mRNA_H-paniculata_contig20814.5412.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig20814.5412.1 vs. uniprot
Match: A0A0J7K966_LASNI (Copia protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K966_LASNI) HSP 1 Score: 94.7 bits (234), Expect = 9.220e-23 Identity = 54/105 (51.43%), Postives = 69/105 (65.71%), Query Frame = 1
Query: 4 SSIEAEYIAAGEAGKETVYLRELLGSIGFGCRGCTTLFEDNKSAINLSNGYGAHCRTRHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLSRVQFQRLRN 318
S+ EAEYIAA +A KE ++LR LL S+G G TT+ DN+ AI L H RT+HI VR+H IRE +G + + YV + DQLADILTK LS+ F RLR+
Sbjct: 2 STTEAEYIAASDATKELIWLRHLLESMGVVTDGPTTMKVDNQGAIKLIKNPEYHKRTKHIEVRYHFIREKHEDGQIEIVYVPSSDQLADILTKALSKEPFIRLRD 106
BLAST of mRNA_H-paniculata_contig20814.5412.1 vs. uniprot
Match: A0A4Y9ZY34_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZY34_9AGAM) HSP 1 Score: 100 bits (250), Expect = 1.580e-22 Identity = 50/102 (49.02%), Postives = 67/102 (65.69%), Query Frame = 1
Query: 4 SSIEAEYIAAGEAGKETVYLRELLGSIGFGCRGCTTLFEDNKSAINLSNGYGAHCRTRHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLSRVQFQR 309
SS EAEYIAA A KE +LR LG IG C+ T L DN+SA+ ++ H RT+HI VR+H +RE + G + L+YV TGDQ+AD+LTKGL + + +
Sbjct: 1026 SSTEAEYIAAAHAAKEATWLRTFLGEIGRPCKTATLLLMDNQSAMAIARNPAFHARTKHIDVRYHFLREKVEAGAINLQYVPTGDQVADVLTKGLVKAKHDK 1127
BLAST of mRNA_H-paniculata_contig20814.5412.1 vs. uniprot
Match: A0A7D9LAD0_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LAD0_PARCT) HSP 1 Score: 93.2 bits (230), Expect = 1.770e-21 Identity = 48/104 (46.15%), Postives = 69/104 (66.35%), Query Frame = 1
Query: 4 SSIEAEYIAAGEAGKETVYLRELLGSIGFGCRGCTTLFEDNKSAINLSNGYGAHCRTRHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLSRVQFQRLR 315
S+ E+EYIA A +E V+LR+L+ + C TT++EDN+ AI +S H RT+HI +++H IRE ++G + LKY T + LADILTK LS+ QF+ LR
Sbjct: 79 STSESEYIALRFATQEAVWLRQLMKDLQMDCTTATTIYEDNQGAIAMSRNPVLHKRTKHIDIKYHFIREKTQDGTIELKYCPTNEMLADILTKPLSKGQFEYLR 182
BLAST of mRNA_H-paniculata_contig20814.5412.1 vs. uniprot
Match: A0A1X7SFX4_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SFX4_AMPQE) HSP 1 Score: 92.4 bits (228), Expect = 3.960e-21 Identity = 46/106 (43.40%), Postives = 70/106 (66.04%), Query Frame = 1
Query: 4 SSIEAEYIAAGEAGKETVYLRELLGSIGFGCRGCTTLFEDNKSAINLSNGYGAHCRTRHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLSRVQFQRLRNL 321
S+ EAEY+A +E V++REL + G TT+FEDN+SAI+++ H R +HIG+++H IRE + + +KY +T D +ADI TKGL+ +F+RLR+L
Sbjct: 71 STAEAEYMALASTAQEAVWMRELNADMNNKPNGPTTIFEDNQSAISMAKNPQFHGRAKHIGIKYHFIREQVSTESVQIKYCRTEDMVADIFTKGLTHEKFERLRSL 176
BLAST of mRNA_H-paniculata_contig20814.5412.1 vs. uniprot
Match: A0A177WSV4_BATDL (Uncharacterized protein n=1 Tax=Batrachochytrium dendrobatidis (strain JEL423) TaxID=403673 RepID=A0A177WSV4_BATDL) HSP 1 Score: 92.4 bits (228), Expect = 4.430e-21 Identity = 50/108 (46.30%), Postives = 75/108 (69.44%), Query Frame = 1
Query: 4 SSIEAEYIAAGEAGKETVYLRELLGSIGFGCRGCTTLFEDNKSAI-NLSNGYGAHCRTRHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLSRVQFQRLRNLL 324
S++EAEY AA A +E ++LR+LLG +GF G TTL+ D++SAI N+ H T+HIG++ + +R+ I +G++ +Y+ T DQ+ADILTKGL R F++ NLL
Sbjct: 79 STMEAEYTAAESASRELLFLRDLLGELGFEQDGPTTLYCDSQSAISNMIGPSVVHEATKHIGIKINALRDRISQGLIKPEYIGTKDQVADILTKGLPRPAFEQFVNLL 186
BLAST of mRNA_H-paniculata_contig20814.5412.1 vs. uniprot
Match: UPI001F04687D (secreted RxLR effector protein 161-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04687D) HSP 1 Score: 91.7 bits (226), Expect = 1.190e-20 Identity = 49/108 (45.37%), Postives = 70/108 (64.81%), Query Frame = 1
Query: 1 RSSIEAEYIAAGEAGKETVYLRELLGSIGFGCRGCTTLFEDNKSAINLSNGYGAHCRTRHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLSRVQFQRLRNLL 324
RS+ EAEY+A +A +E ++LR LL +G TT+ EDN+ AI ++ H RT+HI V +H +RE I + + Y + D +ADI+TKGLS+ QFQ+LRNLL
