mRNA_H-paniculata_contig20899.5440.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20899.5440.1
Unique NamemRNA_H-paniculata_contig20899.5440.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig20899.5440.1 vs. uniprot
Match: D8LBM5_ECTSI (Similar to 20S proteasome alpha5 subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBM5_ECTSI)

HSP 1 Score: 306 bits (784), Expect = 2.720e-97
Identity = 162/221 (73.30%), Postives = 188/221 (85.07%), Query Frame = 1
Query:   25 QVEYAVQAAEKGGLTIGVQTEEGLVLAAQGRRRSSLLKRESVSKIANIDTC-ISCAMSGLLPDGRFLVDFARSWVQEHRFEFDEAPSVEVVSSQLSKLCLKFNGYDKDGKNG-GGREEDDG--LAMSRPMGVAFLLAGLDRG-KPVLYHLDPSGAYVQWRAKAIGEKSAAAEAKLEDAGPYEKMTLRTAMSTVLRVLEGVLGND-FSVESVEMVCVDASCG 669
            QVEYAV+AA+KGGLTIGVQT++GLVLAA GRRRS LLK  SVSKIA++D   + CAMSGLLPDGR L+D+AR+WVQEHRFEFDEAPSVE V+SQLS+L LKFNGYDKDGK G GGREE+DG   AMSRP+GVA L+AG+DRG +PVLYHLDPSGAYVQWRA+AIG+K AAAEAKLE  GP+E M++R AM+ VL VL  VLG+D FS + +EMVCVD   G
Sbjct:   51 QVEYAVEAADKGGLTIGVQTDKGLVLAAHGRRRSPLLKASSVSKIADVDDGRMCCAMSGLLPDGRLLLDYARTWVQEHRFEFDEAPSVEAVASQLSRLALKFNGYDKDGKAGNGGREEEDGGGPAMSRPVGVALLMAGVDRGDRPVLYHLDPSGAYVQWRARAIGDKGAAAEAKLEGVGPFEGMSVRRAMAAVLGVLREVLGDDEFSTDRLEMVCVDMMGG 271          
BLAST of mRNA_H-paniculata_contig20899.5440.1 vs. uniprot
Match: E9HGR7_DAPPU (Proteasome subunit alpha type n=8 Tax=Mandibulata TaxID=197563 RepID=E9HGR7_DAPPU)

HSP 1 Score: 171 bits (432), Expect = 4.350e-47
Identity = 97/214 (45.33%), Postives = 130/214 (60.75%), Query Frame = 1
Query:   16 RCRQVEYAVQAAEKGGLTIGVQTEEGLVLAAQGRRRSSLLKRESVSKIANIDTCISCAMSGLLPDGRFLVDFARSWVQEHRFEFDEAPSVEVVSSQLSKLCLKFNGYDKDGKNGGGREEDDGLAMSRPMGVAFLLAGLDRGKPVLYHLDPSGAYVQWRAKAIGEKSAAAEAKLEDAGPYEK-MTLRTAMSTVLRVLEGVLGNDFSVESVEMVCV 654
            R  QVEYA++A + G   IG+QT EG+VLA + R  S L++  ++ KI  ID  I CA+SGL+ D R +VD AR   Q H F +DE  SVE V+  +S L ++F           G  +DDG AMSRP GVA L AG+D   P L+H+DPSG YVQ+ AKAIG  S  A+  L++A  Y K MTL++AM   L +L+ V+    S  +VE+  V
Sbjct:   20 RLFQVEYAIEAIKLGSTAIGIQTSEGVVLAVEKRITSPLMEPTTIEKIVEIDKHIGCAVSGLMADSRTMVDRARVEAQNHWFTYDEKMSVESVAQAVSNLAIQF-----------GDSDDDGNAMSRPFGVAILFAGIDEKGPQLFHMDPSGTYVQYDAKAIGSGSEGAQQSLQEA--YNKSMTLKSAMKAALTILKQVMEEKLSSTNVEVAAV 220          
BLAST of mRNA_H-paniculata_contig20899.5440.1 vs. uniprot
Match: UPI0006B071AC (proteasome subunit alpha type-5-like n=2 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B071AC)

HSP 1 Score: 169 bits (428), Expect = 1.640e-46
Identity = 96/223 (43.05%), Postives = 134/223 (60.09%), Query Frame = 1
Query:   16 RCRQVEYAVQAAEKGGLTIGVQTEEGLVLAAQGRRRSSLLKRESVSKIANIDTCISCAMSGLLPDGRFLVDFARSWVQEHRFEFDEAPSVEVVSSQLSKLCLKFNGYDKDGKNGGGREEDDGLAMSRPMGVAFLLAGLDRGKPVLYHLDPSGAYVQWRAKAIGEKSAAAEAKLEDAGPYEK-MTLRTAMSTVLRVLEGVLGNDFSVESVEMVCVDASCGPNKG 681
            R  QVEYA++A + G   IG+QT EG++LA + R  S+L++  ++ KI  IDT I CA+SGL+ D R +VD AR   Q H F ++E   VE V+  +S L ++F           G  +DDG+AMSRP GVA L AG+D   P LYH+DPSG YVQ+ AKAIG  S  A+  L++   Y K MTL  A  T L++L+ V+    +  ++E+  V     P+KG
Sbjct:   20 RLFQVEYAIEAIKLGSTAIGIQTSEGVMLAVEKRVTSTLMESTTIEKIVEIDTHIGCAVSGLMADSRTMVDKARVEAQNHWFLYNEKMQVESVAQAVSNLAIRF-----------GDSDDDGIAMSRPFGVAILFAGIDERGPQLYHMDPSGTYVQYDAKAIGSGSEGAQQALQE--EYHKSMTLEEASKTALKILKQVMEEKLNSTNIEVAAVT----PDKG 225          
BLAST of mRNA_H-paniculata_contig20899.5440.1 vs. uniprot
Match: X8JTI9_9AGAM (Proteasome subunit alpha type n=5 Tax=Ceratobasidiaceae TaxID=5250 RepID=X8JTI9_9AGAM)

HSP 1 Score: 167 bits (422), Expect = 1.500e-45
Identity = 94/218 (43.12%), Postives = 133/218 (61.01%), Query Frame = 1
Query:   16 RCRQVEYAVQAAEKGGLTIGVQTEEGLVLAAQGRRRSSLLKRESVSKIANIDTCISCAMSGLLPDGRFLVDFARSWVQEHRFEFDEAPSVEVVSSQLSKLCLKFNGYDKDGKNGGGREEDDGLAMSRPMGVAFLLAGLDRGKPVLYHLDPSGAYVQWRAKAIGEKSAAAEAKLEDAGPYEKMTLRTAMSTVLRVLEGVLGNDFSVESVEMVCVDASCG 669
            R  QVEYA++A + G  T+G++T EG+VL  + R +SSLL+  S+ KI  IDT + CAMSGL  D R ++D AR   Q HRF +DEA  VE V+  +  L L+F         G   + +D + MSRP GVA L+AG+D   P LYH DPSG +V++ AKAIG  S AA+A+L+D   +++MTL  A S  L++L+ V+       +V++  V    G
Sbjct:   20 RLFQVEYAIEAIKLGSTTVGIKTPEGVVLGVEKRVQSSLLESSSIEKIMEIDTHLGCAMSGLTADARTMIDHARLTAQNHRFTYDEAIKVESVTQAVCDLALRF---------GESMDNEDAM-MSRPFGVALLIAGIDELGPQLYHTDPSGTFVRYEAKAIGSGSEAAQAELQDKY-HKQMTLLEARSLTLKILKQVMEEKLDHHNVQLAQVTLEKG 226          
BLAST of mRNA_H-paniculata_contig20899.5440.1 vs. uniprot
Match: A0A7J7JUL7_BUGNE (Proteasome subunit alpha type n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7JUL7_BUGNE)

HSP 1 Score: 166 bits (419), Expect = 3.490e-45
Identity = 96/232 (41.38%), Postives = 138/232 (59.48%), Query Frame = 1
Query:   16 RCRQVEYAVQAAEKGGLTIGVQTEEGLVLAAQGRRRSSLLKRESVSKIANIDTCISCAMSGLLPDGRFLVDFARSWVQEHRFEFDEAPSVEVVSSQLSKLCLKFNGYDKDGKNGGGREEDDGLAMSRPMGVAFLLAGLDRGKPVLYHLDPSGAYVQWRAKAIGEKSAAAEAKLEDAGPYEKMTLRTAMSTVLRVLEGVLGNDFSVESVEMVCVDASCG---PNKGQTESALE 702
            R  QVEYA++A + G   IG+QT EG+VLA + R  S L++ +S+ KI  +D+ + CAMSGL+ D R L+D AR   Q H F +DE  SVE V+  +S L L F   D D + G         AMSRP GVA L AG+D   P L+HLDPSG ++++ AKAIG  S  A+  L+D   ++ M L TA+  V+++L+ V+    + ++VE+  V  + G    NK Q E  ++
Sbjct:   20 RLFQVEYAIEAIKLGSTAIGLQTSEGVVLAVEKRVTSPLIEADSIEKIFEVDSHLGCAMSGLIADSRTLIDRARVEAQNHWFTYDEKMSVESVTQSVSNLALAFG--DDDAEPG---------AMSRPFGVALLFAGIDENGPQLFHLDPSGTFIRYDAKAIGSASEGAQQSLQDVF-HKSMNLETAIKEVMKILKQVMEEKLTSKNVELAIVTKADGFQRYNKQQLEDLVK 239          
BLAST of mRNA_H-paniculata_contig20899.5440.1 vs. uniprot
Match: A0A0D2U7G7_CAPO3 (Proteasome subunit alpha type n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2U7G7_CAPO3)

HSP 1 Score: 164 bits (416), Expect = 1.020e-44
Identity = 98/231 (42.42%), Postives = 131/231 (56.71%), Query Frame = 1
Query:   16 RCRQVEYAVQAAEKGGLTIGVQTEEGLVLAAQGRRRSSLLKRESVSKIANIDTCISCAMSGLLPDGRFLVDFARSWVQEHRFEFDEAPSVEVVSSQLSKLCLKFNGYDKDGKNGGGREEDDGLAMSRPMGVAFLLAGLDRGKPVLYHLDPSGAYVQWRAKAIGEKSAAAEAKLEDAGPYEKMTLRTAMSTVLRVLEGVLGNDFSVESVEMVCVDASCGP---NKGQTESAL 699
            R  QVEYA++A + G   IG+QT EG+VLA + R  S LL   S+ KI  +D  I CAMSGL  D R ++DF R   Q H F ++E+  VE V+  L  L L+F G D+D        +DD   MSRP GVA L+AG+D   P L+H DPSG + Q+ AKAIG  S  A+  L+DA  +  ++LR A    L  L+ V+    +  +VE+ CV A  G    NK Q E  +
Sbjct:   20 RLFQVEYAIEAIKLGSTAIGIQTTEGVVLAVEKRITSPLLVPTSIEKIVEVDRHIGCAMSGLTADARTMIDFGRLEAQNHWFTYNESIKVESVTQALCDLALRF-GEDQD--------DDDESTMSRPFGVALLIAGVDENGPQLFHTDPSGTFTQFDAKAIGSGSEGAQTALQDAY-HATLSLREAAILALSTLKQVMEEKLTATNVELACVTAERGYHVYNKAQLEELI 240          
BLAST of mRNA_H-paniculata_contig20899.5440.1 vs. uniprot
Match: A0A1Q3E886_LENED (Proteasome subunit alpha type n=4 Tax=Omphalotaceae TaxID=72117 RepID=A0A1Q3E886_LENED)

HSP 1 Score: 165 bits (417), Expect = 1.320e-44
Identity = 92/218 (42.20%), Postives = 129/218 (59.17%), Query Frame = 1
Query:   16 RCRQVEYAVQAAEKGGLTIGVQTEEGLVLAAQGRRRSSLLKRESVSKIANIDTCISCAMSGLLPDGRFLVDFARSWVQEHRFEFDEAPSVEVVSSQLSKLCLKFNGYDKDGKNGGGREEDDGLAMSRPMGVAFLLAGLDRGKPVLYHLDPSGAYVQWRAKAIGEKSAAAEAKLEDAGPYEKMTLRTAMSTVLRVLEGVLGNDFSVESVEMVCVDASCG 669
            R  QVEYA++A + G  T+GV+T+EG+VL  + R +S L++  S+ KI  ID  + CAMSGL  D R ++D AR   Q H F +DE   VE V+  +  L L+F          G    D+   MSRP GVA L+AG+D   P LYH DPSG +V+++AKAIG  S AA+A+L+D   + KMTLR A    LR+L+ V+       +V++  V  + G
Sbjct:   20 RLFQVEYAIEAIKLGSTTVGVRTDEGVVLGVEKRVQSPLIESSSIEKIMEIDAHLGCAMSGLTADARTMIDHARVTAQNHSFTYDEKIKVESVTQAVCDLALRF----------GESVHDEDAMMSRPFGVALLIAGIDELGPQLYHTDPSGTFVRYQAKAIGSGSEAAQAELQDKW-HSKMTLREAQLLTLRILKQVMEEKLDRHNVQLAQVTKANG 226          
BLAST of mRNA_H-paniculata_contig20899.5440.1 vs. uniprot
Match: UPI001B88D703 (proteasome subunit alpha type-5 n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88D703)

HSP 1 Score: 164 bits (415), Expect = 1.350e-44
Identity = 90/213 (42.25%), Postives = 129/213 (60.56%), Query Frame = 1
Query:   16 RCRQVEYAVQAAEKGGLTIGVQTEEGLVLAAQGRRRSSLLKRESVSKIANIDTCISCAMSGLLPDGRFLVDFARSWVQEHRFEFDEAPSVEVVSSQLSKLCLKFNGYDKDGKNGGGREEDDGLAMSRPMGVAFLLAGLDRGKPVLYHLDPSGAYVQWRAKAIGEKSAAAEAKLEDAGPYEKMTLRTAMSTVLRVLEGVLGNDFSVESVEMVCV 654
            R  QVEYA++A + G   IG+QT EG+VLA + R  S+L++  S+ KI  +D+ I CAMSGL+ D R L+D AR+  Q H F ++E  S+E V+  +S L L F           G ++ D  AMSRP GVA L AG+D   P L+H+DPSG ++Q+ AKAIG  S  A+  L++   ++ MTL+ A  + L +L+ V+    S  +VEM  V
Sbjct:   20 RLFQVEYAIEAIKLGSTAIGIQTSEGVVLAVEKRVTSTLIEPSSIEKIMEVDSHIGCAMSGLIADSRTLIDRARTEAQNHWFTYNEKMSIESVAQAVSNLALAF-----------GDDDADPAAMSRPFGVALLFAGIDSKGPQLFHMDPSGTFIQYDAKAIGSGSEGAQHSLQEVY-HKSMTLKAACKSALTILKQVMEEKLSSTNVEMATV 220          
BLAST of mRNA_H-paniculata_contig20899.5440.1 vs. uniprot
Match: A0A164U9T5_9AGAM (Proteasome subunit alpha type n=2 Tax=Sistotremastrum TaxID=139133 RepID=A0A164U9T5_9AGAM)

HSP 1 Score: 164 bits (414), Expect = 2.070e-44
Identity = 92/218 (42.20%), Postives = 128/218 (58.72%), Query Frame = 1
Query:   16 RCRQVEYAVQAAEKGGLTIGVQTEEGLVLAAQGRRRSSLLKRESVSKIANIDTCISCAMSGLLPDGRFLVDFARSWVQEHRFEFDEAPSVEVVSSQLSKLCLKFNGYDKDGKNGGGREEDDGLAMSRPMGVAFLLAGLDRGKPVLYHLDPSGAYVQWRAKAIGEKSAAAEAKLEDAGPYEKMTLRTAMSTVLRVLEGVLGNDFSVESVEMVCVDASCG 669
            R  QVEYA++A + G  T+GV+T +G+VL  + R +S LL+  SV KI  ID  + CAMSGL  D R ++D AR   Q H F +DE   VE V+  +  L L+F          G   ED+G  MSRP GVA L+AG+D   P L+H DPSG ++++ AKAIG  S AA+++L+D   + +MTL  A +  LRVL+ V+       +VE+  V    G
Sbjct:   20 RLFQVEYAIEAIKLGSTTVGVRTRDGVVLGVEKRTQSPLLESSSVEKIMEIDRHLGCAMSGLTADARTMIDHARVTSQNHAFTYDEKIKVESVTQSVCDLALRF----------GESVEDEGAMMSRPFGVALLIAGIDELGPQLFHTDPSGTFMRYEAKAIGSGSEAAQSELQDKY-HSQMTLEEAQNLTLRVLKQVMEEKLDQHNVELAQVTVDKG 226          
BLAST of mRNA_H-paniculata_contig20899.5440.1 vs. uniprot
Match: UPI0002658A20 (proteasome subunit alpha type-5 n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI0002658A20)

HSP 1 Score: 163 bits (413), Expect = 2.740e-44
Identity = 92/220 (41.82%), Postives = 129/220 (58.64%), Query Frame = 1
Query:   16 RCRQVEYAVQAAEKGGLTIGVQTEEGLVLAAQGRRRSSLLKRESVSKIANIDTCISCAMSGLLPDGRFLVDFARSWVQEHRFEFDEAPSVEVVSSQLSKLCLKFNGYDKDGKNGGGREEDDGLAMSRPMGVAFLLAGLDRGK-PVLYHLDPSGAYVQWRAKAIGEKSAAAEAKLEDAGPYEK-MTLRTAMSTVLRVLEGVLGNDFSVESVEMVCVDASCG 669
            R  QVEYA++A + G   IG+QT EG VLA + R  S L++  ++ KI  ID  I CA+SGL+ D R ++D AR   Q H F +DE+  VE  +  +S L +KF           G  +DDG AMSRP GVA L AG+D  K P L+H+DPSG YV++ AKAIG     A+  L++   Y K MTL+ A+  +L +L+ V+     V++VE+  +    G
