mRNA_H-paniculata_contig20952.5458.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20952.5458.1
Unique NamemRNA_H-paniculata_contig20952.5458.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig20952.5458.1 vs. uniprot
Match: D7FTD7_ECTSI (WSC domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD7_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 4.110e-35
Identity = 79/167 (47.31%), Postives = 102/167 (61.08%), Query Frame = 2
Query:   41 MTTAVCAGICEGSKYFATQYSKECFCSKPGDEPTELGPAS-CTMACAGDPFDTCGGSLAMSLYEF--ESGAGGGGTGGGYLGCYVDKGGDRIMAEKYVDSE-MTVELCDTVCSGLSYYGLQYGKECWCGGASTDYDKHSGLPNCNFACGGDSSQTCGGRDAMSVYQY 529
            MTT +C   C GS YFATQY +EC+C     +    G ++ CT ACAGD   TCGG  A ++Y +  ES A        ++GCY D+ G RIM     DS  M++E+C+  C G +Y+GLQYG+EC+CGG+STD  +H     CN+ C GDS Q CGG  AMSVY Y
Sbjct:  229 MTTELCELTCLGSTYFATQYGRECWCGSADMDYALHGESTDCTYACAGDADQTCGGFDAANVYSYTDESTAIS-----AFVGCYQDESGSRIMELALTDSSSMSMEMCEAKCRGNTYFGLQYGRECFCGGSSTDLLEHGESSACNYECPGDSDQVCGGFYAMSVYSY 390          
BLAST of mRNA_H-paniculata_contig20952.5458.1 vs. uniprot
Match: D8LEL0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEL0_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 4.500e-34
Identity = 75/171 (43.86%), Postives = 98/171 (57.31%), Query Frame = 2
Query:   23 VKGSTDMTTAVCAGICEGSKYFATQYSKECFCSKPGDEPTELGPAS-CTMACAGDPFDTCGGSLAMSLYEFESGAGGGGTGGGYLGCYVDKGGDRIMAEKYVD-SEMTVELCDTVCSGLSYYGLQYGKECWCGGASTDYDKHSGLPNCNFACGGDSSQTCGGRDAMSVYQY 529
            V   + MTT +C   C GS YFATQY +EC+C   G +    G ++ CT  C+GD    CGG  A ++Y F        +    +GCY D+   RIM     D S MT+E+C+  CSG +Y+G+QYG EC+CGG STD  +H     C++ C GDS Q CGG  AMSVY Y
Sbjct:  112 VLSDSSMTTELCELTCLGSTYFATQYGRECWCGSDGADYALHGESTECTYPCSGDADQLCGGFDAANVYLFTGET----STSSLVGCYQDESDARIMEFALTDTSSMTMEMCEAECSGNTYFGMQYGTECFCGGESTDLLQHGESTACDYECPGDSEQVCGGFYAMSVYSY 278          
BLAST of mRNA_H-paniculata_contig20952.5458.1 vs. uniprot
Match: D8LNS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNS1_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 5.450e-34
Identity = 78/195 (40.00%), Postives = 105/195 (53.85%), Query Frame = 2
Query:   32 STDMTTAVCAGICEGSKYFATQYSKECFCSKPGDEPTELGPAS-CTMACAGDPFDTCGGSLAMSLYEFE--------SGAGGGGTGGGYLGCYVDKGGDRIMAEKYVDSE-MTVELCDTVCSGLSYYGLQYGKECWCGGASTDYDKHSGLPNCNFACGGDSSQTCGGRDAMSVYQY*KQDKFS*YIVVEIYVSDQ 586
            S+ MTT +C   C GS YF+TQY +EC+C   G +  + G ++ CT  C G+P +TCGG  A S+Y +         S          Y+GC+ D   DRIM     +S  MT ELC+  C+G SY+  QYG+ECWCG A TDY+KH     C + C G+  +TCGG  A SVY Y   +    +  V  +  DQ
Sbjct:  147 SSSMTTELCELTCAGSYYFSTQYGRECWCGPAGTDYEKHGESTECTYECPGNPDETCGGFYAASVYAYSTVEPTPTFS----------YVGCFQDDQ-DRIMELALTESSSMTTELCELTCAGSSYFSTQYGRECWCGPAGTDYEKHGESTECTYECPGNPDETCGGFYAASVYAYSTVEPTPTFSYVGCFQDDQ 330          
BLAST of mRNA_H-paniculata_contig20952.5458.1 vs. uniprot
Match: D7FUE6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE6_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 8.310e-33
Identity = 75/165 (45.45%), Postives = 100/165 (60.61%), Query Frame = 2
Query:   41 MTTAVCAGICEGSKYFATQYSKECFCSKPGDEPTELGPAS-CTMACAGDPFDTCGGSLAMSLYEFESGAGGGGTGGGYLGCYVDKGGDRIMAEKYVDSE-MTVELCDTVCSGLSYYGLQYGKECWCGGASTDYDKHSGLPNCNFACGGDSSQTCGGRDAMSVYQY 529
            MTT +C   C G+ YFATQY +EC+C   G E    G ++ CT ACAGD   TCGG  A ++Y +   +        ++GCY D+   RIM     DS  MT E+C+  C+G +++G+QYG+EC+CGG+STD  +H     CN+ C GDS Q CGG  AMSVY Y
Sbjct:  656 MTTELCEQTCLGNTYFATQYGRECWCGSAGVEYALHGESTDCTYACAGDADQTCGGFDAANVYRYTDEST---PTSSFVGCYQDESDARIMELALTDSSSMTKEMCEAECTGNTFFGMQYGRECFCGGSSTDLLEHGESSACNYECPGDSDQVCGGFYAMSVYSY 817          
BLAST of mRNA_H-paniculata_contig20952.5458.1 vs. uniprot
Match: D7FRS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRS2_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 2.200e-32
Identity = 75/171 (43.86%), Postives = 102/171 (59.65%), Query Frame = 2
Query:   41 MTTAVCAGICEGSKYFATQYSKECFCSKPGDEPTELGPAS-CTMACAGDPFDTCGGSLAMSLYEFESGAGGGGTGGG------YLGCYVDKGGDRIMAEKYVDSE-MTVELCDTVCSGLSYYGLQYGKECWCGGASTDYDKHSGLPNCNFACGGDSSQTCGGRDAMSVYQY 529
            MTT +C   C G+ +FATQY +EC+C   G + T  G ++ CT ACAGD   TCGG  A ++Y +        TG        ++GCY D+   RIM     DS  MT E+C+  C+G +Y+G+QYG+EC+CGG+STD  +H     C++ C GDS + CGG  AMSVY Y
Sbjct:  351 MTTELCEQTCLGNTFFATQYGRECWCGSAGADYTLHGESTDCTYACAGDADQTCGGFDAANVYLY--------TGDDALSTSTFVGCYQDESDARIMELALTDSSSMTKEMCEAECTGSTYFGMQYGRECFCGGSSTDLLQHGESTACDYECPGDSDELCGGFYAMSVYSY 513          
BLAST of mRNA_H-paniculata_contig20952.5458.1 vs. uniprot
Match: D7FRS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRS1_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 5.870e-32
Identity = 76/165 (46.06%), Postives = 99/165 (60.00%), Query Frame = 2
Query:   41 MTTAVCAGICEGSKYFATQYSKECFCSKPGDEPTELGP-ASCTMACAGDPFDTCGGSLAMSLYEFESGAGGGGTGGGYLGCYVDKGGDRIMAEKYVDSE-MTVELCDTVCSGLSYYGLQYGKECWCGGASTDYDKHSGLPNCNFACGGDSSQTCGGRDAMSVYQY 529
            MTT +C   C G+ YFATQY +EC+C   G +    G  A CT ACAGD   TCGG  A ++Y +        T   ++GCY D+   RIM     DS  MT E C+  C+G +Y+G+QYG+EC+CGG+STD  +H    +C++ C GDS Q CGG  AMSVY Y
Sbjct:  766 MTTELCEQTCLGNTYFATQYGRECWCGSAGADYILHGESADCTYACAGDADQTCGGFDAANVYLYTGDDVP--TTSSFVGCYQDESDARIMELALTDSSSMTKERCEAECTGNTYFGMQYGRECFCGGSSTDLLQHGESTSCDYECPGDSDQVCGGFYAMSVYSY 928          
BLAST of mRNA_H-paniculata_contig20952.5458.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 1.600e-30
