mRNA_H-paniculata_contig20814.5411.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig20814.5411.1 vs. uniprot
Match: A0A2K3NI74_TRIPR (Uncharacterized protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3NI74_TRIPR) HSP 1 Score: 111 bits (278), Expect = 3.950e-24 Identity = 82/289 (28.37%), Postives = 138/289 (47.75%), Query Frame = 1
Query: 1 IQCWNCGKHGHRQWECREKPKGND-SAANDMAQSSKLHV-----------HWIIDSGCTGHHLTPQRDLFQNFRQVVHSPIATAGKGELDVEGQGDVEGLIWTAEGAMHI-IFCNVFYVPEASDSILSVERVKYSSRMILGDEVEI---DAAKRAIGKQVKVNRLFSNDFTTLKNKEK----KQQVDTKLLHERLGHVRDVPTIARQQGI------RLSGKLGDCSACGKGKASKQPVKTYREERTTESLELVHTDIAGPVDK-SFGGCRFAIIFVDDYSRMRKVHTLR 786
++C CG+ GH + C+ + + + A D +Q +L W+IDSGCT H +T R+LF+ + V S + ++V+G+G V EG + + +V +VPE + ++LSV ++ + ++ D+ R + K + F+ DF NKE+ K+ T L H+RLGH I ++ +L +C AC GK + P + R T+ L+LVHTD+ GP+ S G ++ I F+DDYSRM ++ ++
Sbjct: 280 VRCHKCGRLGHVEKICKSQQQQQEVKVAEDESQDEQLFTASCFASNYSTESWLIDSGCTNH-MTYDRELFRELDENVLSKVKIGNGAYIEVKGKGTV-----AIEGHTGLKLISDVLFVPEINQNLLSVPQLLEKGYKVFFEDKNCMIKDSEGREVFKIQMKGKSFALDFM---NKEQAAMHKEVSSTMLWHKRLGHFHHAALIFMKKNNLVNDLPKLEVMPPECIACQYGKQKRLPFQQNNTWRATQKLQLVHTDVGGPMKTPSLNGSKYYIAFIDDYSRMCWIYFMK 559
BLAST of mRNA_H-paniculata_contig20814.5411.1 vs. uniprot
Match: A0A151QUV8_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151QUV8_CAJCA) HSP 1 Score: 111 bits (277), Expect = 5.710e-24 Identity = 79/287 (27.53%), Postives = 140/287 (48.78%), Query Frame = 1
Query: 1 IQCWNCGKHGHRQWECRE-KPKGNDSAANDMAQSSKLHV-----------HWIIDSGCTGHHLTPQRDLFQNFRQVVHSPIATAGKGELDVEGQGDVEGLIWTAEGAMHI-IFCNVFYVPEASDSILSVERVKYSSRMILGDEVEI---DAAKRAIGKQVKVNRLFSNDFTTLKNKEKKQQVDTKLL-HERLGHVRDVPTIARQQGIRLSGKLGD-------CSACGKGKASKQPVKTYREERTTESLELVHTDIAGPVDK-SFGGCRFAIIFVDDYSRMRKVHTLR 786
++C CG+ GH + C+ + +G A D +Q +L W+IDSGCT H ++ R+LF+ + S + + V+G+G V EG + + +V YVPE + ++LSV ++ +L ++ D+A + + K + F+ DF + ++ ++V +L H+RLGH I ++ + G L D C AC GK ++ P + R ++L+L+HTD+ GP+ S G R+ IIF+DD +RM ++ ++
Sbjct: 233 VKCHKCGQLGHMEKICKSHQQQGEVKVAEDQSQEEQLFAVTCFAANSSTESWLIDSGCTNH-MSYDRELFKELDKTALSKVRVGNGAYIAVKGKGTV-----AIEGQTGLKLISDVLYVPEINQNLLSVPQLLEKGYKVLFEDKNCIIKDSAGKEVFKVRMKGKSFALDFMSEEHAAVHKEVSNTILWHKRLGHFHHSALIFMKKNNMVRG-LSDIEEESPTCIACQYGKQTRLPFPQNKTWRAIQNLQLIHTDVGGPMSTPSLNGSRYYIIFIDDMTRMCWIYFMK 512
