mRNA_H-paniculata_contig20814.5412.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20814.5412.1
Unique NamemRNA_H-paniculata_contig20814.5412.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig20814.5412.1 vs. uniprot
Match: A0A0J7K966_LASNI (Copia protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K966_LASNI)

HSP 1 Score: 94.7 bits (234), Expect = 9.220e-23
Identity = 54/105 (51.43%), Postives = 69/105 (65.71%), Query Frame = 1
Query:    4 SSIEAEYIAAGEAGKETVYLRELLGSIGFGCRGCTTLFEDNKSAINLSNGYGAHCRTRHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLSRVQFQRLRN 318
            S+ EAEYIAA +A KE ++LR LL S+G    G TT+  DN+ AI L      H RT+HI VR+H IRE   +G + + YV + DQLADILTK LS+  F RLR+
Sbjct:    2 STTEAEYIAASDATKELIWLRHLLESMGVVTDGPTTMKVDNQGAIKLIKNPEYHKRTKHIEVRYHFIREKHEDGQIEIVYVPSSDQLADILTKALSKEPFIRLRD 106          
BLAST of mRNA_H-paniculata_contig20814.5412.1 vs. uniprot
Match: A0A4Y9ZY34_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZY34_9AGAM)

HSP 1 Score: 100 bits (250), Expect = 1.580e-22
Identity = 50/102 (49.02%), Postives = 67/102 (65.69%), Query Frame = 1
Query:    4 SSIEAEYIAAGEAGKETVYLRELLGSIGFGCRGCTTLFEDNKSAINLSNGYGAHCRTRHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLSRVQFQR 309
            SS EAEYIAA  A KE  +LR  LG IG  C+  T L  DN+SA+ ++     H RT+HI VR+H +RE +  G + L+YV TGDQ+AD+LTKGL + +  +
Sbjct: 1026 SSTEAEYIAAAHAAKEATWLRTFLGEIGRPCKTATLLLMDNQSAMAIARNPAFHARTKHIDVRYHFLREKVEAGAINLQYVPTGDQVADVLTKGLVKAKHDK 1127          
BLAST of mRNA_H-paniculata_contig20814.5412.1 vs. uniprot
Match: A0A7D9LAD0_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LAD0_PARCT)

HSP 1 Score: 93.2 bits (230), Expect = 1.770e-21
Identity = 48/104 (46.15%), Postives = 69/104 (66.35%), Query Frame = 1
Query:    4 SSIEAEYIAAGEAGKETVYLRELLGSIGFGCRGCTTLFEDNKSAINLSNGYGAHCRTRHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLSRVQFQRLR 315
            S+ E+EYIA   A +E V+LR+L+  +   C   TT++EDN+ AI +S     H RT+HI +++H IRE  ++G + LKY  T + LADILTK LS+ QF+ LR
Sbjct:   79 STSESEYIALRFATQEAVWLRQLMKDLQMDCTTATTIYEDNQGAIAMSRNPVLHKRTKHIDIKYHFIREKTQDGTIELKYCPTNEMLADILTKPLSKGQFEYLR 182          
BLAST of mRNA_H-paniculata_contig20814.5412.1 vs. uniprot
Match: A0A1X7SFX4_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SFX4_AMPQE)

HSP 1 Score: 92.4 bits (228), Expect = 3.960e-21
Identity = 46/106 (43.40%), Postives = 70/106 (66.04%), Query Frame = 1
Query:    4 SSIEAEYIAAGEAGKETVYLRELLGSIGFGCRGCTTLFEDNKSAINLSNGYGAHCRTRHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLSRVQFQRLRNL 321
            S+ EAEY+A     +E V++REL   +     G TT+FEDN+SAI+++     H R +HIG+++H IRE +    + +KY +T D +ADI TKGL+  +F+RLR+L
Sbjct:   71 STAEAEYMALASTAQEAVWMRELNADMNNKPNGPTTIFEDNQSAISMAKNPQFHGRAKHIGIKYHFIREQVSTESVQIKYCRTEDMVADIFTKGLTHEKFERLRSL 176          
BLAST of mRNA_H-paniculata_contig20814.5412.1 vs. uniprot
Match: A0A177WSV4_BATDL (Uncharacterized protein n=1 Tax=Batrachochytrium dendrobatidis (strain JEL423) TaxID=403673 RepID=A0A177WSV4_BATDL)

HSP 1 Score: 92.4 bits (228), Expect = 4.430e-21
Identity = 50/108 (46.30%), Postives = 75/108 (69.44%), Query Frame = 1
Query:    4 SSIEAEYIAAGEAGKETVYLRELLGSIGFGCRGCTTLFEDNKSAI-NLSNGYGAHCRTRHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLSRVQFQRLRNLL 324
            S++EAEY AA  A +E ++LR+LLG +GF   G TTL+ D++SAI N+      H  T+HIG++ + +R+ I +G++  +Y+ T DQ+ADILTKGL R  F++  NLL
Sbjct:   79 STMEAEYTAAESASRELLFLRDLLGELGFEQDGPTTLYCDSQSAISNMIGPSVVHEATKHIGIKINALRDRISQGLIKPEYIGTKDQVADILTKGLPRPAFEQFVNLL 186          
BLAST of mRNA_H-paniculata_contig20814.5412.1 vs. uniprot
Match: UPI001F04687D (secreted RxLR effector protein 161-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04687D)

HSP 1 Score: 91.7 bits (226), Expect = 1.190e-20
Identity = 49/108 (45.37%), Postives = 70/108 (64.81%), Query Frame = 1
Query:    1 RSSIEAEYIAAGEAGKETVYLRELLGSIGFGCRGCTTLFEDNKSAINLSNGYGAHCRTRHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLSRVQFQRLRNLL 324
            RS+ EAEY+A  +A +E ++LR LL  +G      TT+ EDN+ AI ++     H RT+HI V +H +RE I    + + Y  + D +ADI+TKGLS+ QFQ+LRNLL
Sbjct:  105 RSTTEAEYVALSQATQEVIWLRRLLSDLGSKPVSPTTVHEDNQGAIEIARNPKFHNRTKHIDVAYHFVRERILSKEVKVCYCPSKDMIADIMTKGLSKDQFQKLRNLL 212          
BLAST of mRNA_H-paniculata_contig20814.5412.1 vs. uniprot
Match: A0A409WYF4_9AGAR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Gymnopilus dilepis TaxID=231916 RepID=A0A409WYF4_9AGAR)

HSP 1 Score: 95.5 bits (236), Expect = 1.220e-20
Identity = 55/107 (51.40%), Postives = 66/107 (61.68%), Query Frame = 1
Query:    4 SSIEAEYIAAGEAGKETVYLRELLGSIGFGCRGCTTLFEDNKSAINLSNGYGAHCRTRHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLSRVQFQRLRNLL 324
            SS EAEY AA EA KE V+LR LLG I       T L  DN +AI LS     H R +HI + +H +RE + E  ++L YV T + LADI TKGL RV+F RLR LL
Sbjct:  994 SSCEAEYTAAFEASKEAVWLRTLLGEINLTQAEPTRLLCDNNAAITLSEDPVLHSRAKHIDIHYHFLRERVAEKNISLSYVNTTNNLADIFTKGLDRVKFTRLRQLL 1100          
BLAST of mRNA_H-paniculata_contig20814.5412.1 vs. uniprot
Match: A0A7H4LDI7_WHEAT (Genome assembly, chromosome: II n=2 Tax=Triticinae TaxID=1648030 RepID=A0A7H4LDI7_WHEAT)

HSP 1 Score: 94.7 bits (234), Expect = 2.300e-20
Identity = 50/104 (48.08%), Postives = 68/104 (65.38%), Query Frame = 1
Query:    4 SSIEAEYIAAGEAGKETVYLRELLGSIGFGCRGCTTLFEDNKSAINLSNGYGAHCRTRHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLSRVQFQRLR 315
            SS EAEY+AA  A  + ++L  L+  +     G TT+F DNKSAI L      H R++HI VR+H IR+ + EG + +K++ TGDQLADI TK L R +FQ+LR
Sbjct: 1184 SSCEAEYVAATTAACQAIWLSRLMRDLLKEEAGATTIFIDNKSAIQLCKNPVCHDRSKHIDVRFHFIRKCVEEGKIRVKHIATGDQLADIFTKSLGRTRFQQLR 1287          
BLAST of mRNA_H-paniculata_contig20814.5412.1 vs. uniprot
Match: A0A6S7HNY1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HNY1_PARCT)

HSP 1 Score: 94.4 bits (233), Expect = 3.140e-20
Identity = 50/108 (46.30%), Postives = 70/108 (64.81%), Query Frame = 1
Query:    1 RSSIEAEYIAAGEAGKETVYLRELLGSIGFGCRGCTTLFEDNKSAINLSNGYGAHCRTRHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLSRVQFQRLRNLL 324
            RS+ EAEYIA   A +E V+LR LL  IG      +T+FEDN+ AI LS     H RT+HI V +H IRE +   I+ +KY +T + LAD++TK L +V F+R R+++
Sbjct: 1221 RSTTEAEYIALSTACQEAVWLRRLLSDIGLKQDVPSTIFEDNQGAIELSKNPKFHNRTKHIDVSFHFIREQVNRNIVCVKYGRTENMLADVMTKALPKVSFERFRDMM 1328          
BLAST of mRNA_H-paniculata_contig20814.5412.1 vs. uniprot
Match: A0A5N5G5U8_9ROSA (Uncharacterized protein n=4 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5G5U8_9ROSA)