Identity = 77/199 (38.69%), Postives = 105/199 (52.76%), Query Frame = 2
Query:    2 RVLTGTSVKG-STDMTTAVCAGICEGSKYFATQYSKECFCSKPGDEPTELGPAS-CTMACAGDPFDTCGGSLAMSLYEF--------------------ESGAGGGGTGGGYLGCYVDKGGDRIMAEKY---VDSEMTVELCDTVCSGLSYYGLQYGKECWCGGASTDYDKHSGLPNCNFACGGDSSQTCGGRDAMSVY 523
            RVL+G S+   ++ MTTA CA  CEGS YF  Q+  ECFCS  GD P ELG +  C MAC+GD  + CGGS A+ +YE+                    ES           +GC+VD   DR+++      ++S MT   C   C G +Y+G +Y  EC+C  +    D+     NC+  C GDSS+TCGG +A+ VY
Sbjct:  189 RVLSGDSMMSVNSVMTTAYCADFCEGSDYFGVQFGYECFCSSSGDTPDELGESEDCEMACSGDSSEICGGSYAIQVYEYSDXXXXXXXXXXXXXXXXXYES-----------VGCFVDDSSDRVLSGDSMLSINSVMTAAYCADFCEGSTYFGTEYAFECFCSSSGDSPDELGEASNCDMTCSGDSSETCGGFNAIQVY 376          
BLAST of mRNA_H-paniculata_contig20952.5458.1 vs. uniprot
Match: A0A8E2JB36_9PEZI (WSC-domain-containing protein n=1 Tax=Lepidopterella palustris CBS 459.81 TaxID=1314670 RepID=A0A8E2JB36_9PEZI)

HSP 1 Score: 120 bits (302), Expect = 6.020e-28
Identity = 61/167 (36.53%), Postives = 91/167 (54.49%), Query Frame = 2
Query:   41 MTTAVCAGICEGSKYFATQYSKECFCSKPGDEPTELGPAS-CTMACAGDPFDTCGGSLAMSLYEFESGAGGGGT----GGGYLGCYVDKGGDRIMAEKYV-DSEMTVELCDTVCSGLSYYGLQYGKECWCGGASTDYDKHSGLPNCNFACGGDSSQTCGGRDAMSVY 523
            M+   CA  C G  YF  +Y  EC+C      PT   P S C  ACAG+  + CG    M+L+E  +   G G     G  Y GC+ D  G R++AE+Y  D+ MTVE C T C+G +Y+G +YG +C+CG +  +    +   +C+F C G+S + CG  + +++Y
Sbjct:    1 MSYETCASYCSGYNYFGVEYGDECYCGDNFTNPTTAAPESDCYFACAGNSSEVCGAGNRMNLFESITVHTGPGNPTIAGYTYAGCHTDSVGARVLAEQYTYDNAMTVEECATFCAGYTYFGTEYGTQCFCGNSFANPTSEAAETDCSFLCPGNSQEYCGAGNRLTMY 167          
BLAST of mRNA_H-paniculata_contig20952.5458.1 vs. uniprot
Match: A0A6A6S6Z4_9PLEO (Uncharacterized protein n=1 Tax=Massarina eburnea CBS 473.64 TaxID=1395130 RepID=A0A6A6S6Z4_9PLEO)

HSP 1 Score: 129 bits (325), Expect = 4.440e-27
Identity = 61/175 (34.86%), Postives = 99/175 (56.57%), Query Frame = 2
Query:   17 TSVKGSTDMTTAVCAGICEGSKYFATQYSKECFCSKPGDEPTELGPASCTMACAGDPFDTCGGSLAMSLYEFESGAGGGGTGG----GYLGCYVDKGGDRIMAEKYV-DSEMTVELCDTVCSGLSYYGLQYGKECWCGGASTDYDKHSGLPNCNFACGGDSSQTCGGRDAMSVYQ 526
            T  + ++D T A C+  C G +YF  +Y+ EC+CS   +   +   + C+M+C+GD    CGG   ++++   +     G        Y+GCY D  G R++A+ Y+ DS MT+E C   CSG +Y+G +YG EC+CG    +  + +   +C FACGG+S + CG  D +++YQ
Sbjct: 1058 TKSRATSDNTYAACSSFCSGYQYFGVEYASECYCSNALEYTIQNPSSDCSMSCSGDSSTPCGGPARITVFTSNTTVNVIGNPSIANYAYIGCYTDSVGARVLADGYLADSAMTIEKCAAQCSGYTYFGTEYGSECYCGNGWKNPSQKAAEGDCGFACGGNSLEYCGAGDRLTMYQ 1232          
BLAST of mRNA_H-paniculata_contig20952.5458.1 vs. uniprot
Match: D8LDE3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE3_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 1.380e-26
