mRNA_H-paniculata_contig2087.5434.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2087.5434.1
Unique NamemRNA_H-paniculata_contig2087.5434.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2087.5434.1 vs. uniprot
Match: A0A6H5KZB1_9PHAE (RNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZB1_9PHAE)

HSP 1 Score: 226 bits (576), Expect = 7.970e-66
Identity = 117/133 (87.97%), Postives = 125/133 (93.98%), Query Frame = 1 
Query:   55 GPGRFADKSFYIGYGTTEEASFVEAAMQPRSVEKSRDGFAAGRLEEAILDVNPDEAVDMAKKQRLLHWDSRKKKYVKTTLAELGE-KGGGSRKIRTESGVVVSSKKAAHGEIYAKWKRSSNRKVGREGDEEEA 450
            GPGRFADK+FYIGYGTTE +SFVEAA+QPRSVEKS DGFAAGRLEEAILDVNPDEAVDMAKKQRLLHWDSRKKK+VKTTLAELGE K GGSRKIRTESGVVV +K A  GEIYAKWKR+SNR+VGREGDEEE+
Sbjct:  765 GPGRFADKAFYIGYGTTEASSFVEAALQPRSVEKSGDGFAAGRLEEAILDVNPDEAVDMAKKQRLLHWDSRKKKFVKTTLAELGERKTGGSRKIRTESGVVVKAKNAPQGEIYAKWKRASNRQVGREGDEEES 897
[Close]
BLAST of mRNA_H-paniculata_contig2087.5434.1 vs. uniprot
Match: A0A835Z3G9_9STRA (RNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3G9_9STRA)

HSP 1 Score: 161 bits (408), Expect = 6.620e-43
Identity = 80/127 (62.99%), Postives = 101/127 (79.53%), Query Frame = 1 
Query:   64 RFADKSFYIGYGTTEEASFVEAAMQPRSVEKSRDGFAAGRLEEAILDVNPDEAVDMAKKQRLLHWDSRKKKYVKTTLAELGEKGGGSRKIRTESGVVVSSKKAAHGEIYAKWKRSSNRKVGREGDEE 444
            RFAD   +IGYG TE  +FVE AMQPRSVEK+ DGFA  RL EA+LDVNPDEAVDM +KQR+LHWD+RK K+VKT+LAE+ +     R +R E+GV+V++KK   GEI++KW++ S R+VGREGDEE
Sbjct:  706 RFADPEHFIGYGVTEAGAFVEGAMQPRSVEKAGDGFATDRLAEAMLDVNPDEAVDMVRKQRVLHWDARKHKFVKTSLAEMSDNK--KRTVRNEAGVMVTAKKQKAGEIFSKWQKKSRREVGREGDEE 830
[Close]
BLAST of mRNA_H-paniculata_contig2087.5434.1 vs. uniprot
Match: W7TM98_9STRA (RNA helicase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TM98_9STRA)

HSP 1 Score: 137 bits (346), Expect = 1.540e-34
Identity = 68/132 (51.52%), Postives = 93/132 (70.45%), Query Frame = 1 
Query:   67 FADKSFYIGYGTTEEASFVEAAMQPRSVEKSRDGFAAGRLEEAILDVNPDEAVDMAKKQRLLHWDSRKKKYVKTTLAELGEKGGGSRKIRTESGVVVSSKKAAHGEIYAKWKRSSNRKVGREGDEEEASLKG 462
            + D + +I YG TE    VE  +QPRSVEK  +   A RLEEA+LDV PDEA++M K++R++HWD+RKKKYV+ T++ELGE G G +K+RTESGV VS    A GEIY KW++ +N+ V   G +E+   +G
Sbjct:  758 YKDPNHFIEYGVTEHDQMVEDRLQPRSVEKGSEALLANRLEEALLDVQPDEALEMVKRKRIMHWDARKKKYVRATMSELGE-GRGQKKLRTESGVTVSGSSQATGEIYKKWQKRTNKTVSLAGGDEDDGNEG 888
[Close]
BLAST of mRNA_H-paniculata_contig2087.5434.1 vs. uniprot
Match: A0A7S4DFA2_HETAK (RNA helicase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DFA2_HETAK)