HSP 1 Score: 88.6 bits (218), Expect = 3.400e-20
Identity = 42/107 (39.25%), Postives = 72/107 (67.29%), Query Frame = 1
Query:    4 SSIEAEYIAAGEAGKETVYLRELLGSIGFGCRGCTTLFEDNKSAINLSNGYGAHCRTRHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLSRVQFQRLRNLL 324
            S+ EAE++AA     + ++LR +LG +G+  +  T ++ DN SAI LS     H R++HI VR+H +R+  +EG++ L Y ++ DQ+AD++TK L +  F++LR++L
Sbjct:   19 STTEAEFVAAASCSCQAIWLRRMLGVLGYQQQDSTLIYCDNVSAIKLSRNPVMHGRSKHIDVRYHFLRDLCKEGVIELHYCKSEDQVADLMTKPLKQPAFEKLRSML 125          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20814.5412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0J7K966_LASNI9.220e-2351.43Copia protein n=1 Tax=Lasius niger TaxID=67767 Rep... [more]
A0A4Y9ZY34_9AGAM1.580e-2249.02Integrase catalytic domain-containing protein n=1 ... [more]
A0A7D9LAD0_PARCT1.770e-2146.15Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
A0A1X7SFX4_AMPQE3.960e-2143.40Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
A0A177WSV4_BATDL4.430e-2146.30Uncharacterized protein n=1 Tax=Batrachochytrium d... [more]
UPI001F04687D1.190e-2045.37secreted RxLR effector protein 161-like n=1 Tax=Xe... [more]
A0A409WYF4_9AGAR1.220e-2051.40Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7H4LDI7_WHEAT2.300e-2048.08Genome assembly, chromosome: II n=2 Tax=Triticinae... [more]
A0A6S7HNY1_PARCT3.140e-2046.30Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A5N5G5U8_9ROSA3.400e-2039.25Uncharacterized protein n=4 Tax=Pyrus ussuriensis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20814contigH-paniculata_contig20814:4157..4486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score97.1
Seed ortholog evalue5.6e-18
Seed eggNOG ortholog7029.ACYPI24114-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,3SQRW@50557,41WYJ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size330
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929545.1270049-CDS-H-paniculata_contig20814:4156..44861622929545.1270049-CDS-H-paniculata_contig20814:4156..4486Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20814 4157..4486 +
1691480907.4454398-CDS-H-paniculata_contig20814:4156..44861691480907.4454398-CDS-H-paniculata_contig20814:4156..4486Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20814 4157..4486 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20814.5412.1prot_H-paniculata_contig20814.5412.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20814 4157..4486 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20814.5412.1

>prot_H-paniculata_contig20814.5412.1 ID=prot_H-paniculata_contig20814.5412.1|Name=mRNA_H-paniculata_contig20814.5412.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
RSSIEAEYIAAGEAGKETVYLRELLGSIGFGCRGCTTLFEDNKSAINLSN
GYGAHCRTRHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLSRVQ
FQRLRNLLM*
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mRNA from alignment at H-paniculata_contig20814:4157..4486+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20814.5412.1 ID=mRNA_H-paniculata_contig20814.5412.1|Name=mRNA_H-paniculata_contig20814.5412.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=330bp|location=Sequence derived from alignment at H-paniculata_contig20814:4157..4486+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGTCCAGTATAGAGGCAGAGTATATTGCTGCAGGAGAAGCGGGAAAGGA GACGGTATATCTTAGGGAGTTACTAGGATCGATAGGTTTCGGATGCAGGG GGTGCACGACATTGTTTGAGGACAATAAATCAGCTATTAATCTCAGTAAT GGATATGGCGCACACTGCAGGACAAGGCACATCGGAGTGCGCTGGCACGG AATTCGAGAGTGGATTCGGGAAGGAATATTGGCATTGAAATACGTGCAGA CCGGCGATCAACTTGCCGACATTTTAACGAAAGGACTAAGCAGAGTACAG TTTCAGAGACTGAGAAATTTACTCATGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig20814:4157..4486+

>mRNA_H-paniculata_contig20814.5412.1 ID=mRNA_H-paniculata_contig20814.5412.1|Name=mRNA_H-paniculata_contig20814.5412.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig20814:4157..4486+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGTCCAGTATAGAGGCAGAGTATATTGCTGCAGGAGAAGCGGGAAAGGA
GACGGTATATCTTAGGGAGTTACTAGGATCGATAGGTTTCGGATGCAGGG
GGTGCACGACATTGTTTGAGGACAATAAATCAGCTATTAATCTCAGTAAT
GGATATGGCGCACACTGCAGGACAAGGCACATCGGAGTGCGCTGGCACGG
AATTCGAGAGTGGATTCGGGAAGGAATATTGGCATTGAAATACGTGCAGA
CCGGCGATCAACTTGCCGACATTTTAACGAAAGGACTAAGCAGAGTACAG
TTTCAGAGACTGAGAAATTTACTCATGTGACGGTCCAGTATAGAGGCAGA
GTATATTGCTGCAGGAGAAGCGGGAAAGGAGACGGTATATCTTAGGGAGT
TACTAGGATCGATAGGTTTCGGATGCAGGGGGTGCACGACATTGTTTGAG
GACAATAAATCAGCTATTAATCTCAGTAATGGATATGGCGCACACTGCAG
GACAAGGCACATCGGAGTGCGCTGGCACGGAATTCGAGAGTGGATTCGGG
AAGGAATATTGGCATTGAAATACGTGCAGACCGGCGATCAACTTGCCGAC
ATTTTAACGAAAGGACTAAGCAGAGTACAGTTTCAGAGACTGAGAAATTT
ACTCATGTGA
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