mRNA_H-paniculata_contig20869.5432.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20869.5432.1
Unique NamemRNA_H-paniculata_contig20869.5432.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20869.5432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20869contigH-paniculata_contig20869:441..2526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size232
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929547.067664-CDS-H-paniculata_contig20869:440..5631622929547.067664-CDS-H-paniculata_contig20869:440..563Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20869 441..563 -
1691480908.3036964-CDS-H-paniculata_contig20869:440..5631691480908.3036964-CDS-H-paniculata_contig20869:440..563Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20869 441..563 -
1622929547.0822937-CDS-H-paniculata_contig20869:2418..25261622929547.0822937-CDS-H-paniculata_contig20869:2418..2526Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20869 2419..2526 -
1691480908.3133907-CDS-H-paniculata_contig20869:2418..25261691480908.3133907-CDS-H-paniculata_contig20869:2418..2526Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20869 2419..2526 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20869.5432.1prot_H-paniculata_contig20869.5432.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20869 441..2526 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20869.5432.1

>prot_H-paniculata_contig20869.5432.1 ID=prot_H-paniculata_contig20869.5432.1|Name=mRNA_H-paniculata_contig20869.5432.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
ASRAVTAAAVVVVVVGGGGDAAALPRYWKTVPAIIKGSNQGRQFYTCARP
DSERCQIFIWADENMGGTQHSGDGSGG
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mRNA from alignment at H-paniculata_contig20869:441..2526-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20869.5432.1 ID=mRNA_H-paniculata_contig20869.5432.1|Name=mRNA_H-paniculata_contig20869.5432.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2086bp|location=Sequence derived from alignment at H-paniculata_contig20869:441..2526- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCATCTCGGGCAGTGACGGCCGCCGCTGTCGTCGTCGTCGTCGTTGGTGG
TGGTGGTGATGCTGCTGCTCTTCCACGCTATTGGAAAACGGTACCTGCAA
TAATCAAGGTACGCTTTCGGGATGGAGCATCGTAACTGATAAATGGGTGA
TGAGGAAATGGTCGTATCTAGCAGCCTCGAAGATATATGTGCACGGTAGA
CCGTGCGACTCCTTTGACTACAGTAACTCTCCAGCTGTGCACTAACCATT
CATTTAGTTCTAGACTACGATAGCTATGAGTTCGCCAACCGAAAGGTGTG
GCACACACAGACGCCCGACCTGCAGAGAGATGCAACAGGCCAACTCAGCG
TAAGATGTTTCCCGCAAAGTATACCAGAACAGAACCCCCTCCACGATGCA
ATGGTTTCCCACAGTTCGATTCTCTTAAAAGATGCACTAGCCAAACCTGG
GGCTCATGTTGTGAAGAGCTAAAAAAACACCAGAAGCAACACATGCGGTT
GTTTTGAAAATAGACAGCTTCACCGTGCACGCGCCATCGCCAATACATGT
TCGCTTTCGACACATTGCTGTAAACACGCCTCAAATGGAAATGAGATGCC
TATGTTTCCGTCTCCAACGACGTACCACTTCAAACCAGTGCACCGCAATG
TGTAACTACGGCAGCACACAGAGGGCACACTGCCTGCCGCCGATCACCTT
CTTTAACTAATGAGCGCCGAAAAATGCAGTTGACCCTCACATTATGGGGG
GTGTGCCCTGTATTTAAGTTGAAAAGAACAGTTGACTGATACAAGTCATG
TACTAGAGAGGAAACTACATGTAGTAAAGCATTTCGAAAGGGCTTCACTC
GCCGGAGAAGGTAGTACTATTATAGTAGTAATCGAAGCGACCGAAACAAA
GATCAGATTTTGAGCGATGTGGCTCACTTCAACTCAAAGCCGTACCACAG
TATCTAGATATATATACTCATTTTTGCATTTGCAAATCTGTTAAAAACGT
TCCGTCCATATTTGCGTCATTGCACATTTCAATGACCCTATGCCCGTGGC
GGAAATTTGCAAATCTGTCGAAAACCCGTCCAAAATTGCCTTCTTTCACA
TTTCCCACAAATACAGACCCGGCACAAAACACTCCCAGCTCACGGTCATT
CCTAGCGGGCGTTTTTTTGGGGGGAAATGTGCAATGATGCAATTCTGGAC
GGTTTTTCGCCAGATTTGCAAATTTCGGCCGCGGGCATACGGAAATTTGT
ACACAGGCGGAAATGTCGAATCACACGACGGAGGATATCGATATCTAATG
CACCGTGCCCATTGCTTGGCACCAACTACTGCAAGGGTGGTGGTGTGTGT
TATGGTTATCATAGGAGCGCTGCCACCAACAAGATATTGTGCGAAAAACA
TCGTCGTCGGGTTGGGCATGTGCTTTGCATTATTTGTACCTGGCCTGTAT
CGTTTGACCCTTCAGGTTTGGAAAAATGATGATACAGACAGTGCAAAGAA
CGCGCCTGACAAGACAACGATGGTTCTAGGCCTCGGGCTTGTTGATGTAG
CACTCGTGTGATGATCACAAGGCATGCCACGGCTCTCGCAGTGGTTGGTG
GCGTGCGCTGGGCACTCTGTGTTCGATATTCCGGTGTCCCCACATGTAAA
AACTGCGCTGCATACCGTAGAATTGACGGAACTTCGTCTCTTAAATTTAC
TTTTACATTATTTGACAATTTTCCACCAAAAGACGCGCGCTAGGGATGAC
CCTCAGAATCCCGAACATACCTAGATATTATACATACTCATTTGGAGCTG
CAGAAATAGAAGAAGTCAGTAATGAGGCGCCGCTTTTATGAATCTGAAAA
TGGACTTCTTGAAATATATGCTGAAAACATTGTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTTCCTCGCTTGGCTCTAACCGAACGCACGCTT
CCCTCACTCGCAGGGGTCAAATCAGGGACGACAGTTCTACACCTGCGCAC
GACCCGACAGTGAGCGATGTCAGATCTTCATATGGGCAGACGAAAACATG
GGCGGCACCCAGCACAGCGGAGACGGGAGTGGGGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig20869:441..2526-

>mRNA_H-paniculata_contig20869.5432.1 ID=mRNA_H-paniculata_contig20869.5432.1|Name=mRNA_H-paniculata_contig20869.5432.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig20869:441..2526- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCATCTCGGGCAGTGACGGCCGCCGCTGTCGTCGTCGTCGTCGTTGGTGG
TGGTGGTGATGCTGCTGCTCTTCCACGCTATTGGAAAACGGTACCTGCAA
TAATCAAGGCATCTCGGGCAGTGACGGCCGCCGCTGTCGTCGTCGTCGTC
GTTGGTGGTGGTGGTGATGCTGCTGCTCTTCCACGCTATTGGAAAACGGT
ACCTGCAATAATCAAGGGGTCAAATCAGGGACGACAGTTCTACACCTGCG
CACGACCCGACAGTGAGCGATGTCAGATCTTCATATGGGCAGACGAAAAC
ATGGGCGGCACCCAGCACAGCGGAGACGGGAGTGGGGGCGGGTCAAATCA
GGGACGACAGTTCTACACCTGCGCACGACCCGACAGTGAGCGATGTCAGA
TCTTCATATGGGCAGACGAAAACATGGGCGGCACCCAGCACAGCGGAGAC
GGGAGTGGGGGC
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