mRNA_H-paniculata_contig20826.5415.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig20826.5415.1 vs. uniprot
Match: A0A6H5L6X6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6X6_9PHAE) HSP 1 Score: 193 bits (490), Expect = 6.140e-57 Identity = 93/143 (65.03%), Postives = 111/143 (77.62%), Query Frame = 3
Query: 117 VRQGLRVTLAFLTLYYLFLYAQATMKRKLRAYYAEYEKKFDRYFSRDRKMLGWDRTVGNMLEQSVPFLTLFWLSIFLSDRGGLSHFYVVNAGWIYVSLRAMYPVLWFSGGGGTTGTTSIIWRVTFPMYLVIIFLAGNVTKVAY 545
V G+RVTLA+L LYY F+ AQ +MKRKLRAY A + KKFDRYFSRDRKMLGWDRTVGNMLEQ PFL+LFW +I+LS GGL H Y+ GW+YV LR+ YP+LWF+GGGG+ GT+ IWRVT PMY++I+ A N V Y
Sbjct: 30 VVHGVRVTLAYLVLYYFFIVAQGSMKRKLRAYNAAHGKKFDRYFSRDRKMLGWDRTVGNMLEQMGPFLSLFWSNIWLSPYGGLPHAYIAALGWLYVLLRSFYPMLWFAGGGGSEGTSPTIWRVTMPMYVIILVFAVNAAIVIY 172
BLAST of mRNA_H-paniculata_contig20826.5415.1 vs. uniprot
Match: D7FJ57_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ57_ECTSI) HSP 1 Score: 191 bits (486), Expect = 2.320e-55 Identity = 93/143 (65.03%), Postives = 111/143 (77.62%), Query Frame = 3
Query: 117 VRQGLRVTLAFLTLYYLFLYAQATMKRKLRAYYAEYEKKFDRYFSRDRKMLGWDRTVGNMLEQSVPFLTLFWLSIFLSDRGGLSHFYVVNAGWIYVSLRAMYPVLWFSGGGGTTGTTSIIWRVTFPMYLVIIFLAGNVTKVAY 545
V G+RVTLA+L LYY F+ AQ +MKRKLRAY A + KKFDRYFSRDRKMLGWDRTVGNMLEQ PFL+LFW +I+LS GGL H Y+ GW+YV LR+ YP+LWF+GGGG+ GT+ IWRVT PMY++I+ A N V Y
Sbjct: 102 VVHGVRVTLAYLVLYYCFIIAQGSMKRKLRAYNAAHGKKFDRYFSRDRKMLGWDRTVGNMLEQMGPFLSLFWSNIWLSPYGGLPHAYIAALGWLYVLLRSFYPMLWFAGGGGSGGTSPTIWRVTMPMYVIILVFAVNSAIVIY 244
BLAST of mRNA_H-paniculata_contig20826.5415.1 vs. uniprot
Match: D7FJ72_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ72_ECTSI) HSP 1 Score: 142 bits (358), Expect = 3.650e-36 Identity = 74/139 (53.24%), Postives = 98/139 (70.50%), Query Frame = 3
Query: 114 AVRQGLRVTLAFLTLYYLFLYAQATMKRKLRAYYAEYEKKFDRYFS-RDRKMLGWDRTVGNMLEQSVPFLTLFWLSIFLSDRGGLSHFYVVNAGWIYVSLRAMYPVLWFSGGGGTTGTTSIIWRVTFPMYLVIIFLAGN 527
A+RQG+ VT A++ ++Y + QA+ K K+ A Y ++F+RY++ +D+ ML WDR VGN+LEQ++PFLTLFWL+I L+ G SH V AGWIYV RA+YPV+W SGGGG G S I VT MYLVII+L GN
Sbjct: 125 AIRQGVYVTAAYVLVFYACIIGQASAKWKVAASYRARGERFERYYNVKDKAMLAWDRIVGNLLEQAMPFLTLFWLNIGLAALGATSHTGVAIAGWIYVVFRALYPVMWLSGGGGRAGPRSKILFVTPVMYLVIIYLVGN 263
BLAST of mRNA_H-paniculata_contig20826.5415.1 vs. uniprot
Match: A0A6H5JQ30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ30_9PHAE) HSP 1 Score: 122 bits (305), Expect = 6.010e-30 Identity = 62/126 (49.21%), Postives = 86/126 (68.25%), Query Frame = 3
Query: 114 AVRQGLRVTLAFLTLYYLFLYAQATMKRKLRAYYAEYEKKFDRYFS-RDRKMLGWDRTVGNMLEQSVPFLTLFWLSIFLSDRGGLSHFYVVNAGWIYVSLRAMYPVLWFSGGGGTTGTTSIIWRVT 488
A+RQG+ +T ++ ++Y + QA+ K+ A Y ++F+RY++ +D+ ML WDR VGN+LEQ++PFLTLFWL+I L+ G SH V AGWIYV RA+YPV+W SGGGG G S I VT
Sbjct: 17 AIRQGVYITAVYVLVFYACIIGQASAMWKVAASYRARGERFERYYNVKDKAMLAWDRIVGNLLEQAMPFLTLFWLNIGLAALGATSHTGVAIAGWIYVVFRALYPVMWLSGGGGRAGPRSKILFVT 142
BLAST of mRNA_H-paniculata_contig20826.5415.1 vs. uniprot
Match: A0A835ZDZ8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDZ8_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 6.240e-18 Identity = 57/148 (38.51%), Postives = 81/148 (54.73%), Query Frame = 3
Query: 114 AVRQGLRVTLAFLTLYYLFLYAQATMKRKLRAYYAEYEKKFD-------RYFSRDRKMLGWDRTVGNMLEQSVPFLTLFWLSIFLSDRGGLSHFYVVNAGWIYVSLRAMYPVLWFSGGGGTTGTTSIIWRVTFPMYLVIIFLAGNVTK 536
A R G VTLA+L LY + L Q+ K + R + ++K Y ++D+ ++ DRTVGN LEQ++PFL FWL+ L+ G + VV GW YV RA+YPV+W +GGGG G +I T P YL+ N+ +
Sbjct: 5 AFRGGAAVTLAYLALYSILLTWQSATKNRKRIAAKKRDEKVSCSPREQHYYGNQDKDVVCADRTVGNFLEQALPFLVTFWLA--LASCGDSNCASVVYRGWAYVFFRALYPVMWKAGGGGLGGVRPLILVSTLPGYLLCYSFMYNIIR 150
BLAST of mRNA_H-paniculata_contig20826.5415.1 vs. uniprot
Match: A0A7S2TYJ8_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TYJ8_9EUKA) HSP 1 Score: 74.3 bits (181), Expect = 2.540e-12 Identity = 51/136 (37.50%), Postives = 71/136 (52.21%), Query Frame = 3
Query: 135 VTLAFLTLYYLFLYAQATMKRKLRAYYAEYEKKFDRYFSRDRKMLGWDRTVGNMLEQSVPFLTLFWL-SIFLSDRGGLSHFYVVNAGWIYVSLRAMYPVLWFSGGGGTTGT-TSIIWRVTFPMYLVIIFLAGNVTK 536
VT +L +YY+F+ KR + Y +KKFDRYF +DR+ML DR N LE VPFL + WL ++++ D + AG I RA+YP L S G T T ++ T P Y V+I+L V +
Sbjct: 13 VTFVYLGMYYVFMLNAGVTKRLIEREYKAKDKKFDRYFGQDRRMLRADRIHLNTLEHMVPFLGMMWLHAVYVDDVQKAT-----IAGIIGTCARALYPFLLGSRKEGLGHTNTKRVYPSTMPQYAVMIYLTQGVAR 143
BLAST of mRNA_H-paniculata_contig20826.5415.1 vs. uniprot
Match: A0A0G4HEK1_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HEK1_9ALVE) HSP 1 Score: 62.0 bits (149), Expect = 1.490e-7 Identity = 50/160 (31.25%), Postives = 78/160 (48.75%), Query Frame = 3
Query: 105 LSEAVRQGLRVTLAFLTLYYLFLYAQATMKRKLRAYYAEYEKKFDRYFSRDRKM--------LGWDRTVGNMLEQSVPFLTLFWLSIFLSDRGGLSHFYVVNAGWIYVSLRAMYPVLWFSGGGGTTGTTSIIWRVTFPMYLVIIFLAGNVTKVAYTTTLP 560
++E + + VTLA+ +YYLF + Q M L +A +KK + D K+ +R N EQ++PFLT FWL L DR + + GW+YV LRA+YP+ + G T+I+ T YL+I + + K+A+ +P
Sbjct: 21 MAEPFKGPITVTLAYFVVYYLFCFGQTFMHTVL---FATLKKKGESVTLSDVKLGRIEDPMVTAVNRMFLNTAEQAIPFLTSFWLYALLVDREDATLY-----GWVYVGLRAVYPLFLYLG---LKFYTAIVAFSTAGQYLIIFYF---LVKLAFLVGVP 166
BLAST of mRNA_H-paniculata_contig20826.5415.1 vs. uniprot
Match: A0A7S3Z8I1_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z8I1_9EUKA) HSP 1 Score: 55.5 bits (132), Expect = 2.010e-5 Identity = 31/87 (35.63%), Postives = 49/87 (56.32%), Query Frame = 3
Query: 279 RTVGNMLEQSVPFLTLFWL-SIFLSDRGGLSHFYVVNAGWIYVSLRAMYPVLWFSGGGGTTGTTSIIWRV--TFPMYLVIIFLAGNV 530
RTVGNM+EQ++PFL W+ +IF+S AGW+++ RA+YP+++ G + W + T P Y V+++L G V
Sbjct: 113 RTVGNMIEQALPFLLSLWMHAIFVSPDNA------AVAGWVWLGFRAIYPLVFLKG---------LPWLLISTVPGYAVVLYLVGGV 184 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20826.5415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig20826.5415.1 >prot_H-paniculata_contig20826.5415.1 ID=prot_H-paniculata_contig20826.5415.1|Name=mRNA_H-paniculata_contig20826.5415.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=169bp MGRKLVQAAAAGGLHLSEAVRQGLRVTLAFLTLYYLFLYAQATMKRKLRAback to top mRNA from alignment at H-paniculata_contig20826:955..4532+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig20826.5415.1 ID=mRNA_H-paniculata_contig20826.5415.1|Name=mRNA_H-paniculata_contig20826.5415.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3578bp|location=Sequence derived from alignment at H-paniculata_contig20826:955..4532+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig20826:955..4532+ >mRNA_H-paniculata_contig20826.5415.1 ID=mRNA_H-paniculata_contig20826.5415.1|Name=mRNA_H-paniculata_contig20826.5415.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1014bp|location=Sequence derived from alignment at H-paniculata_contig20826:955..4532+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |