mRNA_H-paniculata_contig20862.5428.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20862.5428.1
Unique NamemRNA_H-paniculata_contig20862.5428.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig20862.5428.1 vs. uniprot
Match: D8LNX9_ECTSI (MFS_1_like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNX9_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 3.970e-51
Identity = 90/107 (84.11%), Postives = 100/107 (93.46%), Query Frame = 1
Query:   31 RIGHLGAITPAMTFIFTPLWGALTDKSGKLKQILVLTFTASALLRVSLAARTSYLWIVTMVTVTAIMNAPVRPLLDSGALNSLDDRSEYGKQRLWGQWGFGV-SFPT 348
            RIGHLGAITPAMTF+FTPLWGALTDKSG LKQILVLTF AS LLRVSLAARTS+LWIV+++T+TA++NAPVRPLLDS AL SLDDR+EYGKQRLWGQWGFG+ SF T
Sbjct:  514 RIGHLGAITPAMTFLFTPLWGALTDKSGMLKQILVLTFAASTLLRVSLAARTSFLWIVSVITLTAVINAPVRPLLDSSALQSLDDRAEYGKQRLWGQWGFGIGSFLT 620          
BLAST of mRNA_H-paniculata_contig20862.5428.1 vs. uniprot
Match: A0A836CD83_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD83_9STRA)

HSP 1 Score: 133 bits (335), Expect = 3.740e-34
Identity = 63/109 (57.80%), Postives = 83/109 (76.15%), Query Frame = 1
Query:   10 SINQSISRIGHLGAITPAMTFIFTPLWGALTDKSGKLKQILVLTFTASALLRVSLAARTSYLWIVTMVTVTAIMNAPVRPLLDSGALNSLDDRSEYGKQRLWGQWGFGV 336
            S+     RIGHLGAITPA+TF  +PLWGALTD +G+LK++L+ TF AS + RV    R +Y ++V+++ +TA +NAPV+ LLDS  LN LDD+ EYGKQRLWGQ GFG+
Sbjct:  230 SLGHGNRRIGHLGAITPAVTFFVSPLWGALTDSTGRLKEVLLFTFAASVVFRVLTITRETYPFLVSIIALTAAVNAPVKTLLDSSVLNLLDDKREYGKQRLWGQCGFGL 338          
BLAST of mRNA_H-paniculata_contig20862.5428.1 vs. uniprot
Match: K8YPX5_NANGC (MFS domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YPX5_NANGC)

HSP 1 Score: 127 bits (320), Expect = 2.770e-32
Identity = 60/110 (54.55%), Postives = 82/110 (74.55%), Query Frame = 1
Query:   10 SINQSISRIGHLGAITPAMTFIFTPLWGALTDKSGKLKQILVLTFTASALLRVSLAARTSYLWIVTMVTVTAIMNAPVRPLLDSGALNSLDDRSEYGKQRLWGQWGFGVS 339
            S+     +IG LGAITPA+TF+  PLWGAL D++G+ K +L+ TF AS + R+    RT++ W+  +V  TA++NAPVRPLLDS  LN L+D+ EYGKQRLWGQ+GFG++
Sbjct:  124 SLGLPDKQIGMLGAITPAVTFVVAPLWGALADQTGRHKDVLLFTFVASVVSRLLFIWRTTFGWLAILVFCTAVLNAPVRPLLDSSVLNLLEDKREYGKQRLWGQFGFGLA 233          
BLAST of mRNA_H-paniculata_contig20862.5428.1 vs. uniprot
Match: A0A1Z5KMM0_FISSO (MFS domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KMM0_FISSO)

HSP 1 Score: 94.4 bits (233), Expect = 2.750e-20
Identity = 51/109 (46.79%), Postives = 69/109 (63.30%), Query Frame = 1
Query:   10 SINQSISRIGHLGAITPAMTFIFTPLWGALTDKSGKLKQILVLTFTASALLRVSLAARTSYLWIVTMVTVTAIMNAPVRPLLDSGALNSLDDRSEYGKQRLWGQWGFGV 336
            S+      IG LGA+ PA TFI  P+WG L D+      IL LTF  S + ++ LA R    +I+ MV VTA+ NAPV+ LLDS  L+ + D+++YG+ RLWGQ GFG+
Sbjct:   10 SLGHGGQIIGLLGAVKPATTFILAPVWGLLADQLQNPFLILQLTFLVSLVGQLLLACRDDAKFIMAMVFVTALFNAPVKSLLDSMVLDHIPDKTQYGRLRLWGQMGFGL 118          
BLAST of mRNA_H-paniculata_contig20862.5428.1 vs. uniprot
Match: A0A1Z5KL90_FISSO (MFS domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KL90_FISSO)

HSP 1 Score: 94.0 bits (232), Expect = 5.580e-20
Identity = 51/109 (46.79%), Postives = 69/109 (63.30%), Query Frame = 1
Query:   10 SINQSISRIGHLGAITPAMTFIFTPLWGALTDKSGKLKQILVLTFTASALLRVSLAARTSYLWIVTMVTVTAIMNAPVRPLLDSGALNSLDDRSEYGKQRLWGQWGFGV 336
            S+      IG LGA+ PA TFI  P+WG L D+      IL LTF  S + ++ LA R    +I+ MV VTA+ NAPV+ LLDS  L+ + D+++YG+ RLWGQ GFG+
Sbjct:  805 SLGHGGQIIGLLGAVKPATTFIVAPVWGLLADQLQNPFLILQLTFLVSLVGQLLLACRDDAKFIMAMVFVTALFNAPVKSLLDSMVLDHIPDKTQYGRLRLWGQMGFGL 913          
BLAST of mRNA_H-paniculata_contig20862.5428.1 vs. uniprot
Match: A0A1E7F2F5_9STRA (MFS general substrate transporter (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F2F5_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 5.280e-19
Identity = 47/109 (43.12%), Postives = 68/109 (62.39%), Query Frame = 1
Query:   10 SINQSISRIGHLGAITPAMTFIFTPLWGALTDKSGKLKQILVLTFTASALLRVSLAARTSYLWIVTMVTVTAIMNAPVRPLLDSGALNSLDDRSEYGKQRLWGQWGFGV 336
            S+      IG LGAI P  TF+  PLWG ++D+SG   ++L  TF  S + ++ ++ R    WI+ MV +TA+ NAPV+ LLDS  + ++ +   YG+ RLWGQ GFGV
Sbjct:   30 SLGHGGQIIGMLGAIKPFTTFLVAPLWGVISDQSGSPFRVLYFTFLISLVGQLLVSWRHDPSWIMYMVFITALFNAPVKSLLDSMVMANIKNSKLYGRLRLWGQLGFGV 138          
BLAST of mRNA_H-paniculata_contig20862.5428.1 vs. uniprot
Match: A0A7S4EIB8_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EIB8_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.600e-18
Identity = 44/109 (40.37%), Postives = 69/109 (63.30%), Query Frame = 1
Query:   10 SINQSISRIGHLGAITPAMTFIFTPLWGALTDKSGKLKQILVLTFTASALLRVSLAARTSYLWIVTMVTVTAIMNAPVRPLLDSGALNSLDDRSEYGKQRLWGQWGFGV 336
            S+      IG LGAI P  TF+  PLWG ++D++G    +L   F  S + +++++ R    WI++MV +TA+ NAPV+ L+DS  ++++ +   YG+ RLWGQ GFGV
Sbjct:  170 SLGHGGQVIGMLGAIKPFTTFLVAPLWGIISDQTGSPFTVLYFAFLVSLVGQLAVSWRHDPFWIMSMVFITAVFNAPVKSLIDSMVMSNIKNGKLYGRLRLWGQLGFGV 278          
BLAST of mRNA_H-paniculata_contig20862.5428.1 vs. uniprot
Match: A0A7S2XSE9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XSE9_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 2.970e-18
Identity = 48/103 (46.60%), Postives = 69/103 (66.99%), Query Frame = 1
Query:   34 IGHLGAITPAMTFIFTPLWGALTDKSGKLKQILVLTFTASALLRVSLAARTSYLWIVTMVTVTAIMNAPVRPLLDSGALNSL--DDRSEYGKQRLWGQWGFGV 336
            IG +GA+ P  TFI  P WG L D+SG   +IL LTF  S + ++S++      ++V M   +AIMNAPV+ L+DS  +++L  +DRS+YG+ RLWGQ GFG+
Sbjct:  172 IGMIGAVKPLTTFIVAPFWGFLADRSGDKFRILKLTFLVSLIGQLSVSYSHEVNFMVGMTLFSAIMNAPVKCLIDSMVMDNLNEEDRSQYGRLRLWGQLGFGL 274          
BLAST of mRNA_H-paniculata_contig20862.5428.1 vs. uniprot
Match: A0A7S3VB90_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VB90_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 4.100e-18
Identity = 49/111 (44.14%), Postives = 70/111 (63.06%), Query Frame = 1
Query:   10 SINQSISRIGHLGAITPAMTFIFTPLWGALTDKSGKLKQILVLTFTASALLRVSLAARTSYLWIVTMVTVTAIMNAPVRPLLDSGALNSLDD--RSEYGKQRLWGQWGFGV 336
            S+  S   IG LGA+ P  TF   PLWG ++D +     IL LTF  S  L++ L  + +  ++VTMV +TA+ NAPV+ L+DS  ++ LD+  R +YGK RL+GQ GFG+
Sbjct:  181 SLGHSGQSIGLLGAVKPLTTFFVAPLWGIISDYTENPSLILQLTFIMSMGLQLLLPLKDNVNYLVTMVFLTALFNAPVKSLIDSMVMDKLDENSRGQYGKLRLYGQLGFGI 291          
BLAST of mRNA_H-paniculata_contig20862.5428.1 vs. uniprot
Match: A0A3A0C0S2_9CHLR (MFS domain-containing protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3A0C0S2_9CHLR)