Identity = 65/171 (38.01%), Postives = 91/171 (53.22%), Query Frame = 2
Query:   32 STDMTTAVCAGICEG--SKYFATQYSKECFCSKPGDEPTELGP---ASCTMACAGDPFDTCGGSLAMSLYEFESGAGGGGTGGGYLGCYVDKGGDRIM-AEKYVDSEMTVELCDTVCSGLSYYGLQYGKECWCGGASTDYDKHSGLPNCNFACGGDSSQTCGGRDAMSVYQ 526
            S DMT  +C   C G  + ++A QY +EC+C     +  +LG      C   C GD   TCGG  +  ++   +      T  G+LGCY D+  DR+  A+K    E  VE C   CSG   +GLQYG+ECWCG    DY KH    +C++ C G+   TCGG DAM++++
Sbjct:  768 SRDMTPTLCNEYCAGQYASFYAVQYGRECWCGDDSTDYAKLGALDMTECAYPCTGDGDLTCGGFDSFEIFSLPAE-----TSQGHLGCYADEQDDRLFRADKIRLDENGVEACRAACSGSPLFGLQYGRECWCGTEDEDYTKHGASTDCDYPCRGNEDYTCGGFDAMNIFE 933          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20952.5458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTD7_ECTSI4.110e-3547.31WSC domain containing protein n=1 Tax=Ectocarpus s... [more]
D8LEL0_ECTSI4.500e-3443.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LNS1_ECTSI5.450e-3440.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUE6_ECTSI8.310e-3345.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRS2_ECTSI2.200e-3243.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRS1_ECTSI5.870e-3246.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LC73_ECTSI1.600e-3038.69Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus sili... [more]
A0A8E2JB36_9PEZI6.020e-2836.53WSC-domain-containing protein n=1 Tax=Lepidopterel... [more]
A0A6A6S6Z4_9PLEO4.440e-2734.86Uncharacterized protein n=1 Tax=Massarina eburnea ... [more]
D8LDE3_ECTSI1.380e-2638.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20952contigH-paniculata_contig20952:2..3446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.9
Seed ortholog evalue4.1e-33
Seed eggNOG ortholog2880.D7FTD7
KEGG rclassRC00467
KEGG koko:K15920
KEGG ReactionR01433
KEGG Pathwayko00520,ko01100,map00520,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC3.2.1.37
COG Functional cat.U
CAZyGH3
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons5
Model size2297
Cds size492
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929551.0691204-UTR-H-paniculata_contig20952:1..411622929551.0691204-UTR-H-paniculata_contig20952:1..41Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20952 2..41 +
1691480910.272598-UTR-H-paniculata_contig20952:1..411691480910.272598-UTR-H-paniculata_contig20952:1..41Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20952 2..41 +
1622929551.155736-UTR-H-paniculata_contig20952:1681..34461622929551.155736-UTR-H-paniculata_contig20952:1681..3446Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20952 1682..3446 +
1691480910.33723-UTR-H-paniculata_contig20952:1681..34461691480910.33723-UTR-H-paniculata_contig20952:1681..3446Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20952 1682..3446 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929551.0831027-CDS-H-paniculata_contig20952:41..531622929551.0831027-CDS-H-paniculata_contig20952:41..53Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20952 42..53 +
1691480910.2839806-CDS-H-paniculata_contig20952:41..531691480910.2839806-CDS-H-paniculata_contig20952:41..53Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20952 42..53 +
1622929551.0979915-CDS-H-paniculata_contig20952:186..2431622929551.0979915-CDS-H-paniculata_contig20952:186..243Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20952 187..243 +
1691480910.292816-CDS-H-paniculata_contig20952:186..2431691480910.292816-CDS-H-paniculata_contig20952:186..243Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20952 187..243 +
1622929551.1102517-CDS-H-paniculata_contig20952:487..7241622929551.1102517-CDS-H-paniculata_contig20952:487..724Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20952 488..724 +
1691480910.302698-CDS-H-paniculata_contig20952:487..7241691480910.302698-CDS-H-paniculata_contig20952:487..724Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20952 488..724 +
1622929551.1245432-CDS-H-paniculata_contig20952:1210..12671622929551.1245432-CDS-H-paniculata_contig20952:1210..1267Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20952 1211..1267 +
1691480910.3158402-CDS-H-paniculata_contig20952:1210..12671691480910.3158402-CDS-H-paniculata_contig20952:1210..1267Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20952 1211..1267 +
1622929551.137934-CDS-H-paniculata_contig20952:1552..16811622929551.137934-CDS-H-paniculata_contig20952:1552..1681Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20952 1553..1681 +
1691480910.3256714-CDS-H-paniculata_contig20952:1552..16811691480910.3256714-CDS-H-paniculata_contig20952:1552..1681Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20952 1553..1681 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20952.5458.1prot_H-paniculata_contig20952.5458.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20952 42..1681 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20952.5458.1

>prot_H-paniculata_contig20952.5458.1 ID=prot_H-paniculata_contig20952.5458.1|Name=mRNA_H-paniculata_contig20952.5458.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=164bp
MTTAVCAGICEGSKYFATQYSKECFCSKPGDEPTELGPASCTMACAGDPF
DTCGGSLAMSLYEFESGAGGGGTGGGYLGCYVDKGGDRIMAEKYVDSEMT
VELCDTVCSGLSYYGLQYGKECWCGGASTDYDKHSGLPNCNFACGGDSSQ
TCGGRDAMSVYQY*
back to top

mRNA from alignment at H-paniculata_contig20952:2..3446+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20952.5458.1 ID=mRNA_H-paniculata_contig20952.5458.1|Name=mRNA_H-paniculata_contig20952.5458.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3445bp|location=Sequence derived from alignment at H-paniculata_contig20952:2..3446+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGGGTGCTGACGGGCACATCTGTCAAGGGCTCCACCGACATGACGACTG CGGTGAGATTCGGAGTTTGGCGTCGGTCGCCGCTACCATTAACAATAGTT GGTGTTCGTCAACTATCTTGTCATATTATCTCGCCTGAGCTTGGATGCTG ATCTTATCCTGTCTGCGCGCAACTATCGCTGGCAGGTCTGTGCTGGAATT TGTGAGGGATCCAAGTACTTTGCTACACAGTACTCGAAGGAGGTGAGAAG GGCAAAGTAAAGTAAGATGTTCTAGTGGTATCTAATGCACTGGTACACAT GTGGATTGTTCAATCGTGTCATCTCGCTTGTGGTGGGTGTCTTTTGTTTT TCCAGTCTTTTGTTTTTCCATTCTCCTCATCGCACACGATGCATTTGTGC GACATTCATGTCATGAACACAATACAGCAGAGGCTCATGTCTCTTCCATT TTGATGTCTTCTTTTGGAACTTGTCGCACGGTGTAGTGCTTTTGCAGTAA GCCCGGGGACGAACCCACGGAACTGGGTCCAGCTTCGTGCACAATGGCAT GCGCCGGCGACCCTTTTGACACCTGTGGTGGGTCGCTTGCAATGAGCTTG TACGAGTTTGAGTCCGGTGCGGGTGGAGGAGGGACGGGAGGAGGCTATTT GGGCTGCTACGTCGACAAGGGGGGCGATCGAATCATGGCCGAGAAATATG TAGACTCTGAAATGACTGTCGAGGTGCGTACAAGAAGCCCAGAATTGTGA TAAGTGGCCAGGGTAAACACGGAGGATTGCTTGGAATTTGTGCATATGGC AAACATTTCGCCTACAACTTGAGAAGCATGTCATTGGCGTAGAGGATATT TAAATTGATCTTGAGGAAACAGCCTATTTCCAATATAACCCAGGGTCCCC ATCTCAAAGCTGGGTCCCCATTTCACCAATATGCTGTTTATAGTTCTTTA TGATGCGTATTGATCTGGTACAAACACATAATCCGCTCGAGATCATCAGC TCTTATCGAGATGGACCACACAGTGGTTGAACCACTATTTGACAGCGAGA ACGTTTCGAAACGAACGTCTGATGTTCGTTCTGTGCCCAATGCACTTTCG GTGGCGCCTAGCGTAACGTTGTCCAGTGTTGGACGCAAGTCGGCGTCGAT TTTTCATCTTGTCACTTCATCACACATAACTTCGCGATCCTTGTTTTCTT GCTCTGCAGCTGTGCGACACCGTTTGTTCGGGGCTGAGTTACTACGGGTT GCAGTATGGAAAAGAGGTGAGGATATTATCATGTGATTTTGGCCGTGATC CATACATAGTTGGCAGTCCATTTGGTTAGATAGGGGGCAGTGCAATTAAG GTTTGTTGTTTTTCTAATTTTGCCCCACTTTTTATAACGTGAATGTCTGA CCCACTAGATAGCCACGCGTTTTGAGCTCATGTCAGAGTTGAAATCCCTG TCGCTTCATGATTAGGAAGCTGCCTGATCAAGGTTTGCTGCCTTGGCCCA CATCACTGTATTTTAAATTTATCGTCTTGAATACCTTTCTCCCCTTGGCA GTGTTGGTGTGGTGGGGCCTCGACCGACTATGACAAGCATTCGGGGTTGC CCAACTGCAACTTTGCCTGTGGAGGAGACTCCTCCCAGACATGCGGTGGA AGGGACGCCATGTCGGTGTACCAGTACTGAAAACAAGACAAGTTTAGTTA ATACATTGTCGTAGAAATATATGTTTCTGACCAAAAAGAGATGAAACTGT TGTTTGTTTGTTTGTTTTTGCGAGTCGTACTTTCTGGTCGGCCAGCAACT GGTGGAGGTGGGGGGTATCTTTCATTTTGTGTGTGTATATGTGTGTGTGC GTGTATGTCGCTTGAACCAACTTGGACCAACTTTGCGTACTCGCTCGACA CACCGGTAGGAGGTAGAGCTATGCTGTAAGGTGTTTTTGCAAAGCACGGT AGCCGTGGAGATGTGTGCGTTGGCGTTCTCCAGCTGCGCGGTTTAGGGAT TAGACAAGAAAGTTGGCGTATTGTGGTAGGACGCTGCTTTTGTGATGGGT ATAGTGTTCGGTAGGGAATTGCTCTCCACCCGGCTTCGAGTGAAAGAATC TATCCACGGTCCCAACAGACATTGCCAATTGGTGGGGTTAGGAGAAGAGC GGTAGCGGGAATTAGCACAGCGATATACGCAACGACAGTACGAGTAGGGT