HSP 1 Score: 120 bits (300), Expect = 4.760e-31
Identity = 63/136 (46.32%), Postives = 92/136 (67.65%), Query Frame = 1 
Query:   67 FADKSFYIGYG----TTEEASFVEAAMQPRSVEKSRDGFAAGRLEEAILDVNPDEAVDMAKKQRLLHWDSRKKKYVKTTLAELGEKGGGSRKIRTESGVVVSSKKAAHGEIYAKWKRSSNRKVGREGDEEEASLKG 462
            F D+  +IGYG     +E  +FVE A+QP+S  K  +      LE+++LD+NPD A +M KK++ +HWD+RKKKY+KTT+ EL ++ G S K+RTESG +V+ K    GE+Y KWK  ++++V  EG EEEA+  G
Sbjct:   59 FRDEENFIGYGGKAERSERENFVEGALQPKSDTKESEKGIMSLLEDSLLDINPDTAQEMHKKKQFMHWDARKKKYIKTTVQELAKQRGNS-KLRTESGAIVNKKVVPTGELYQKWKSKTHKEVAGEGIEEEAADTG 193
[Close]
BLAST of mRNA_H-paniculata_contig2087.5434.1 vs. uniprot
Match: A0A484EF95_BRELC (RNA helicase n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EF95_BRELC)

HSP 1 Score: 99.0 bits (245), Expect = 4.950e-22
Identity = 60/127 (47.24%), Postives = 79/127 (62.20%), Query Frame = 1 
Query:   67 FADKSFYIGYGTTEEASFVEAAMQPRSVEKSRDGFAAGRLEEAILDVNPDEAVDMAKKQRLLHWDSRKKKYVKTTLAELGEKGGGSRKIRTESGVVVSSKKAAHGEIYAKWKRSSNRKVGREGDEEE 447
            F D   YIGY    E++ +E  +   +     + FA  RLEEAILDVNPDEA++M KK+R+LHWD RKKK+VKTT  EL  +G  + K R ESGV    KK   GE+Y KW++  +++V   G E E
Sbjct:   76 FKDDDNYIGYMKDGEST-IEGFLATNADGGKVNAFAEARLEEAILDVNPDEAIEMNKKRRILHWDVRKKKFVKTTAGELTSQG--TLKRRNESGVNF-RKKQQFGEVYRKWQQKQHKRVAGGGMEVE 198
[Close]
BLAST of mRNA_H-paniculata_contig2087.5434.1 vs. uniprot
Match: A0A5D6Y2F7_9STRA (RNA helicase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y2F7_9STRA)

HSP 1 Score: 101 bits (252), Expect = 6.520e-22
Identity = 61/133 (45.86%), Postives = 81/133 (60.90%), Query Frame = 1 
Query:   67 FADKSFYIGYGTTEEASFVEAAMQPRSVEKSR-DGFAAGRLEEAILDVNPDEAVDMAKKQRLLHWDSRKKKYVKTTLAELGEKGGGSRKIRTESGVVVSSKKAAHGEIYAKWKRSSNRKVGREGDEEEASLKG 462
            F D+  YIGY   ++          R  E  + + F   RLEEAILDVNPDEA+++ KK+R+LHWD RKKK+VKTT  EL  +G  + K R ESGV V  KK   G IY KW++  N++V   G+E+E +  G
Sbjct:  695 FVDREHYIGY--LKDGEHATEEFLARGAEGGKVNSFQEARLEEAILDVNPDEAIELNKKRRILHWDVRKKKFVKTTAGELTAQG--TLKRRNESGVSVRKKKEV-GAIYKKWQQRQNKRVFTGGEEDEDAAGG 822
[Close]
BLAST of mRNA_H-paniculata_contig2087.5434.1 vs. uniprot
Match: D0N6Y7_PHYIT (RNA helicase n=6 Tax=Phytophthora TaxID=4783 RepID=D0N6Y7_PHYIT)

HSP 1 Score: 99.8 bits (247), Expect = 3.030e-21
Identity = 60/132 (45.45%), Postives = 81/132 (61.36%), Query Frame = 1 
Query:   55 GPGRFADKSFYIGYGTTEEASFVEAAMQPRSVEKSR-DGFAAGRLEEAILDVNPDEAVDMAKKQRLLHWDSRKKKYVKTTLAELGEKGGGSRKIRTESGVVVSSKKAAHGEIYAKWKRSSNRKVGREGDEEE 447
            G   F D   YIGY   ++  +       ++ +  + + FA  RLEEAILDVNPDEA++M KK+R+LHWD RKKK+VKTT  EL  +G  + K R ESGV V  KK   GE+Y KW++  +++V   G E E
Sbjct:  631 GDASFKDDENYIGY--MKDGDYTTEGFLAKNADGGKVNAFAEARLEEAILDVNPDEAIEMNKKRRILHWDVRKKKFVKTTAGELTSQG--TLKRRNESGVSV-RKKQQVGEVYRKWQQKQHKRVAGGGVEVE 757
[Close]
BLAST of mRNA_H-paniculata_contig2087.5434.1 vs. uniprot
Match: A0A7S0STQ5_9STRA (RNA helicase n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0STQ5_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 4.840e-21
Identity = 50/127 (39.37%), Postives = 86/127 (67.72%), Query Frame = 1 
Query:   67 FADKSFYIGYGTTEE-ASFVEAAMQPRSVEKSRDGFAAGRLEEAILDVN-----PDEAVDMAKKQRLLHWDSRKKKYVKTTLAELGEKGG-GSRKIRTESGVVVSSKKAAHGEIYAKWKRSSNRKVG 426
            F D  +Y+ YGT +E A++ E ++QP+S  KS +  +A  LE A+LD+       D  ++  KK+++ HWD +K+K+VK T+ E+ + G  G++++R+ESG++VSS K   GE+Y KWK+ ++R++G
Sbjct:  106 FRDNKYYMTYGTEDERANYAEESLQPKSNLKSSEAQSAAMLESALLDLTGNTYLQDNTLENNKKKKITHWDEKKRKFVKQTIEEMAQSGRKGTKRLRSESGILVSSNKKK-GEMYEKWKKKNHREIG 231
[Close]
BLAST of mRNA_H-paniculata_contig2087.5434.1 vs. uniprot
Match: A0A662XA09_9STRA (RNA helicase (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XA09_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 6.080e-21
Identity = 56/120 (46.67%), Postives = 78/120 (65.00%), Query Frame = 1 
Query:   67 FADKSFYIGYGTTEEASFVEAAMQPRSVEKSR-DGFAAGRLEEAILDVNPDEAVDMAKKQRLLHWDSRKKKYVKTTLAELGEKGGGSRKIRTESGVVVSSKKAAHGEIYAKWKRSSNRKV 423
            F D+  YIGY   ++  +       ++ +  + + FA  RLEEAILDVNPDEA++M KK+R+LHWD RKKK+VKTT  EL  +G  + K R ESGV V  KK   GE+Y KW++  +++V
Sbjct:  310 FKDRENYIGY--MKDGDYTTEGFLAKNADGGKVNAFAEARLEEAILDVNPDEAIEMNKKRRILHWDVRKKKFVKTTAGELTSQG--TLKRRNESGVSV-RKKQQVGEVYRKWQQKQHKRV 424
[Close]
BLAST of mRNA_H-paniculata_contig2087.5434.1 vs. uniprot
Match: H3GSH8_PHYRM (RNA helicase n=20 Tax=Peronosporaceae TaxID=4777 RepID=H3GSH8_PHYRM)

HSP 1 Score: 98.2 bits (243), Expect = 1.040e-20
Identity = 59/128 (46.09%), Postives = 80/128 (62.50%), Query Frame = 1 
Query:   67 FADKSFYIGYGTTEEASFVEAAMQPRSVEKSR-DGFAAGRLEEAILDVNPDEAVDMAKKQRLLHWDSRKKKYVKTTLAELGEKGGGSRKIRTESGVVVSSKKAAHGEIYAKWKRSSNRKVGREGDEEE 447
            F D   YIGY   ++  +       ++ +  + + FA  RLEEAILDVNPDEA++M KK+R+LHWD RKKK+VKTT  EL  +G  + K R ESGV V  KK   GE+Y KW++  +++V   G E E
Sbjct:  620 FKDDDNYIGY--MKDGDYTTEGFLSKNADGGKVNAFAEARLEEAILDVNPDEAIEMNKKRRILHWDVRKKKFVKTTAGELTSQG--TLKRRNESGVNV-RKKQQVGEVYRKWQQKQHKRVAGGGVEIE 742
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2087.5434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZB1_9PHAE7.970e-6687.97RNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
A0A835Z3G9_9STRA6.620e-4362.99RNA helicase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
W7TM98_9STRA1.540e-3451.52RNA helicase n=2 Tax=Monodopsidaceae TaxID=425072 ... [more]
A0A7S4DFA2_HETAK4.760e-3146.32RNA helicase (Fragment) n=1 Tax=Heterosigma akashi... [more]
A0A484EF95_BRELC4.950e-2247.24RNA helicase n=1 Tax=Bremia lactucae TaxID=4779 Re... [more]
A0A5D6Y2F7_9STRA6.520e-2245.86RNA helicase n=1 Tax=Pythium brassicum TaxID=14850... [more]
D0N6Y7_PHYIT3.030e-2145.45RNA helicase n=6 Tax=Phytophthora TaxID=4783 RepID... [more]
A0A7S0STQ5_9STRA4.840e-2139.37RNA helicase n=1 Tax=Chromulina nebulosa TaxID=967... [more]
A0A662XA09_9STRA6.080e-2146.67RNA helicase (Fragment) n=2 Tax=Nothophytophthora ... [more]
H3GSH8_PHYRM1.040e-2046.09RNA helicase n=20 Tax=Peronosporaceae TaxID=4777 R... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2087contigH-paniculata_contig2087:8017..10499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score174.9
Seed ortholog evalue3.2e-41
Seed eggNOG ortholog2880.D7FRK6
KEGG koko:K14808
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATP-dependent RNA helicase activity
EggNOG OGsCOG0513@1,KOG0337@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Exons4
Model size503
Cds size501
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2087.5434.1prot_H-paniculata_contig2087.5434.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2087 8018..10499 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929547.3382454-CDS-H-paniculata_contig2087:8017..81721622929547.3382454-CDS-H-paniculata_contig2087:8017..8172Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2087 8018..8172 -
1691480908.3625154-CDS-H-paniculata_contig2087:8017..81721691480908.3625154-CDS-H-paniculata_contig2087:8017..8172Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2087 8018..8172 -
1622929547.35346-CDS-H-paniculata_contig2087:8850..90071622929547.35346-CDS-H-paniculata_contig2087:8850..9007Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2087 8851..9007 -
1691480908.3723676-CDS-H-paniculata_contig2087:8850..90071691480908.3723676-CDS-H-paniculata_contig2087:8850..9007Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2087 8851..9007 -
1622929547.3668199-CDS-H-paniculata_contig2087:9956..100411622929547.3668199-CDS-H-paniculata_contig2087:9956..10041Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2087 9957..10041 -
1691480908.383446-CDS-H-paniculata_contig2087:9956..100411691480908.383446-CDS-H-paniculata_contig2087:9956..10041Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2087 9957..10041 -
1622929547.3822944-CDS-H-paniculata_contig2087:10395..104991622929547.3822944-CDS-H-paniculata_contig2087:10395..10499Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2087 10396..10499 -
1691480908.3973365-CDS-H-paniculata_contig2087:10395..104991691480908.3973365-CDS-H-paniculata_contig2087:10395..10499Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2087 10396..10499 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2087.5434.1

>prot_H-paniculata_contig2087.5434.1 ID=prot_H-paniculata_contig2087.5434.1|Name=mRNA_H-paniculata_contig2087.5434.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=167bp
ELIGDEGGGTGPLIGNGNGPGRFADKSFYIGYGTTEEASFVEAAMQPRSV
EKSRDGFAAGRLEEAILDVNPDEAVDMAKKQRLLHWDSRKKKYVKTTLAE
LGEKGGGSRKIRTESGVVVSSKKAAHGEIYAKWKRSSNRKVGREGDEEEA
SLKGTVSGGGGGWGSGG
back to top