HSP 1 Score: 84.3 bits (207), Expect = 8.410e-17
Identity = 43/110 (39.09%), Postives = 69/110 (62.73%), Query Frame = 1
Query:   13 INQSISRIGHLGAITPAMTFIFTPLWGALTDKSGKLKQILVLTFTASALLRVSLAARTSYLWIVTMVTVTAIMNAPVRPLLDSGALNSLDDRS-EYGKQRLWGQWGFGVS 339
            +  S  +IG L  + P +T++  PLWGAL D + + +Q++V+    +    + LA   S LW++ +V V A+ NAP+ PL+D+  +  L +RS +YGKQRLWG  G+GV+
Sbjct:   45 VGLSGGQIGLLAGLPPFLTWLAAPLWGALADATQRHRQLMVVANVGTIAAVLGLAQAQSLLWLLPLVMVYAVFNAPLMPLVDNSVMALLGERSADYGKQRLWGAVGWGVA 154          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20862.5428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNX9_ECTSI3.970e-5184.11MFS_1_like domain-containing protein n=2 Tax=Ectoc... [more]
A0A836CD83_9STRA3.740e-3457.80Major facilitator superfamily domain-containing pr... [more]
K8YPX5_NANGC2.770e-3254.55MFS domain-containing protein n=3 Tax=Monodopsidac... [more]
A0A1Z5KMM0_FISSO2.750e-2046.79MFS domain-containing protein n=1 Tax=Fistulifera ... [more]
A0A1Z5KL90_FISSO5.580e-2046.79MFS domain-containing protein n=1 Tax=Fistulifera ... [more]
A0A1E7F2F5_9STRA5.280e-1943.12MFS general substrate transporter (Fragment) n=1 T... [more]
A0A7S4EIB8_9STRA1.600e-1840.37Hypothetical protein n=2 Tax=Pseudo-nitzschia aust... [more]
A0A7S2XSE9_9STRA2.970e-1846.60Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S3VB90_9STRA4.100e-1844.14Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A3A0C0S2_9CHLR8.410e-1739.09MFS domain-containing protein n=1 Tax=Chloroflexi ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20862contigH-paniculata_contig20862:22..372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score181.8
Seed ortholog evalue1.8e-43
Seed eggNOG ortholog2880.D8LNX9
KEGG koko:K11367
Hectar predicted targeting categoryother localisation
EggNOG free text desc.MFS_1 like family
EggNOG OGsKOG3762@1,KOG3762@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021,ko03036
Exons1
Model size351
Cds size351
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929546.7589118-CDS-H-paniculata_contig20862:21..3721622929546.7589118-CDS-H-paniculata_contig20862:21..372Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20862 22..372 +
1691480908.2047951-CDS-H-paniculata_contig20862:21..3721691480908.2047951-CDS-H-paniculata_contig20862:21..372Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20862 22..372 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20862.5428.1prot_H-paniculata_contig20862.5428.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20862 22..372 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20862.5428.1

>prot_H-paniculata_contig20862.5428.1 ID=prot_H-paniculata_contig20862.5428.1|Name=mRNA_H-paniculata_contig20862.5428.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
MASSINQSISRIGHLGAITPAMTFIFTPLWGALTDKSGKLKQILVLTFTA
SALLRVSLAARTSYLWIVTMVTVTAIMNAPVRPLLDSGALNSLDDRSEYG
KQRLWGQWGFGVSFPT*
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mRNA from alignment at H-paniculata_contig20862:22..372+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20862.5428.1 ID=mRNA_H-paniculata_contig20862.5428.1|Name=mRNA_H-paniculata_contig20862.5428.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=351bp|location=Sequence derived from alignment at H-paniculata_contig20862:22..372+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCATCATCAATCAACCAATCAATCAGTCGAATAGGCCACCTGGGCGC CATTACTCCAGCGATGACGTTCATATTCACCCCTCTGTGGGGCGCGCTGA CGGACAAGTCCGGGAAGCTGAAGCAGATCCTGGTGCTCACGTTCACGGCC TCCGCCCTCTTGAGGGTGTCGCTCGCGGCGCGAACATCGTACCTGTGGAT CGTGACCATGGTTACCGTGACGGCCATCATGAACGCACCGGTGCGCCCTC TGCTGGACAGCGGGGCATTGAACTCACTGGATGATCGGTCGGAGTATGGG AAGCAGCGACTGTGGGGTCAATGGGGATTTGGGGTGAGTTTTCCCACTTA G
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Coding sequence (CDS) from alignment at H-paniculata_contig20862:22..372+

>mRNA_H-paniculata_contig20862.5428.1 ID=mRNA_H-paniculata_contig20862.5428.1|Name=mRNA_H-paniculata_contig20862.5428.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig20862:22..372+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCATCATCAATCAACCAATCAATCAGTCGAATAGGCCACCTGGGCGC
CATTACTCCAGCGATGACGTTCATATTCACCCCTCTGTGGGGCGCGCTGA
CGGACAAGTCCGGGAAGCTGAAGCAGATCCTGGTGCTCACGTTCACGGCC
TCCGCCCTCTTGAGGGTGTCGCTCGCGGCGCGAACATCGTACCTGTGGAT
CGTGACCATGGTTACCGTGACGGCCATCATGAACGCACCGGTGCGCCCTC
TGCTGGACAGCGGGGCATTGAACTCACTGGATGATCGGTCGGAGTATGGG
AAGCAGCGACTGTGGGGTCAATGGGGATTTGGGGTGAGTTTTCCCACTTA
GATGGCATCATCAATCAACCAATCAATCAGTCGAATAGGCCACCTGGGCG
CCATTACTCCAGCGATGACGTTCATATTCACCCCTCTGTGGGGCGCGCTG
ACGGACAAGTCCGGGAAGCTGAAGCAGATCCTGGTGCTCACGTTCACGGC
CTCCGCCCTCTTGAGGGTGTCGCTCGCGGCGCGAACATCGTACCTGTGGA
TCGTGACCATGGTTACCGTGACGGCCATCATGAACGCACCGGTGCGCCCT
CTGCTGGACAGCGGGGCATTGAACTCACTGGATGATCGGTCGGAGTATGG
GAAGCAGCGACTGTGGGGTCAATGGGGATTTGGGGTGAGTTTTCCCACTT
AG
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