mRNA_H-paniculata_contig2090.5445.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2090.5445.1
Unique NamemRNA_H-paniculata_contig2090.5445.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2090.5445.1 vs. uniprot
Match: D8LH84_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH84_ECTSI)

HSP 1 Score: 291 bits (744), Expect = 3.720e-93
Identity = 146/205 (71.22%), Postives = 178/205 (86.83%), Query Frame = 1 
Query:  184 SSKSSGAHAGPIILGSKSFTRKAILEKMAFTPIIRTADIDEAAIGDRTSDPRELVLELGLAKAKALLPVLKAEAERGTLGAVYLLTADQVVVHEGRILEKPADEEEVRRNIAGYAISPCRTVGSAVLTNVLTGEQVSGVDTAEVSFAEIPETVVAQLCREGTVFRCAGGLMVEHEMVQPFILKIDGTIDSVMGLSKSLVLKLLDQ 798
            SS    ++ G IILGSKSFTRK I+E+M F PI+R+ADI+EAAIGDRT+DP +LVL+LGLAKA+ALLP LKAEA+RG L   +LLT DQVVVH+GRILEKPADE+EVRRNIA YA SPCRTVGSAVLT++ TG+Q SGVDTAE+ F E+PE+VV +LC EGTV +CAGGLMVEH +V+PFI +IDG++DSVMGLSK+LVL+LL++
Sbjct:    3 SSPGHSSNQGQIILGSKSFTRKMIIEEMGFVPIVRSADINEAAIGDRTADPADLVLQLGLAKAEALLPALKAEADRGELSTSWLLTGDQVVVHDGRILEKPADEDEVRRNIASYARSPCRTVGSAVLTDISTGQQFSGVDTAEIFFKEVPESVVTKLCGEGTVLQCAGGLMVEHPLVEPFIARIDGSMDSVMGLSKALVLELLEK 207
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BLAST of mRNA_H-paniculata_contig2090.5445.1 vs. uniprot
Match: A0A836CPK2_9STRA (Inosine triphosphate pyrophosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPK2_9STRA)

HSP 1 Score: 236 bits (601), Expect = 8.990e-72
Identity = 128/196 (65.31%), Postives = 153/196 (78.06%), Query Frame = 1 
Query:  217 IILGSKSFTRKAILEKMAFTPIIRTADIDEAAIGDRTSDPRELVLELGLAKAKALLPVLKAEAERGTLGAVYLLTADQVVVHEGRILEKPADEEEVRRNIAGYAISPCRTVGSAVLTNV-LTGEQVSGVDTAEVSFAEIPETVVAQLCREGTVFRCAGGLMVEHEMVQPFILKIDGTIDSVMGLSKSLVLKLLDQL 801
            IILGSKS TRK I+E+M +  IIRTADIDE AIGDR SDP +LVLE+G AKA ALLP L   A R   GA  LLT DQVVVH+GR+LEKP D  EVRRNIA YA+SPCRTVGSAV+T +   G +VSGVDTA + F  IP++VV +LC+E  +  CAGGLM+EH +V+P+I +I+GTIDSVMGLSK LV +LLD+L
Sbjct:    9 IILGSKSATRKLIIEEMGWEAIIRTADIDEKAIGDRASDPAQLVLEIGTAKADALLPSLADAAARH--GARLLLTGDQVVVHDGRVLEKPHDYAEVRRNIAAYALSPCRTVGSAVITELGAGGRRVSGVDTACIYFRPIPDSVVDELCKEEEILWCAGGLMIEHPLVEPYIERIEGTIDSVMGLSKPLVQRLLDEL 202
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BLAST of mRNA_H-paniculata_contig2090.5445.1 vs. uniprot
Match: A0A6V1TL15_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TL15_HETAK)

HSP 1 Score: 199 bits (505), Expect = 6.390e-57
Identity = 114/199 (57.29%), Postives = 140/199 (70.35%), Query Frame = 1 
Query:  217 IILGSKSFTRKAILEKMAFTPIIRTADIDEAAIGDRTSD----PRELVLELGLAKAKALLPVLKAEAERGTLGAVYLLTADQVVVHEGRILEKPADEEEVRRNIAGYAISPCRTVGSAVLTNVLTGEQVSGVDTAEVSFAEIPETVVAQLCREGTVFRCAGGLMVEHEMVQPFILKIDGTIDSVMGLSKSLVLKLLDQL 801
            IILGSKSFTR+ I+++M   PIIR ADIDE AIGDR++D    P  LVL LG AKA A   +L++  + G  G   LLT DQVVVHEGRILEKP   EE R+ I GYA +P RTVGSAVLT++ TG ++ GVDTA + FA  P  VV +L  +     CAGGLMVEHE+VQP++  IDGT+DSVMGLSK L   L+ ++
Sbjct:   45 IILGSKSFTRQMIVKEMGMEPIIRVADIDEKAIGDRSADTGWDPERLVLALGNAKADA---ILESGLQPGDHG--LLLTGDQVVVHEGRILEKPTSLEEARQFIEGYARAPPRTVGSAVLTDLATGRRLQGVDTATIRFAPFPPEVVDRLLADEMTLHCAGGLMVEHELVQPYLEGIDGTVDSVMGLSKRLTETLIRRM 238
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BLAST of mRNA_H-paniculata_contig2090.5445.1 vs. uniprot
Match: A0A2R6XTF4_MARPO (Uncharacterized protein n=3 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XTF4_MARPO)

HSP 1 Score: 183 bits (465), Expect = 1.330e-51
Identity = 108/207 (52.17%), Postives = 136/207 (65.70%), Query Frame = 1 
Query:  199 GAHAG-PIILGSKSFTRKAILEKMAFTPIIRTADIDEAAIGDRTSDPRELVLELGLAKAKALLPVLKA-EAERGTLGAVYLLTADQVVVHEGRILEKPADEEEVRRNIAGYAISPCRTVGSAVLTNVLTGEQVSGVDTAEVSFAEIPETVVAQLCREGTVFRCAGGLMVEHEMVQPFILKIDGTIDSVMGLSKSLVLKLLDQLSPRT 813
            G HA   IILGS S TR+AI+++M     I TADIDE++I  R   P +LV+ L  AKA+A+L  L   E++  +     L+TADQVVVHEG ILEKP   EE RR I GY+ SP RTVG+ ++TN+ TG    GVDTAE+ F  IPE V+  L  EG+VF  AGGL+VEH +V P +  + GTIDSVMGL K L L L+D+   RT
Sbjct:    2 GLHADVKIILGSSSQTRRAIMKEMGLEFEILTADIDESSI--RREKPEDLVMALAEAKAQAILARLATKESDADSAQQTLLITADQVVVHEGNILEKPRTSEEARRFIEGYSRSPARTVGAVLVTNLSTGVSKGGVDTAEIYFHSIPEHVITTLIEEGSVFWAAGGLLVEHPLVSPLVNAMVGTIDSVMGLPKELTLSLIDEAVERT 206
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BLAST of mRNA_H-paniculata_contig2090.5445.1 vs. uniprot
Match: A0A0G4EZT5_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EZT5_VITBC)

HSP 1 Score: 185 bits (469), Expect = 1.860e-51
Identity = 104/196 (53.06%), Postives = 131/196 (66.84%), Query Frame = 1 
Query:  214 PIILGSKSFTRKAILEKMAFTPIIRTADIDEAAIGDRTSDPRELVLELGLAKAKALLPVLKAEAERGTLGAVYLLTADQVVVHEGRILEKPADEEEVRRNIAGYAISPCRTVGSAVLTNVLTGEQVSGVDTAEVSFAEIPETVVAQLCREGTVFRCAGGLMVEHEMVQPFILKIDGTIDSVMGLSKSLVLKLLDQL 801
            P+I+GSKS TR+ IL +M F   + +ADIDE  +GDR S P ELVLE+  AKA+ALL  L        +    LLT DQVVV +GRI EKP D  E R  I GY  SPC+TVGS VLT++ T  QVSGVDTA +    IP+ ++ +L  EG +  CAGGLM+EH +V+P+I +IDG  DSV+GLSK+LV  LL  L
Sbjct:   61 PLIVGSKSKTRRQILTEMGFDLHLESADIDEKQVGDRASCPSELVLEVAKAKAQALLDKLANTESPYRI----LLTGDQVVVWKGRIREKPHDGAEAREFIEGYGRSPCQTVGSCVLTDLHTRTQVSGVDTATIHIKPIPDDIIQKLIDEGDILHCAGGLMIEHPLVEPYIERIDGAFDSVLGLSKALVDSLLIDL 252
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BLAST of mRNA_H-paniculata_contig2090.5445.1 vs. uniprot
Match: A0A2P6U4K7_CHLSO (Septum formation MAF n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U4K7_CHLSO)

HSP 1 Score: 175 bits (444), Expect = 5.010e-48