mRNA from alignment at H-paniculata_contig2087:8017..10499-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2087.5434.1 ID=mRNA_H-paniculata_contig2087.5434.1|Name=mRNA_H-paniculata_contig2087.5434.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2483bp|location=Sequence derived from alignment at H-paniculata_contig2087:8017..10499- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCTAATTGGTGACGAGGGCGGGGGGACAGGGCCGCTGATTGGGAACGG
TAATGGACCCGGACGATTTGCGGATAAATCTTTCTATATTGGCTACGGGA
CGACGTGAGTAGTGTGTATGGGGAGTACAGGGAGAGAGGGAGCACTGTCT
CGGCGTTTTGTTTTTCTGAAGTCCCGTTGGCCATCGTGTTATTCCCGAAA
TACCCAATACCGAATACTGAATACCGTTTGTTACCGAGATGTTGTTCCCA
AGGAGTATACCTTTATCATGGTACTTTTAGAAGACTACTTTCCTCCATGG
CACCCGTTTTATACGCGGTTTTAAGAAAAATAAATAAATATATATATATA
TATATTTATCGAGAAAACCCTGCTTTTTTCGGTTGCTAATTGTCTTGGCT
TGGATATCGTTGCTTTTCTTTGCTGCTTACCTTTCTTCGTTTTTGTTCGT
ATTTTTAGGGAAGAAGCTTCGTTCGTGGAGGCGGCGATGCAGCCTAGATC
GGTAGAAAAATCAAGGGATGGATTCGCTGCGGGACGCCTAGAGGTACGTT
ATTGCCCAATCAAAGTACCTTGAATTTGAAACGTGGGGGTATCGCATGGG
AATCCGAATATTGTTTTTACATGATTGATCTGGAGAACTATGGCACCAAC
TGGTAACGAGTGGTGTGTAGTTGGAAATGTCGTGCGGAGATCTATTTGTC
GATTGATGGTTTCTTTCAACAGTATCATGTCCTGTTTCCGAGATGGTCGT
ATTTTAAAAACAAGCATCGTGTTCTCATAGAACGTAAAAAATGCCGCCAA
AGTCGACGTCTGGTTCGTACAAGCAGCGTTGTAAGCTAACGAACCTCGCA
ATGTTGTTTTCAGCCTGTACGTACGTCATTATCCAAATGGTTTACACTTC
GCGCGCGTTTTACCTGTTCTCGCCTCGCTTGTTGCGTTGTAACGTATAGA
CTTCTGGTTTGTCGGGGGCTCTGTTGGGTCCTTATCTAGTAAATATTTCA
GGTTTATACGGTGTGGTATGGTCAGTGCTTCAGTATGTTGGTCGATATAT
TTAGTACAGTACAGTATCCCAGTTTACGACATTCACTGATCCCGGCACTA
CAGTATAATCGCTACAGTGCAGTACAGTCAGGTGCACGATGGTACATAAC
AGTGCGACAAGGCCACTCATGGATGTATAGCCGTGGGATGAAAAGGATAA
TGATCGATTCGTGCGGGTGACAATCCAGCTTTTTTAAAAGGTTGTGCCCC
GAACGGGTTAACAGGCGATATAAATAGTTCACCTGCCCCTTATTGGTCAT
GATCCAATTTTGCTGATAAGTGTATACAAGTGCAAATTAAAGTCAGCTGT
ATAACCTCAGTATGGGTACAACGGACTTATGACGAACTTATCACAGCCAC
TGCTGTAAATACAATAGTCGATGATGGCCTATATTTTCTCGTGTGGCGGG
GCGGGTTGTGTTCGGGCGGGATGACATATGGCAACACGGCAGGAAGCTAT
TTTGGACGTGAATCCTGACGAAGCGGTAGACATGGCGAAGAAGCAGCGGC
TGCTACACTGGGATTCTCGCAAGAAGAAGTACGTCAAGACTACCTTGGCC
GAGCTGGGCGAGAAGGGGGGAGGCTCCCGGAAAATCAGAACCGAAAGTGG
TGAGTTAAGGGGAGTAGGAGGGAGGGAGGGGGGGTCATGACTCCTCTCCT
TTGATCCACCGGCATTCCTGCTTCTTGAGTCAATCCACTTCACACACAGT
TAATTGAACTCTAGGTCTCATGCTCATGTAAAAGACTCTATTGTGCCCAT
GTTGAGGTTATGCAGGTAGGTGACTTATAAGTTGACATGTATACACTTGA
TGTATCAGCAATATTAGATGTGAAAGGTGGGGGATCAATGCGACACTGTC
TTTCAGTCATCGTATTTGTGCACTTGTTTTAGGTTGTATATACACAATGC
TGTTTCATCCGTTAACGAACAGCTGCACCCAATCGCTGCCCCCCCCCCCT
CCCCCCCCCTCGCGAGTGTAAGCAGTTATTCTATCCGCGTATCTTATGTA
GCTTTTGAGAGCAGGTGCACAATAACTCCAAAGTACGATGGAAGAAATGC
AAAGTTTCCTGAGTGTCCTGTTGCAGTGACCACATTTTTTTTTTTCTTTT
CTTCTCGTGAGCCTTTTTGGCCGAAAATTATGCGTGAAGTCAATTTAGTT
GATACCACCATTTCGTTCCTGCACTACACTACAATACACTACAATACACT
TATCGTACAGCTTCGGATGTTGCTCAAGACATGTTACATGAACCCCCCTC
CATCCCTCCCCCCCCCCAACTCAATAGGAGTCGTCGTGAGCTCGAAGAAA
GCAGCGCATGGCGAGATCTACGCCAAGTGGAAGCGTTCGTCTAACCGTAA
GGTCGGACGCGAGGGTGATGAGGAAGAGGCATCGCTCAAGGGTACCGTTA
GTGGCGGCGGTGGCGGATGGGGTTCCGGTGGTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2087:8017..10499-

>mRNA_H-paniculata_contig2087.5434.1 ID=mRNA_H-paniculata_contig2087.5434.1|Name=mRNA_H-paniculata_contig2087.5434.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1002bp|location=Sequence derived from alignment at H-paniculata_contig2087:8017..10499- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCTAATTGGTGACGAGGGCGGGGGGACAGGGCCGCTGATTGGGAACGG
TAATGGACCCGGACGATTTGCGGATAAATCTTTCTATATTGGCTACGGGA
CGACGAGCTAATTGGTGACGAGGGCGGGGGGACAGGGCCGCTGATTGGGA
ACGGTAATGGACCCGGACGATTTGCGGATAAATCTTTCTATATTGGCTAC
GGGACGACGGAAGAAGCTTCGTTCGTGGAGGCGGCGATGCAGCCTAGATC
GGTAGAAAAATCAAGGGATGGATTCGCTGCGGGACGCCTAGAGGGAAGAA
GCTTCGTTCGTGGAGGCGGCGATGCAGCCTAGATCGGTAGAAAAATCAAG
GGATGGATTCGCTGCGGGACGCCTAGAGGAAGCTATTTTGGACGTGAATC
CTGACGAAGCGGTAGACATGGCGAAGAAGCAGCGGCTGCTACACTGGGAT
TCTCGCAAGAAGAAGTACGTCAAGACTACCTTGGCCGAGCTGGGCGAGAA
GGGGGGAGGCTCCCGGAAAATCAGAACCGAAAGTGGAAGCTATTTTGGAC
GTGAATCCTGACGAAGCGGTAGACATGGCGAAGAAGCAGCGGCTGCTACA
CTGGGATTCTCGCAAGAAGAAGTACGTCAAGACTACCTTGGCCGAGCTGG
GCGAGAAGGGGGGAGGCTCCCGGAAAATCAGAACCGAAAGTGGAGTCGTC
GTGAGCTCGAAGAAAGCAGCGCATGGCGAGATCTACGCCAAGTGGAAGCG
TTCGTCTAACCGTAAGGTCGGACGCGAGGGTGATGAGGAAGAGGCATCGC
TCAAGGGTACCGTTAGTGGCGGCGGTGGCGGATGGGGTTCCGGTGGTGAG
TCGTCGTGAGCTCGAAGAAAGCAGCGCATGGCGAGATCTACGCCAAGTGG
AAGCGTTCGTCTAACCGTAAGGTCGGACGCGAGGGTGATGAGGAAGAGGC
ATCGCTCAAGGGTACCGTTAGTGGCGGCGGTGGCGGATGGGGTTCCGGTG
GT
back to top