Sbjct:   20 RLFQVEYAIEAIKLGSTAIGIQTSEGCVLAVEKRVTSPLMESTTIEKIVEIDKFIGCAVSGLMADSRTMIDKARVEAQNHWFNYDESMRVESCAQAVSNLAIKF-----------GDNDDDGTAMSRPFGVAILFAGIDEKKGPQLFHMDPSGTYVEFLAKAIGSGCEGAQQALQE--KYHKSMTLKEALKEILVILKQVMEEKLGVDNVEVATITKEAG 226          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20899.5440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBM5_ECTSI2.720e-9773.30Similar to 20S proteasome alpha5 subunit n=2 Tax=E... [more]
E9HGR7_DAPPU4.350e-4745.33Proteasome subunit alpha type n=8 Tax=Mandibulata ... [more]
UPI0006B071AC1.640e-4643.05proteasome subunit alpha type-5-like n=2 Tax=Limul... [more]
X8JTI9_9AGAM1.500e-4543.12Proteasome subunit alpha type n=5 Tax=Ceratobasidi... [more]
A0A7J7JUL7_BUGNE3.490e-4541.38Proteasome subunit alpha type n=1 Tax=Bugula nerit... [more]
A0A0D2U7G7_CAPO31.020e-4442.42Proteasome subunit alpha type n=1 Tax=Capsaspora o... [more]
A0A1Q3E886_LENED1.320e-4442.20Proteasome subunit alpha type n=4 Tax=Omphalotacea... [more]
UPI001B88D7031.350e-4442.25proteasome subunit alpha type-5 n=1 Tax=Gigantopel... [more]
A0A164U9T5_9AGAM2.070e-4442.20Proteasome subunit alpha type n=2 Tax=Sistotremast... [more]
UPI0002658A202.740e-4441.82proteasome subunit alpha type-5 n=1 Tax=Galendromu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20899contigH-paniculata_contig20899:804..2883 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score234.2
Seed ortholog evalue6.9e-59
Seed eggNOG ortholog2880.D8LBM5
Preferred namePSMA5
KEGG koko:K02729,ko:K12388
KEGG TC9.A.63.1.3
KEGG Pathwayko03050,ko04142,ko04722,ko04979,map03050,map04142,map04722,map04979
KEGG ModuleM00337,M00340
Hectar predicted targeting categoryother localisation
GOsGO:0000502,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005839,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0010499,GO:0012505,GO:0016020,GO:0016192,GO:0016579,GO:0019538,GO:0019773,GO:0019941,GO:0030141,GO:0030163,GO:0031410,GO:0031597,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032940,GO:0032991,GO:0034515,GO:0034774,GO:0036211,GO:0036230,GO:0042119,GO:0042175,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0050896,GO:0051179,GO:0051234,GO:0051603,GO:0060205,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0097708,GO:0099503,GO:0101002,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1904813,GO:1905368,GO:1905369
EggNOG free text desc.threonine-type endopeptidase activity
EggNOG OGsCOG0638@1,KOG0176@2759
Ec32 ortholog descriptionNucleophile aminohydrolases, N-terminal
Ec32 orthologEc-27_003410.1
EC3.4.25.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko02000,ko03051
Exons3
Model size1253
Cds size768
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20899.5440.1prot_H-paniculata_contig20899.5440.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20899 1100..2694 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929548.2418664-UTR-H-paniculata_contig20899:803..10991622929548.2418664-UTR-H-paniculata_contig20899:803..1099Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20899 804..1099 -
1691480908.8270192-UTR-H-paniculata_contig20899:803..10991691480908.8270192-UTR-H-paniculata_contig20899:803..1099Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20899 804..1099 -
1622929548.2931178-UTR-H-paniculata_contig20899:2694..28831622929548.2931178-UTR-H-paniculata_contig20899:2694..2883Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20899 2695..2883 -
1691480908.8633983-UTR-H-paniculata_contig20899:2694..28831691480908.8633983-UTR-H-paniculata_contig20899:2694..2883Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20899 2695..2883 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929548.2529986-CDS-H-paniculata_contig20899:1099..15871622929548.2529986-CDS-H-paniculata_contig20899:1099..1587Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20899 1100..1587 -
1691480908.8386407-CDS-H-paniculata_contig20899:1099..15871691480908.8386407-CDS-H-paniculata_contig20899:1099..1587Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20899 1100..1587 -
1622929548.2663903-CDS-H-paniculata_contig20899:1951..21841622929548.2663903-CDS-H-paniculata_contig20899:1951..2184Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20899 1952..2184 -
1691480908.8470063-CDS-H-paniculata_contig20899:1951..21841691480908.8470063-CDS-H-paniculata_contig20899:1951..2184Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20899 1952..2184 -
1622929548.280596-CDS-H-paniculata_contig20899:2647..26941622929548.280596-CDS-H-paniculata_contig20899:2647..2694Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20899 2648..2694 -
1691480908.8550098-CDS-H-paniculata_contig20899:2647..26941691480908.8550098-CDS-H-paniculata_contig20899:2647..2694Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20899 2648..2694 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20899.5440.1