Identity = 105/197 (53.30%), Postives = 133/197 (67.51%), Query Frame = 1 
Query:  217 IILGSKSFTRKAILEKMA----FTPIIRTADIDEAAIGDRTSDPRELVLELGLAKAKALLPVLKAEA-ERGTLGAVYLLTADQVVVHEGRILEKPADEEEVRRNIAGYAISPCRTVGSAVLTNVLTGEQVSGVDTAEVSFAEIPETVVAQLCREGTVFRCAGGLMVEHEMVQPFILKIDGTIDSVMGLSKSLVLKLL 792
            IILG+ S +R+AI++++A    F   I  ADIDE AI  R  D + LVL L  AKA A+   L+A A E G      L+T DQVV+HEG+ILEKP DE E RR IAGY  +P  TVGS VLT++ +G    GVD A + FA IP   V +L  EG VF CAGGLMVEHE+VQP ++++DG++DSVMGL K L+L+LL
Sbjct:   41 IILGTGSSSRRAIMDELAARYGFKYEIAKADIDEKAI--RHEDAQHLVLRLAHAKADAIRAKLQAAADEAGQPLDGLLVTCDQVVLHEGQILEKPEDEAEARRYIAGYGRAPASTVGSVVLTDLASGRNWEGVDVATIHFAPIPGDSVDRLIAEGEVFWCAGGLMVEHELVQPHVIRMDGSLDSVMGLDKQLLLRLL 235
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BLAST of mRNA_H-paniculata_contig2090.5445.1 vs. uniprot
Match: A0A250WYZ0_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WYZ0_9CHLO)

HSP 1 Score: 172 bits (436), Expect = 3.970e-47
Identity = 104/206 (50.49%), Postives = 127/206 (61.65%), Query Frame = 1 
Query:  217 IILGSKSFTRKAILEKMA----FTPIIRTADIDEAAIGDRTSDPRELVLELGLAKAKALLPVLKAEAERGTLGAV----------YLLTADQVVVHEGRILEKPADEEEVRRNIAGYAISPCRTVGSAVLTNVLTGEQVSGVDTAEVSFAEIPETVVAQLCREGTVFRCAGGLMVEHEMVQPFILKIDGTIDSVMGLSKSLVLKLL 792
            IILGS S +RK I++ +A    F   ++TADIDE AI  R  DP +LVL LG AK  A+L   K  AE  T G++          YL+T DQVVVH GRILEKP +E E R  I GY  SP  TVGS V T++ TG     VD + +  A IPE V+ +L  EG    CAGGLM+EH +V P+I KI+GT D V GLSK+LV KLL
Sbjct:   11 IILGSASSSRKKIMDDLASQYGFNYTVKTADIDEKAI--RFQDPHQLVLALGHAKRDAILS--KLAAETSTSGSISSSEDHNTNAYLITCDQVVVHGGRILEKPENENECREFIRGYGESPASTVGSVVCTSLSTGRSYEEVDVSHIHIATIPEEVITKLVEEGACMWCAGGLMIEHPLVSPYIQKIEGTEDGVRGLSKALVTKLL 212
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BLAST of mRNA_H-paniculata_contig2090.5445.1 vs. uniprot
Match: A0A0G4GMM6_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GMM6_9ALVE)

HSP 1 Score: 173 bits (439), Expect = 4.530e-47
Identity = 102/199 (51.26%), Postives = 128/199 (64.32%), Query Frame = 1 
Query:  214 PIILGSKSFTRKAILEKMAFTPIIRTADIDEAAIGDRTSD-PRELVLELGLAKAKALLPVLKAEAE-RGTLGAVYLLTADQVVVHEGRILEKPADEEEVRRNIAGYAIS-PCRTVGSAVLTNVLTGEQVSGVDTAEVSFAEIPETVVAQLCREGTVFRCAGGLMVEHEMVQPFILKIDGTIDSVMGLSKSLVLKLLDQL 801
            PIILGS S TRK I+ +M        AD+DE AIGDR +  P E+V  LG AKA  ++  LK E E  GTL    L+T DQVVV EG+ILEKP   EE R  +  Y+   PC TVGS V+T V +G QVSG+   +  F  IP  V+ ++  EG VF  AGGLM+EH ++QP+I KIDGTID+VMG+SK LV  L+ Q+
Sbjct:   22 PIILGSSSATRKMIIAEMGLRYRTEIADLDERAIGDRENQSPEEIVTLLGKAKADVIMSQLKPEEEAEGTL----LITGDQVVVCEGKILEKPGSAEEARSFLQKYSAGIPCGTVGSIVVTEVASGRQVSGIQRTQTVFGGIPSDVIERIVEEGEVFHTAGGLMIEHPLLQPYIRKIDGTIDAVMGVSKMLVRDLMLQI 216
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BLAST of mRNA_H-paniculata_contig2090.5445.1 vs. uniprot
Match: A0A7S2JN27_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2JN27_9EUKA)

HSP 1 Score: 170 bits (430), Expect = 3.170e-46
Identity = 104/200 (52.00%), Postives = 127/200 (63.50%), Query Frame = 1 
Query:  202 AHAGPIILGSKSFTRKAILEKMAFTPIIRTADIDEAAIGDRTSDPRELVLELGLAKAKALLPVLKAEAERGT---LGAVYLLTADQVVVHEGRILEKPADEEEVRRNIAGYAISPCRTVGSAVLTNVLTGEQVSGVDTAEVSFAEIPETVVAQLCREGTVFRCAGGLMVEHEMVQPFILKIDGTIDSVMGLSKSLVLKLL 792
            A A  +ILGS S TR+AIL +M     +R  DIDE AI  R  DP +LV+ LG AKA AL+     E +RG        ++LT DQVVVH GRILEKP DE E R  IAGY  +   TVGS VLTN  +GEQ + VD A + F  IP++ V  L  EG VF CAGGLMVEH +VQP + ++ G ID+VMGL K+ V +LL
Sbjct:   21 APAQRLILGSGSATRQAILSEMGLAFEVRKPDIDEKAI--RFDDPAKLVMALGKAKAAALI-----EGDRGADLRASGAWVLTGDQVVVHRGRILEKPLDEAECRSFIAGYGEASPMTVGSCVLTNAASGEQWAAVDEATIVFDPIPKSTVKALIAEGEVFNCAGGLMVEHPLVQPHVREMVGGIDTVMGLCKATVERLL 213
[Close]
BLAST of mRNA_H-paniculata_contig2090.5445.1 vs. uniprot
Match: A0A7S2ZRT4_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZRT4_9RHOD)

HSP 1 Score: 169 bits (429), Expect = 5.780e-46
Identity = 101/192 (52.60%), Postives = 125/192 (65.10%), Query Frame = 1 
Query:  217 IILGSKSFTRKAILEKMAFTPIIRTADIDEAAIGDRTSDPRELVLELGLAKAKALLPVLKAEAERGTLGAVYLLTADQVVVHEGRILEKPADEEEVRRNIAGYAISPCRTVGSAVLTNVLTGEQVSGVDTAEVSFAEIPETVVAQLCREGTVFRCAGGLMVEHEMVQPFILKIDGTIDSVMGLSKSLVLKLL 792
            +ILGS S +RK IL +M     +  ADIDE AI  R  DP  LV  LG  KA A+L  + +       G V+LLT DQVVVH G+ILEKP DE+E R  I GY  +P RTVGS V+TNV TGE+   +DTAEV F EIP  V+ +L  EG VF CAGGL VE  +V  ++  I G++DSVMGLSK++V +LL
Sbjct:   33 LILGSGSASRKEILGEMGLEFEVLKADIDERAI--RHEDPATLVSILGNKKADAILERMNSHGVPEYEGEVFLLTGDQVVVHNGKILEKPLDEKEARTFIEGYNRAPARTVGSIVITNVKTGERFESLDTAEVYFHEIPGEVIDKLIEEGEVFYCAGGLKVEDPLVSRYVDHIAGSMDSVMGLSKAIVEQLL 222
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2090.5445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LH84_ECTSI3.720e-9371.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CPK2_9STRA8.990e-7265.31Inosine triphosphate pyrophosphatase-like protein ... [more]
A0A6V1TL15_HETAK6.390e-5757.29Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A2R6XTF4_MARPO1.330e-5152.17Uncharacterized protein n=3 Tax=Marchantia polymor... [more]
A0A0G4EZT5_VITBC1.860e-5153.06Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A2P6U4K7_CHLSO5.010e-4853.30Septum formation MAF n=1 Tax=Chlorella sorokiniana... [more]
A0A250WYZ0_9CHLO3.970e-4750.49Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A0G4GMM6_9ALVE4.530e-4751.26Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A7S2JN27_9EUKA3.170e-4652.00Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S2ZRT4_9RHOD5.780e-4652.60Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2090contigH-paniculata_contig2090:8654..12462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score289.7
Seed ortholog evalue1.4e-75
Seed eggNOG ortholog2880.D8LH84
Preferred nameMAF
KEGG koko:K06287
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006720,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009507,GO:0009536,GO:0009987,GO:0016119,GO:0016120,GO:0016853,GO:0016859,GO:0042214,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046246,GO:0071704,GO:0090471,GO:1901576
EggNOG free text desc.nucleoside-triphosphate diphosphatase activity
EggNOG OGsCOG0424@1,KOG1509@2759
Ec32 ortholog descriptionInosine triphosphate pyrophosphatase-like
Ec32 orthologEc-24_000950.1
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons4
Model size1497
Cds size807
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2090.5445.1prot_H-paniculata_contig2090.5445.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2090 8672..11790 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929549.009461-UTR-H-paniculata_contig2090:8653..86711622929549.009461-UTR-H-paniculata_contig2090:8653..8671Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2090 8654..8671 +
1691480909.2416303-UTR-H-paniculata_contig2090:8653..86711691480909.2416303-UTR-H-paniculata_contig2090:8653..8671Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2090 8654..8671 +
1622929549.1942716-UTR-H-paniculata_contig2090:11790..124621622929549.1942716-UTR-H-paniculata_contig2090:11790..12462Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2090 11791..12462 +
1691480909.3031435-UTR-H-paniculata_contig2090:11790..124621691480909.3031435-UTR-H-paniculata_contig2090:11790..12462Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2090 11791..12462 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929549.0228722-CDS-H-paniculata_contig2090:8671..89401622929549.0228722-CDS-H-paniculata_contig2090:8671..8940Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2090 8672..8940 +
1691480909.2660115-CDS-H-paniculata_contig2090:8671..89401691480909.2660115-CDS-H-paniculata_contig2090:8671..8940Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2090 8672..8940 +
1622929549.035203-CDS-H-paniculata_contig2090:9415..96561622929549.035203-CDS-H-paniculata_contig2090:9415..9656Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2090 9416..9656 +
1691480909.27853-CDS-H-paniculata_contig2090:9415..96561691480909.27853-CDS-H-paniculata_contig2090:9415..9656Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2090 9416..9656 +
1622929549.0490756-CDS-H-paniculata_contig2090:11212..113111622929549.0490756-CDS-H-paniculata_contig2090:11212..11311Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2090 11213..11311 +
1691480909.2868505-CDS-H-paniculata_contig2090:11212..113111691480909.2868505-CDS-H-paniculata_contig2090:11212..11311Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2090 11213..11311 +
1622929549.1165426-CDS-H-paniculata_contig2090:11592..117901622929549.1165426-CDS-H-paniculata_contig2090:11592..11790Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2090 11593..11790 +
1691480909.2946994-CDS-H-paniculata_contig2090:11592..117901691480909.2946994-CDS-H-paniculata_contig2090:11592..11790Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2090 11593..11790 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2090.5445.1

>prot_H-paniculata_contig2090.5445.1 ID=prot_H-paniculata_contig2090.5445.1|Name=mRNA_H-paniculata_contig2090.5445.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=269bp
MAIRRSKCAVITLALALGSSGIQRTNAFVYEQIRTSTHAQFFRECHSSSH
CCSSMSSKSSGAHAGPIILGSKSFTRKAILEKMAFTPIIRTADIDEAAIG
DRTSDPRELVLELGLAKAKALLPVLKAEAERGTLGAVYLLTADQVVVHEG
RILEKPADEEEVRRNIAGYAISPCRTVGSAVLTNVLTGEQVSGVDTAEVS
FAEIPETVVAQLCREGTVFRCAGGLMVEHEMVQPFILKIDGTIDSVMGLS
KSLVLKLLDQLSPRTAPT*
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mRNA from alignment at H-paniculata_contig2090:8654..12462+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2090.5445.1 ID=mRNA_H-paniculata_contig2090.5445.1|Name=mRNA_H-paniculata_contig2090.5445.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3809bp|location=Sequence derived from alignment at H-paniculata_contig2090:8654..12462+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATACTCTCTGCTGACTTCATGGCCATCCGACGCAGTAAGTGCGCTGTAAT
TACGCTTGCCCTTGCTCTAGGCTCCTCGGGAATCCAGAGAACAAATGCGT
TCGTATATGAACAAATCAGAACTTCCACCCATGCGCAGTTCTTTCGTGAA
TGCCATTCGTCGTCACATTGTTGCAGCAGCATGTCATCGAAGTCTTCCGG
CGCTCACGCAGGCCCAATTATTCTAGGTTCCAAGTCGTTCACCCGGAAGG
CAATTCTGGAGAAGATGGCATTCACGCCGATCATCAGGTACGAACAGTTG
ACCGCAAAAGTCAAGGACAGATTAACGACATGAGAATGTAATTGAGAACG
CCTATTTTTCGTTCAGCCTCACGAATAGCACGATTTGTGATGATGGTAAT
GCTGACCTTCGCTTTAAAAAAGATATGTTCCTTGTACGCGCGTGTGGCAC
ACCCAAGCTAATGTCCACACGAGAGGGAATAATGAATACCACGGACACTT
TGGTTCAGAATATCCCCATTCCACCGACGACGGCGCCCCTGTCCTTCTGT
GTGTGTGCTCTCTCTCTTATTTATCTATTCCCTATTCTTGTCTATGTGCT
TTTCATGGTTTATGATTGTCAGCAGCTTGTACTCCCGATGTGACTGATTT
TTCGGATGAATTACAGTAAGATTACGGACATCATCACGATTTCGATTATT
ACCGTAATGTTATCTGTACATGTCACCGTCATAAGTCGTAACCCATTGTC