Sbjct: 105 RSTTEAEYVALSQATQEVIWLRRLLSDLGSKPVSPTTVHEDNQGAIEIARNPKFHNRTKHIDVAYHFVRERILSKEVKVCYCPSKDMIADIMTKGLSKDQFQKLRNLL 212
BLAST of mRNA_H-paniculata_contig20814.5412.1 vs. uniprot
Match: A0A409WYF4_9AGAR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Gymnopilus dilepis TaxID=231916 RepID=A0A409WYF4_9AGAR) HSP 1 Score: 95.5 bits (236), Expect = 1.220e-20 Identity = 55/107 (51.40%), Postives = 66/107 (61.68%), Query Frame = 1
Query: 4 SSIEAEYIAAGEAGKETVYLRELLGSIGFGCRGCTTLFEDNKSAINLSNGYGAHCRTRHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLSRVQFQRLRNLL 324
SS EAEY AA EA KE V+LR LLG I T L DN +AI LS H R +HI + +H +RE + E ++L YV T + LADI TKGL RV+F RLR LL
Sbjct: 994 SSCEAEYTAAFEASKEAVWLRTLLGEINLTQAEPTRLLCDNNAAITLSEDPVLHSRAKHIDIHYHFLRERVAEKNISLSYVNTTNNLADIFTKGLDRVKFTRLRQLL 1100
BLAST of mRNA_H-paniculata_contig20814.5412.1 vs. uniprot
Match: A0A7H4LDI7_WHEAT (Genome assembly, chromosome: II n=2 Tax=Triticinae TaxID=1648030 RepID=A0A7H4LDI7_WHEAT) HSP 1 Score: 94.7 bits (234), Expect = 2.300e-20 Identity = 50/104 (48.08%), Postives = 68/104 (65.38%), Query Frame = 1
Query: 4 SSIEAEYIAAGEAGKETVYLRELLGSIGFGCRGCTTLFEDNKSAINLSNGYGAHCRTRHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLSRVQFQRLR 315
SS EAEY+AA A + ++L L+ + G TT+F DNKSAI L H R++HI VR+H IR+ + EG + +K++ TGDQLADI TK L R +FQ+LR
Sbjct: 1184 SSCEAEYVAATTAACQAIWLSRLMRDLLKEEAGATTIFIDNKSAIQLCKNPVCHDRSKHIDVRFHFIRKCVEEGKIRVKHIATGDQLADIFTKSLGRTRFQQLR 1287
BLAST of mRNA_H-paniculata_contig20814.5412.1 vs. uniprot
Match: A0A6S7HNY1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HNY1_PARCT) HSP 1 Score: 94.4 bits (233), Expect = 3.140e-20 Identity = 50/108 (46.30%), Postives = 70/108 (64.81%), Query Frame = 1
Query: 1 RSSIEAEYIAAGEAGKETVYLRELLGSIGFGCRGCTTLFEDNKSAINLSNGYGAHCRTRHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLSRVQFQRLRNLL 324
RS+ EAEYIA A +E V+LR LL IG +T+FEDN+ AI LS H RT+HI V +H IRE + I+ +KY +T + LAD++TK L +V F+R R+++
Sbjct: 1221 RSTTEAEYIALSTACQEAVWLRRLLSDIGLKQDVPSTIFEDNQGAIELSKNPKFHNRTKHIDVSFHFIREQVNRNIVCVKYGRTENMLADVMTKALPKVSFERFRDMM 1328
BLAST of mRNA_H-paniculata_contig20814.5412.1 vs. uniprot
Match: A0A5N5G5U8_9ROSA (Uncharacterized protein n=4 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5G5U8_9ROSA) HSP 1 Score: 88.6 bits (218), Expect = 3.400e-20 Identity = 42/107 (39.25%), Postives = 72/107 (67.29%), Query Frame = 1
Query: 4 SSIEAEYIAAGEAGKETVYLRELLGSIGFGCRGCTTLFEDNKSAINLSNGYGAHCRTRHIGVRWHGIREWIREGILALKYVQTGDQLADILTKGLSRVQFQRLRNLL 324
S+ EAE++AA + ++LR +LG +G+ + T ++ DN SAI LS H R++HI VR+H +R+ +EG++ L Y ++ DQ+AD++TK L + F++LR++L
Sbjct: 19 STTEAEFVAAASCSCQAIWLRRMLGVLGYQQQDSTLIYCDNVSAIKLSRNPVMHGRSKHIDVRYHFLRDLCKEGVIELHYCKSEDQVADLMTKPLKQPAFEKLRSML 125 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20814.5412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig20814.5412.1 >prot_H-paniculata_contig20814.5412.1 ID=prot_H-paniculata_contig20814.5412.1|Name=mRNA_H-paniculata_contig20814.5412.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp RSSIEAEYIAAGEAGKETVYLRELLGSIGFGCRGCTTLFEDNKSAINLSNback to top mRNA from alignment at H-paniculata_contig20814:4157..4486+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig20814.5412.1 ID=mRNA_H-paniculata_contig20814.5412.1|Name=mRNA_H-paniculata_contig20814.5412.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=330bp|location=Sequence derived from alignment at H-paniculata_contig20814:4157..4486+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig20814:4157..4486+ >mRNA_H-paniculata_contig20814.5412.1 ID=mRNA_H-paniculata_contig20814.5412.1|Name=mRNA_H-paniculata_contig20814.5412.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig20814:4157..4486+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |