCAGACGCCATGGGGACGGAC AAGCTCTAGGGAGTGCCAGGAGGAATTGGCGATCAAGTTCCACTGCATCC TGAAGGTTAGTTGTTGCCATTATTAGTACAGTGTATTGACTCCGCGTGGA GAAAAACAAGCATGTTATATATGTATGATTTTGTCACGTTTTGTGATGAT CAAACTACTTGTATACAAACAGATGCGCTATTAGTTGTAGCGTGTTCATG TTCGTATAGTATTGTTGTATGTATCCAAAAATGTGACAAGTCGGTATTTT CCTGAGCGGTTCAAAGTTTGATTCGATTTTCCTAGTCGAGAAACAGCATC CCGCACCGTCTACTAACTAAATATCCTGTCTATCTAATGACACATGCCGA GGAGATCTTCACAGCGACCCGAACTTGGGGGTCACAAGAAGCGTAGCTTT GGATAAGATCGGTTTGTCAGTATCGCCACCTTCGGAGGAGGGTTCGGGAT TTTTTTTTTCAAGTCAGGTTGACAACCTGGGACGACCTACCTACCCGTCT TTATTTCTTCTGTTTGGGGCGTGTTTTGTCGGGCACAGGTACCCCTTCCG AGGTGGCCGCATTCCAGGGACACGCTGACGGTCTGGAAGAGACATTCTTT TTCGGCCGTACACTACGGCCATGACGATGAAGATGACGACGACGATGGTG ATGATGACGATGAATCCAATAAGAGCAGCGATGAAGTTTGTGATGGTAAA AGCGAAACCGAGGCAACCAAGGACCACAGCAACGACCAAAAGAAAAAGAA ACATAGTAAGAAAAAAGAGAAGCTGGAGGATGACGAAACCAAAAAAGACA GCAGTACTGGTCCTGGTAGTAATGCAAAAAAACGAAATCCCGCGGCAAAT GGCGAGCTTAGCGATGGTGATGACGATGGCAGTAGTGGAGACGAGGAAGA CAGTAGTGGCTCTGACGGTGGTATAGAGGCGTTTTTTCGCGGAGAATTAG GCTCTGACGACGGGGAAGAGGATGTAGAGGGTGCGATCTCGTATTTGTCT GATATGGACATATATGCCTTCGTGCCTTCCGACGAGGAGATGTCGGTTGT GTGGGCTGCGCCCTCTGTACGGTTTTTGCTTGATCCGGAAACTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig2097:822..5067+

>mRNA_H-paniculata_contig2097.5462.1 ID=mRNA_H-paniculata_contig2097.5462.1|Name=mRNA_H-paniculata_contig2097.5462.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2130bp|location=Sequence derived from alignment at H-paniculata_contig2097:822..5067+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTTTGCGTGGGCGATACCCGATGAGCGTGCGTTGAGGATCATCAAGCA
CTTCGGTCCGATAGTCGAGAGGTTTGCGTGGGCGATACCCGATGAGCGTG
CGTTGAGGATCATCAAGCACTTCGGTCCGATAGTCGAGATTGGGAGTGGG
CTAGGCTACTGGGCAATGCTCTTGCGTTCGCGAGGTGTAGATGTCAAGGC
GTACGACAAAGTGTCGGGCGCGCCGGCGGGGGCTAAGGACCAGTCCTCGT
CCAACACCAATCGCGATGAATCTCATCGTCAGGGGCTAAAGAAGAGCAAA
GCTGACAAAAATACCAAATCAGACGTGGCAGACGTGACGGCCGACGCGAG
ATCCGCGGAAACTGCAGAGGAGAGCGTGGATCCATCTCCTGTTTTCTGGA
CAGAGATTGGGAGTGGGCTAGGCTACTGGGCAATGCTCTTGCGTTCGCGA
GGTGTAGATGTCAAGGCGTACGACAAAGTGTCGGGCGCGCCGGCGGGGGC
TAAGGACCAGTCCTCGTCCAACACCAATCGCGATGAATCTCATCGTCAGG
GGCTAAAGAAGAGCAAAGCTGACAAAAATACCAAATCAGACGTGGCAGAC
GTGACGGCCGACGCGAGATCCGCGGAAACTGCAGAGGAGAGCGTGGATCC
ATCTCCTGTTTTCTGGACAGAGGTCGCGAAGGGTGGTCCGGAAGTGCTGG
AAGAAGCATGCAACGAACGGAGGGCGCTCTTTTTGTGCTACCCTGACGAT
TTTGAGGACGAGGATGAAAGCCTGGGGCTCCAATGTCTGCACTCGTTTGA
AGGGGACGTGGTCGCGAAGGGTGGTCCGGAAGTGCTGGAAGAAGCATGCA
ACGAACGGAGGGCGCTCTTTTTGTGCTACCCTGACGATTTTGAGGACGAG
GATGAAAGCCTGGGGCTCCAATGTCTGCACTCGTTTGAAGGGGACGTGGT
TATCCATGTCGGGGAAGTCTTCGGAGACTCGGTGAGCATGACTCCCGGCC
AGACGCCATGGGGACGGACAAGCTCTAGGGAGTGCCAGGAGGAATTGGCG
ATCAAGTTCCACTGCATCCTGAAGGTTATCCATGTCGGGGAAGTCTTCGG
AGACTCGGTGAGCATGACTCCCGGCCAGACGCCATGGGGACGGACAAGCT
CTAGGGAGTGCCAGGAGGAATTGGCGATCAAGTTCCACTGCATCCTGAAG
GTACCCCTTCCGAGGTGGCCGCATTCCAGGGACACGCTGACGGTCTGGAA
GAGACATTCTTTTTCGGCCGTACACTACGGCCATGACGATGAAGATGACG
ACGACGATGGTGATGATGACGATGAATCCAATAAGAGCAGCGATGAAGTA
CCCCTTCCGAGGTGGCCGCATTCCAGGGACACGCTGACGGTCTGGAAGAG
ACATTCTTTTTCGGCCGTACACTACGGCCATGACGATGAAGATGACGACG
ACGATGGTGATGATGACGATGAATCCAATAAGAGCAGCGATGAAGATGAC
GAAACCAAAAAAGACAGCAGTACTGGTCCTGGTAGTAATGCAAAAAAACG
AAATCCCGCGGCAAATGGCGAGCTTAGCGATGGTGATGACGATGGCAGTA
GTGGAGACGAGGAAGACAGTAGTGGCTCTGACGGTGGTATAGAGGCGTTT
TTTCGCGGAGAATTAGGCTCTGACGACGGGGAAGAGGATGTAGAGGGTGC
GATCTCGTATTTGTCTGATATGGACATATATGCCTTCGTGCCTTCCGACG
AGGAGATGTCGGTTGTGTGGGCTGCGCCCTCTGTACGGTTTTTGCTTGAT
CCGGAAACTTGAGATGACGAAACCAAAAAAGACAGCAGTACTGGTCCTGG
TAGTAATGCAAAAAAACGAAATCCCGCGGCAAATGGCGAGCTTAGCGATG
GTGATGACGATGGCAGTAGTGGAGACGAGGAAGACAGTAGTGGCTCTGAC
GGTGGTATAGAGGCGTTTTTTCGCGGAGAATTAGGCTCTGACGACGGGGA
AGAGGATGTAGAGGGTGCGATCTCGTATTTGTCTGATATGGACATATATG
CCTTCGTGCCTTCCGACGAGGAGATGTCGGTTGTGTGGGCTGCGCCCTCT
GTACGGTTTTTGCTTGATCCGGAAACTTGA
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