CCCATAACGCAGAACAGCAGACATTGACGAGGCGGCGATTGGCGACCGAA
CGTCAGATCCAAGAGAGCTCGTGCTGGAGCTTGGATTGGCGAAAGCCAAG
GCCCTCTTGCCGGTTCTCAAAGCTGAAGCAGAACGGGGTACCTTAGGTGC
CGTATATCTGTTGACCGCCGATCAAGTTGTAGTTCACGAGGGACGCATAC
TAGAGAAACCCGCTGATGAAGAAGAGGTCCGACGGAACATCGCCGGATAT
GCGGTGAGATACTGCCCACATTTCAAGTATGTTATGTTTCATTGGTCGTT
TACGTATAACATCAGTAAAAAAGATAGTGGAGAGCTTATGTAAAAATTGC
TTCAGGACTCAGGAGTTGACTTAGGGTCGGGGAAAAACCCTGACTAATAG
CAATTCCAAATTTCCAAGAGTTTTCAGGATTTGCGCGCAACGGAGCCCAC
GATGACGGTGGCTGGCAAATTGGGTGAATAGATAGCAACCGAGCCGCCGC
TGCACCGTAGAGGAATGTGTCATATATCAATGTGAACGTTCCTCAACGGC
TGGGGCATGGATCTGTAGTGTATTCTAGCATCACCCAGTATTGCTGCACC
ATGGAGGCATGAGACTGTACTTTGGCAGTGGTTAGCCTGCTTTAATTCGT
CCCTACCATACATGCCACCGTGCACATGATGGCGCTATAGCACGGCTTAT
ATCCCAAATAGTGGAAAACTCTTGTCAATACTTTTTTTGCTCCACAGACC
GTTCTAAACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTTTGTTTTC
CGTATCCATATGCAATAGTAGTATGCAAGTGGCCTTTTTTACTTTACCAA
CACACAGACACGAGCTGGAGAGTCGACTGAAGTTGGACCAATAGCACCCA
CTGACATAGTGCAGTTTGCAATTCTCACCGGCACGACAGTCATGGAGCTA
CAGGCAGTGTATTCGTATTTCTTTTTTAATCTAATTCAACGGAAAAATTG
GTTGCCACAGTACAGTCAGTCGCTACGGCAAAAATTAGGCCGTCCCACGC
TACTTTATGCCCGTCACTCGAGTGTTGAAAACTCTTTTCTAGACCCAACT
GCGGGCATCTGGCCATCATTCATGTCCCCGAGTGCTTTCGAGATATGGAT
TTGTGGCTCGTAGCGACACAACAGCTACGTCGTGGTGGCCGGTGTGTGTT
TATTTGGTCCCGTATTTGTCTGTGTGAAGCTGCGCATGTGTGTCGAGTTA
ACGTGCTGCAGTTCGCAAACCCTGAACCTGAGCCGCAACAAACAGACCCA
GGGAAATATTTCATTTCTTGGCTCGCCACCCTGAGCTTTTCTTTCAAGAT
CCCCACTCAGGTTTAAATTAGGGTAAAATATCATTTATCACACCCAAAAC
CTGACTCTGAGTCAATCCTGAGCCCATTCTTTTTTGCCGAAACTGTAATA
AGATCACGTCCTGTTCACCGCTGACAATTGTACTGCAGTCCTGACTGACA
ACCAGATTGAGCCTGATTTGATTTACTCAAAATGTCGTGGAACGACTCCA
GTGCAGTACCTGTTGATGGCCGGTTACAGGTTTTGGGAACCGAGTACTAC
AGCGAGCTTCGCGCGCGTCTGAAGAATATAATTGGCGGAGTATTACGTGG
TCAATGTACTGTGATCAAGTTCAATACTTCGCCTCATGTGTAGCTGTTCC
ACGTTGTGTGGAGACAGCTGGTGATTTCTTCTGAGTCAGTCTTCCGTGCG
CATTGGTTGCGAGCATTGGTGACATGAACAATTCCTATTTTCGCTTCTTG
TTGTCGCAGATATCACCTTGCCGAACCGTCGGATCTGCAGTCCTGACCAA
CGTGTTGACAGGGGAGCAGGTTTCAGGGGTCGATACAGCTGAGGTCTCGT
TCGCGGAGGTAAGGTTTTGTTCTGTGCCTAGGCCCTGTTTAATTCGTACT
TTACACAACAGATAAAACATGAAGTGAAAGCAGTACGGGACAACATTTTG
CACACTATGTCGTATTTGGATTGATACATGTTTTGCTATTCACCACAAGA
GAGAAGCTACTTTTCTCGAAAAACAGCCTTCGGCAATCGATCCACCTTCC
GTTCTGCTGTTATGAAGGTTGGCCCCTCAGCCATGACCAGTTGCTGTATT
TTCCATTTCGTTTTTCTGTCTACCTTCTTGTTCTGCTAGATCCCTGAGAC
TGTGGTGGCGCAGCTGTGTAGAGAAGGAACCGTATTCCGGTGTGCTGGTG
GCCTGATGGTGGAGCATGAGATGGTGCAACCGTTCATCTTGAAGATTGAT
GGCACAATAGACTCAGTCATGGGCTTGTCGAAGTCATTGGTGCTCAAGTT
ACTTGATCAGCTGTCTCCGCGCACAGCTCCAACATAAAAGCGATAAAGCA
CACGATTGGTAGCACTCCACAGTGATGGAAATATTCTTGACGAACTTGGC
CGTGCAAGCTGCCGCTCCAGTACTTCTTTGTGGAAGTATTTCCCCAGGCA
AGAAAGAGTACAAATACGCTCATGTGCATGACTGCCCTTCGAAGCAGTAT
CCACCACGACTGATACACGTACGGTGACTTCGGCAAGTAGTTGCGATGGG
GAATAATGACGGGTCCTAATGGGGTGGAAGAGGCGCAGTAGCATCGGGTT
TTGTTTGAGAGACTAGTGAACTACAAAGTACCGACGTATTTACAATCTAG
GGGAACCTGAGTCGGCCAGATCGAACCAGACACACAATCTGTACTGTATG
GTGGAAGAGTTGACCAATATTTTCGGTCCAGGGTGTGACATGACATTTGG
ATCAGCAAAAAGAAAACTACATACGTAAAGGGCGGCGACTAGATAATCCA
TACCTTACTCCTGGTATGTCTAATACTTCAATTCATTTGGCATGTAGTGC
AGTACGCATGTATGTTCATTGGCTCGTACCGGGGCTGTTTCGTTTGGGAA
GAGCGTGTTTTGTGGCTCCTATTTTATGACCAACGGTATTGACTAGGCGA
TAATCAAACGTGACGAAGAAAAACAACCAAAAACACCACCTTCTCCCCGC
CTAGATTCA
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Coding sequence (CDS) from alignment at H-paniculata_contig2090:8654..12462+

>mRNA_H-paniculata_contig2090.5445.1 ID=mRNA_H-paniculata_contig2090.5445.1|Name=mRNA_H-paniculata_contig2090.5445.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1614bp|location=Sequence derived from alignment at H-paniculata_contig2090:8654..12462+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCATCCGACGCAGTAAGTGCGCTGTAATTACGCTTGCCCTTGCTCT
AGGCTCCTCGGGAATCCAGAGAACAAATGCGTTCGTATATGAACAAATCA
GAACTTCCACCCATGCGCAGTTCTTTCGTGAATGCCATTCGTCGTCACAT
TGTTGCAGCAGCATGTCATCGAAGTCTTCCGGCGCTCACGCAGGCCCAAT
TATTCTAGGTTCCAAGTCGTTCACCCGGAAGGCAATTCTGGAGAAGATGG
CATTCACGCCGATCATCAGATGGCCATCCGACGCAGTAAGTGCGCTGTAA
TTACGCTTGCCCTTGCTCTAGGCTCCTCGGGAATCCAGAGAACAAATGCG
TTCGTATATGAACAAATCAGAACTTCCACCCATGCGCAGTTCTTTCGTGA
ATGCCATTCGTCGTCACATTGTTGCAGCAGCATGTCATCGAAGTCTTCCG
GCGCTCACGCAGGCCCAATTATTCTAGGTTCCAAGTCGTTCACCCGGAAG
GCAATTCTGGAGAAGATGGCATTCACGCCGATCATCAGAACAGCAGACAT
TGACGAGGCGGCGATTGGCGACCGAACGTCAGATCCAAGAGAGCTCGTGC
TGGAGCTTGGATTGGCGAAAGCCAAGGCCCTCTTGCCGGTTCTCAAAGCT
GAAGCAGAACGGGGTACCTTAGGTGCCGTATATCTGTTGACCGCCGATCA
AGTTGTAGTTCACGAGGGACGCATACTAGAGAAACCCGCTGATGAAGAAG
AGGTCCGACGGAACATCGCCGGATATGCGAACAGCAGACATTGACGAGGC
GGCGATTGGCGACCGAACGTCAGATCCAAGAGAGCTCGTGCTGGAGCTTG
GATTGGCGAAAGCCAAGGCCCTCTTGCCGGTTCTCAAAGCTGAAGCAGAA
CGGGGTACCTTAGGTGCCGTATATCTGTTGACCGCCGATCAAGTTGTAGT
TCACGAGGGACGCATACTAGAGAAACCCGCTGATGAAGAAGAGGTCCGAC
GGAACATCGCCGGATATGCGATATCACCTTGCCGAACCGTCGGATCTGCA
GTCCTGACCAACGTGTTGACAGGGGAGCAGGTTTCAGGGGTCGATACAGC
TGAGGTCTCGTTCGCGGAGATATCACCTTGCCGAACCGTCGGATCTGCAG
TCCTGACCAACGTGTTGACAGGGGAGCAGGTTTCAGGGGTCGATACAGCT
GAGGTCTCGTTCGCGGAGATCCCTGAGACTGTGGTGGCGCAGCTGTGTAG
AGAAGGAACCGTATTCCGGTGTGCTGGTGGCCTGATGGTGGAGCATGAGA
TGGTGCAACCGTTCATCTTGAAGATTGATGGCACAATAGACTCAGTCATG
GGCTTGTCGAAGTCATTGGTGCTCAAGTTACTTGATCAGCTGTCTCCGCG
CACAGCTCCAACATAAATCCCTGAGACTGTGGTGGCGCAGCTGTGTAGAG
AAGGAACCGTATTCCGGTGTGCTGGTGGCCTGATGGTGGAGCATGAGATG
GTGCAACCGTTCATCTTGAAGATTGATGGCACAATAGACTCAGTCATGGG
CTTGTCGAAGTCATTGGTGCTCAAGTTACTTGATCAGCTGTCTCCGCGCA
CAGCTCCAACATAA
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