BLAST of mRNA_H-paniculata_contig20814.5411.1 vs. uniprot
Match: A0A6S7JQN7_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JQN7_PARCT) HSP 1 Score: 109 bits (273), Expect = 1.710e-23 Identity = 84/302 (27.81%), Postives = 139/302 (46.03%), Query Frame = 1
Query: 7 CWNCGKHGHRQWECRE-------------------KPKGNDSAANDMA-------QSSKLH-VHWIIDSGCTGHHLTPQRDLFQNFRQVVHSPIATAGKGEL-DVEGQGDVE-GLIWTAEGAMHIIFCNVFYVPEASDSILSVERVKYSSRMIL--GDEVEI-DAAKRAIGKQVKVNRLFSNDFTTLKNKEKK--QQVDTKLLHERLGHVRDVPTIARQQGIRLSG-------KLGDCSACGKGKASKQPVKTYREERTTESLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVHTLR 786
C+ CG GH + C + K + +DS + A ++KL HW+IDSG + H +T ++ + N++Q G G + G G+V ++++ + + CNV YVP+ + ++ SV ++ GD+ I DA+ R G N+L+ D + N Q + L H+RLGHV + + + + G KL C AC GK ++P E R++ L+LVH+D+ GP+ +SFGG R+ + F DDYSR V+ ++
Sbjct: 204 CFKCGTVGHIRRNCPQEKARYTKPVYKSRHGAKVGKTQNSDSESESSACVFTVSEGNAKLSDCHWLIDSGASSH-MTKEKSVLVNYQQFGEPESVALGDGRVVQALGSGNVHMDMLFSGSKSKRGVLCNVLYVPKLTSNLFSVRAAVAKGNVVKFRGDKCWISDASGRLRGMGSLANKLYKLDCEDVSNGHATLASQESSDLWHQRLGHVHEQRLNSCIKNNIVKGICCENVDKLSFCEACLAGKMHRKPFLAREEIRSSHKLQLVHSDVCGPMQTESFGGARYFVTFTDDYSRCCAVYFMK 504
BLAST of mRNA_H-paniculata_contig20814.5411.1 vs. uniprot
Match: Q9ZQE9_ARATH (Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9ZQE9_ARATH) HSP 1 Score: 107 bits (267), Expect = 1.220e-22 Identity = 82/289 (28.37%), Postives = 133/289 (46.02%), Query Frame = 1
Query: 1 IQCWNCGKHGHRQWECREKPKGND----------------SAANDMAQSSKLHVHWIIDSGCTGHHLTPQRDLFQNFRQVVHSPIATAGKGELDVEGQGDVEGLIWTAEGAMHIIFCNVFYVPEASDSILSVERVKYSSRMILGDEVEI---DAAKRAIGKQVKVNRLFSNDFTTLKNKEKKQQVDTK-LLHERLGHVRDVPTIARQQGIRLSG------KLGDCSACGKGKASKQPVKTYREERTTESLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVHTLR 786
I+C+ CGK GH ECR K K SA+ + + + + V W++DSGCT H +T + F N + + PI + G+GD+ + T G I NVF VP ++LSV ++ S + + DA + I ++ F ++++ + V T+ H+RLGHV + Q ++G C AC GK S++ + +T E LE+VHTD+ GP+ +S G R+ ++F+DDY+ M V+ L+
Sbjct: 272 IKCYKCGKIGHYANECRSKNKERAHVTLEEEDVNEDHMLFSASEEESTTLREDV-WLVDSGCTNH-MTKEERYFSNINKSIKVPIRVRNGDIVMTAGKGDIT--VMTRHGKR--IIKNVFLVPGLEKNLLSVPQIISSGYWVRFQDKRCIIQDANGKEIMNIEMTDKSFKIKLSSVEEEAMTANVQTEETWHKRLGHVSNKRLQQMQDKELVNGLPRFKVTKETCKACNLGKQSRKSFPKESQTKTREKLEIVHTDVCGPMQHQSIDGSRYYVLFLDDYTHMCWVYFLK 554