GTTCGAGATGTGTTGTATTTGTACTTGCAGGAGCCAGACCTGTCATGTTG GCACCGTTCTCGGTTGTTTTGTTTGTCCATTGTCCTTGGCAAATTGCTGG CGATACGTTACCATCGAGGTGCTCGGGTAAGCGATTGTGCATTTTTTGGC GTGTTCGTCACAAAAGCGTCCATGTTTTATTTTATCATGACTGGGTGTAG GGTGGTGCTCTGCGTGGTTTCCATCAGATTGGCGTGGAAATATCTCCTTT GGTGGTCCTCACGCAGGGACGCATCGCGTGTGGCCGCACTAATTGTCTCC TCTGTCGCCCTTTTGTCTGTAAGATATCCAGACCTTGTTCGTTCCTTTGG TATCACGAATCTTGGCGGCAGAAGTAGGGAGAGGTTTTATGTTGTCATCT TATTTTTCGCGGGAATTGTCATTCAAAATTATCCTCCTTGTATGTGGACT TCCGGACAAAGGGAACAGCTTGACGTATATGTCAAACTGTTGGATTTATG TTATGTTGTGGAGAAAGTGAATCTCATGTTAGATGTCATTACATGTGTAC TTAAATGTGTCGTGTTGGGGGAGAGACGGATATTATAGCATCCATTCGAC TACAACACATATGTATCATGTATGTAGAATGTGGGTGCGTCGTTTCAATC TGTTGATTTAGTAAGGTCCTGGCGCTCTTTCTATGCGCGATGGGCACGAT CGGTCCATGCTAACGGCTCATCATATTGATGAGAAAAACGGGGCGTGTAC GTTGTCCGCAGTTTTGGTACTTTGGCATTAATATATGTGCGATTTGTTGA GTAGCTTCTTTTCCCTTCGGCCTTCAAGGGGGGCAGCAGAAATTGCCACC TCGACATTAGGCTTACGAAATTTCTTTATACCGATAGTTAGTCCGATGTT GGTACCAGCAAGTATAATGAATGAAAATACTGGTAAGTGTTCCAGCAAGT GACAATTATACATGTGTGTTGTTCTCCCATCTGGGATGAAGGATCGGGTG AGGGATCGACTGTTGTAATGCTATGCTAGGATATTTGTGGGCGTGTTAAC CAGATTTGACAGTTGCATATAATTGTGTTGTTATTCCGTTCAGGTCTGTC TGTATTTTGGTGCAGCCGGATTTTATTTAGAACATCTGACCGTACACCCG CAGGTAACTGCAAAAGCAGGCGCGGGTAGCTATTAAGCTAACCGAGCAGG TACGCTATGCTGAGGATACAAACAGTTAATGATGGTTAAAAAGTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig20952:2..3446+

>mRNA_H-paniculata_contig20952.5458.1 ID=mRNA_H-paniculata_contig20952.5458.1|Name=mRNA_H-paniculata_contig20952.5458.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=984bp|location=Sequence derived from alignment at H-paniculata_contig20952:2..3446+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGACTGCGATGACGACTGCGGTCTGTGCTGGAATTTGTGAGGGATC
CAAGTACTTTGCTACACAGTACTCGAAGGAGGTCTGTGCTGGAATTTGTG
AGGGATCCAAGTACTTTGCTACACAGTACTCGAAGGAGTGCTTTTGCAGT
AAGCCCGGGGACGAACCCACGGAACTGGGTCCAGCTTCGTGCACAATGGC
ATGCGCCGGCGACCCTTTTGACACCTGTGGTGGGTCGCTTGCAATGAGCT
TGTACGAGTTTGAGTCCGGTGCGGGTGGAGGAGGGACGGGAGGAGGCTAT
TTGGGCTGCTACGTCGACAAGGGGGGCGATCGAATCATGGCCGAGAAATA
TGTAGACTCTGAAATGACTGTCGAGTGCTTTTGCAGTAAGCCCGGGGACG
AACCCACGGAACTGGGTCCAGCTTCGTGCACAATGGCATGCGCCGGCGAC
CCTTTTGACACCTGTGGTGGGTCGCTTGCAATGAGCTTGTACGAGTTTGA
GTCCGGTGCGGGTGGAGGAGGGACGGGAGGAGGCTATTTGGGCTGCTACG
TCGACAAGGGGGGCGATCGAATCATGGCCGAGAAATATGTAGACTCTGAA
ATGACTGTCGAGCTGTGCGACACCGTTTGTTCGGGGCTGAGTTACTACGG
GTTGCAGTATGGAAAAGAGCTGTGCGACACCGTTTGTTCGGGGCTGAGTT
ACTACGGGTTGCAGTATGGAAAAGAGTGTTGGTGTGGTGGGGCCTCGACC
GACTATGACAAGCATTCGGGGTTGCCCAACTGCAACTTTGCCTGTGGAGG
AGACTCCTCCCAGACATGCGGTGGAAGGGACGCCATGTCGGTGTACCAGT
ACTGATGTTGGTGTGGTGGGGCCTCGACCGACTATGACAAGCATTCGGGG
TTGCCCAACTGCAACTTTGCCTGTGGAGGAGACTCCTCCCAGACATGCGG
TGGAAGGGACGCCATGTCGGTGTACCAGTACTGA
back to top