>prot_H-paniculata_contig20899.5440.1 ID=prot_H-paniculata_contig20899.5440.1|Name=mRNA_H-paniculata_contig20899.5440.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=256bp
MSGLLPDGRFLVDFARSWVQEHRFEFDEAPSVEVVSSQLSKLCLKFNGYD
KDGKNGGGREEDDGLAMSRPMGVAFLLAGLDRGKPVLYHLDPSGAYVQWR
AKAIGEKSAAAEAKLEDAGPYEKMTLRTAMSTVLRVLEGVLGNDFSVESV
EMVCVDASCGPNKGQTESALEGGLHDDDKVVRSGGSRNAGKKSTFLATGA
DKDVDNAGNRDLGGKRGVVDAVARPNLFRRVSKDEMEALLLEEKKKRDGN
RNDGR*
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mRNA from alignment at H-paniculata_contig20899:804..2883-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20899.5440.1 ID=mRNA_H-paniculata_contig20899.5440.1|Name=mRNA_H-paniculata_contig20899.5440.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2080bp|location=Sequence derived from alignment at H-paniculata_contig20899:804..2883- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTCCGATTTGCGACCGTTGCCGGCAGGTTGAATACGCGGTCCAAGCGGC GGAGAAGGGAGGACTAACCATTGGCGTCCAAACAGAGGAGGGGTTGGTTT TGGCGGCCCAGGGCCGACGACGCTCGTCACTCCTGAAACGGGAGTCCGTG TCTAAGATCGCCAATATCGACACTTGCATATCTTGCGCCATGTCCGGTTT GCTCCCGGACGGCCGCTTCCTGGTTGACTTCGCGCGGTGGGTGCTGCTGA CCTTAATCGAAAAGCACGTATAAGATGAGGCACTAGCAGACAGGCCTCCC TTTTGCACACCTATTATGGAGTGCCCTCTTCCCGCATGCAAAGACATTCT CCGAGGTAGCCTACTCCAAAACCACTCACTGATTCGTCTGTGCTGAGCAC GAGATCCATAGGCCCGGTTACATGGCAGTGCATCGCCTACAGCATTTTGC GTACATCATTCTTCAGCGCCTGCAAGCACTAGCGCGTAACCTGCAAGCTA CTTTGAGGACTCGTGTCTCACACAACCCTTGTGTTATCTCTCTTGTAAAC CACGTGGCGCCCTTTCTCTTGTCATATTTTACTGCTATGCCTCATAAGGA ACACAACATTCCTTTTTTGCATTATTTTTTGCTGTTCAAATGTTCTTACG TTCCCGCCACCACCCGCGTCCGGTTGCTGATATCCGAACAAATGGAAAGG TCCTGGGTCCAGGAGCACCGGTTCGAGTTTGATGAAGCACCTAGCGTGGA GGTGGTCTCTTCTCAGCTCAGTAAGCTCTGCCTCAAGTTCAACGGTTACG ACAAGGACGGAAAGAATGGGGGTGGCAGAGAAGAGGACGACGGGCTGGCT ATGTCGAGACCTATGGGGGTGGCGTTTTTGCTGGCGGGATTGGATCGCGG CAAACCGGTTCTCTATCATCTCGATCCTTCCGGTATCTTGTGAATTTCTC CTTGCTTGCGCTCTGTTGATCGCCATCTAATTTACTAGACTACTGCAGAG AAACGACATTACCCTTGCTTTCAGACAATTAGCACGGCGGTGTACGCGGA GTGTTGTTCGGAGGGAGTTTGCCTGCTGATCATAATAACAATAGTTGATG CAATCAGCTATGGGTACATGATTTCCAATTGCACCGACTGAAAACCTCCC CTGGAATTTCGTTCTGGTGTCGACGCAATCCCATTTGTCTCACTGGGTGA TGGCCTGTCACACACTTTTGCTTTATTGCGTGTTTCGATACGTTGCGTAT CCAGCCGTTATTTTGATTCCGTACCCAAAATCTCTGCTTGCACCAGGAGC GTATGTGCAATGGAGGGCCAAAGCAATTGGCGAGAAGTCAGCCGCGGCAG AAGCCAAGTTGGAGGACGCCGGACCCTACGAGAAAATGACCCTGAGAACG GCCATGTCAACCGTGTTGAGAGTATTGGAGGGTGTACTGGGGAATGACTT CTCAGTGGAGTCGGTGGAGATGGTGTGCGTGGACGCATCGTGTGGGCCTA ACAAGGGACAAACAGAGTCTGCACTGGAAGGTGGACTACACGATGACGAC AAGGTTGTGAGATCTGGTGGTAGCCGAAACGCGGGAAAAAAATCAACATT