BLAST of mRNA_H-paniculata_contig20814.5411.1 vs. uniprot
Match: A0A0J7KG03_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KG03_LASNI) HSP 1 Score: 107 bits (266), Expect = 1.510e-22 Identity = 76/289 (26.30%), Postives = 143/289 (49.48%), Query Frame = 1
Query: 4 QCWNCGKHGHRQWECREKPKGN-----------------DSAANDMAQSSKL-HVHWIIDSGCTGHHLTPQRDLFQNFRQVVHSPIATAGKGELDVEGQGDVEGLIWTAEGAMHIIFCNVFYVPEASDSILSVERVKYSSRMILGDE----VEIDAAKRAIGKQVKVNRLFSNDFTTLKNKEKKQQVDTKLLHERLGHVRDVPTIARQQG----IRL-SGKLGDCSACGKGKASKQPVKTYREERTTESLELVHTDIAGPVDK-SFGGCRFAIIFVDDYSRMRKVHTLR 786
+C++C K+GH CR K K N + A + + S+K+ + W +DS C+ H+T ++ QN + + I A K + ++ G+V+ + T G ++ +V Y PE++ ++LSV ++ ++ + D R I + N ++ D K + + +L H+RLGH+ + IA + I++ + ++ C +C KGK + P ++ + R+ E L++VH+D+ GP++K S GG R+ + F+DDYS+ V L+
Sbjct: 66 RCFSCNKYGHYAIVCRSKSKQNSKGNLQKAEEKQNSPKTEKAFDALLSSTKISNRQWYVDS-CSSAHITNEKVELQNNKDCRNMSITVANKNMISIKAIGNVKIPVTTESGVDEVVVKDVKYAPESAANLLSVSKIVNKGFFVIFTPRVSYISDDKGTR-IATMSQENGIYRLDTPREKVYYAAETPNAELWHKRLGHLNNKNVIALSKNPATEIKIRNAEIPTCVSCIKGKQHRYPF-SHSKTRSREILQMVHSDVCGPMEKTSIGGSRYFLTFIDDYSKKTFVFFLK 351
BLAST of mRNA_H-paniculata_contig20814.5411.1 vs. uniprot
Match: A0A5A7UI36_CUCME (Integrase n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7UI36_CUCME) HSP 1 Score: 107 bits (266), Expect = 1.540e-22 Identity = 83/293 (28.33%), Postives = 140/293 (47.78%), Query Frame = 1
Query: 1 IQCWNCGKHGHRQWECREKPKGNDSAANDMAQSSK-----------------LHVHWIIDSGCTGHHLTPQRDLFQNFRQVVHSPIATAGKGELDVEGQGDVEGLIWTAEGAMHIIFCNVFYVPEASDSILSVERVKYSSRMILGDEVEIDAAKRAIG---KQVKV--NRLFSNDFT--TLKNKEKKQQVDTKLLHERLGHV--RDVPTIARQQGIR----LSGKLGDCSACGKGKASKQPVKTYREERTTESLELVHTDIAGPVDKSF-GGCRFAIIFVDDYSRMRKVHTLR 786
IQC+NCGK+GH Q +C G +A +M + K + W +DSGC+ H +T R +F + S + T L V+GQGD+ L+ T +G + NVFYVP ++LS+ ++ + E +I A K +G +VK+ N++F +FT + + + L H R GH+ + + + + +R ++ + C C K + T + R ++ LEL+HTD+ GP+ + GG R+ I F+DD+SR ++ L+
Sbjct: 283 IQCFNCGKYGHFQADCWALKNGVGNATMNMHKEQKKNDEGILFLACSVQDNVVEPTWYLDSGCSNH-MTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDI--LVKTKKGTKRVT--NVFYVPGLKHNLLSIGQLLQRGLKV-SFEGDICAIKDQVGVLIAKVKMTANKMFPLNFTYGQISCFSSILKDPSWLWHFRYGHLNFKSLSYLCKNHMVRGIQNINHETNICEVCILAKHHRDSFPTGKAWRASKPLELIHTDLCGPMRTTTNGGNRYFITFIDDFSRKLWIYFLK 569