TTTGGCGACTGGAGCAGACAAAGATGTTGACAATGCCGGGAATAGGGATT TGGGGGGTAAGCGGGGGGTAGTTGATGCGGTTGCTCGGCCGAATTTGTTT CGAAGAGTTAGCAAGGATGAGATGGAAGCATTGCTTTTGGAAGAAAAAAA GAAGCGGGATGGCAATCGAAACGATGGAAGGTGATCGTGCAAACTTGTTC TGGCACCACGGCACATGGGATTTTCCCACCAAATAGAAACTACGAGCATA CGAGATTCCAAATCTGAAACGTTTTTATGGAGGACCAACAAAGCATTTTC TCTCTAGGCATGGATGGATGATCATGAGTGCCTCTACAAAGGTTTGCAGC GCACGTACGTCAGAGGCTGCGTTGGGTGGCAGCGAACCGTAGTGTATTGA ACAGCCAGCTGTCGTTCATCCATTTTCACGAAGTAATCGGCAGGCTGTTG TCAACAAAGACGTGTGTGTAAACATTTCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig20899:804..2883-

>mRNA_H-paniculata_contig20899.5440.1 ID=mRNA_H-paniculata_contig20899.5440.1|Name=mRNA_H-paniculata_contig20899.5440.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1536bp|location=Sequence derived from alignment at H-paniculata_contig20899:804..2883- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCGGTTTGCTCCCGGACGGCCGCTTCCTGGTTGACTTCGCGCGATG
TCCGGTTTGCTCCCGGACGGCCGCTTCCTGGTTGACTTCGCGCGGTCCTG
GGTCCAGGAGCACCGGTTCGAGTTTGATGAAGCACCTAGCGTGGAGGTGG
TCTCTTCTCAGCTCAGTAAGCTCTGCCTCAAGTTCAACGGTTACGACAAG
GACGGAAAGAATGGGGGTGGCAGAGAAGAGGACGACGGGCTGGCTATGTC
GAGACCTATGGGGGTGGCGTTTTTGCTGGCGGGATTGGATCGCGGCAAAC
CGGTTCTCTATCATCTCGATCCTTCCGGTCCTGGGTCCAGGAGCACCGGT
TCGAGTTTGATGAAGCACCTAGCGTGGAGGTGGTCTCTTCTCAGCTCAGT
AAGCTCTGCCTCAAGTTCAACGGTTACGACAAGGACGGAAAGAATGGGGG
TGGCAGAGAAGAGGACGACGGGCTGGCTATGTCGAGACCTATGGGGGTGG
CGTTTTTGCTGGCGGGATTGGATCGCGGCAAACCGGTTCTCTATCATCTC
GATCCTTCCGGAGCGTATGTGCAATGGAGGGCCAAAGCAATTGGCGAGAA
GTCAGCCGCGGCAGAAGCCAAGTTGGAGGACGCCGGACCCTACGAGAAAA
TGACCCTGAGAACGGCCATGTCAACCGTGTTGAGAGTATTGGAGGGTGTA
CTGGGGAATGACTTCTCAGTGGAGTCGGTGGAGATGGTGTGCGTGGACGC
ATCGTGTGGGCCTAACAAGGGACAAACAGAGTCTGCACTGGAAGGTGGAC
TACACGATGACGACAAGGTTGTGAGATCTGGTGGTAGCCGAAACGCGGGA
AAAAAATCAACATTTTTGGCGACTGGAGCAGACAAAGATGTTGACAATGC
CGGGAATAGGGATTTGGGGGGTAAGCGGGGGGTAGTTGATGCGGTTGCTC
GGCCGAATTTGTTTCGAAGAGTTAGCAAGGATGAGATGGAAGCATTGCTT
TTGGAAGAAAAAAAGAAGCGGGATGGCAATCGAAACGATGGAAGGTGAGA
GCGTATGTGCAATGGAGGGCCAAAGCAATTGGCGAGAAGTCAGCCGCGGC
AGAAGCCAAGTTGGAGGACGCCGGACCCTACGAGAAAATGACCCTGAGAA
CGGCCATGTCAACCGTGTTGAGAGTATTGGAGGGTGTACTGGGGAATGAC
TTCTCAGTGGAGTCGGTGGAGATGGTGTGCGTGGACGCATCGTGTGGGCC
TAACAAGGGACAAACAGAGTCTGCACTGGAAGGTGGACTACACGATGACG
ACAAGGTTGTGAGATCTGGTGGTAGCCGAAACGCGGGAAAAAAATCAACA
TTTTTGGCGACTGGAGCAGACAAAGATGTTGACAATGCCGGGAATAGGGA
TTTGGGGGGTAAGCGGGGGGTAGTTGATGCGGTTGCTCGGCCGAATTTGT
TTCGAAGAGTTAGCAAGGATGAGATGGAAGCATTGCTTTTGGAAGAAAAA
AAGAAGCGGGATGGCAATCGAAACGATGGAAGGTGA
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