BLAST of mRNA_H-paniculata_contig20814.5411.1 vs. uniprot
Match: A0A5N5G876_9ROSA (Uncharacterized protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5G876_9ROSA) HSP 1 Score: 106 bits (265), Expect = 2.250e-22 Identity = 82/294 (27.89%), Postives = 140/294 (47.62%), Query Frame = 1
Query: 1 IQCWNCGKHGHRQWECREKP---KGNDSAAND------MAQSSKLHVHWIIDSGCTGHHLTPQRDLFQNFRQVVHSPIATAGKGELDVEGQGDVEGLIWTAEGAMHIIFCNVFYVPEASDSILSVERVKYSSRMILGDE--VEIDAAKRAIGKQVKV--NRLFSNDFTTLKNKEKK----QQVD-TKLLHERLGH--------------VRDVPTIARQQGIRLSGKLGDCSACGKGKASKQPVKTYREERTTESLELVHTDIAGPVDK-SFGGCRFAIIFVDDYSRMRKVHTL 783
++C++C + GH QWEC +KP K N + + + + ++ W +DSGC+ H + + DLF F + L V+G+G V I +G +H+I VFYVP+ +++LS+ +++ +L + +I ++ + + K+ NR+F+ +E+K Q D +L H R GH V+ +P IA Q + C C G+ + P + R +E+L+LVH DI GP++ S R+ I F+DD+SR V+ L
Sbjct: 371 LECYHCHELGHFQWECPKKPREEKANYAETKEEMLLMALVEFKRMEHTWFLDSGCSNH-MCGRLDLFSEFDSSFKESVKLGNDSSLTVQGKGSVRMEI---DGRIHVI-TGVFYVPDLKNNLLSIGQLQEKGLTVLIQQGRCKIFHFEKGLIMETKMSTNRMFA--VVARSPEEQKCLSSQTTDQAQLWHHRYGHLSWNGLKVLQQKQMVKGLPQIAASQKV--------CEDCLVGRQQRDPFPKESQWRASETLQLVHADICGPINPTSNSNKRYLITFIDDFSRKTWVYFL 649
BLAST of mRNA_H-paniculata_contig20814.5411.1 vs. uniprot
Match: A0A7D9F0C3_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9F0C3_PARCT) HSP 1 Score: 105 bits (262), Expect = 4.620e-22 Identity = 82/302 (27.15%), Postives = 139/302 (46.03%), Query Frame = 1
Query: 7 CWNCGKHGHRQWECRE-------------------KPKGNDSAANDMA-------QSSKLH-VHWIIDSGCTGHHLTPQRDLFQNFRQVVHSPIATAGKGEL-DVEGQGDVE-GLIWTAEGAMHIIFCNVFYVPEASDSILSVERVKYSSRMIL--GDEVEI-DAAKRAIGKQVKVNRLFSNDFTTLKNKEKK--QQVDTKLLHERLGHVRDVPTIARQQGIRLSG-------KLGDCSACGKGKASKQPVKTYREERTTESLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVHTLR 786
C+ CG GH + C + K + +DS + A ++KL HW+IDSG + H +T ++ + N++Q G G + G G+V ++++ + + CNV YVP+ + ++ SV+ ++ GD+ I DA+ R G N+L+ D + + Q + L H+RLGHV + + + + G KL C AC GK ++P E R++ L+LVH+D+ GP+ +SFGG + + F DDYSR V+ ++
Sbjct: 40 CFKCGTVGHIRRNCPQEKARYTKPVYKSRHGAKVGKTQNSDSESESGACVFTVSEGNAKLSDCHWLIDSGASSH-MTKEKSVLVNYQQFGEPESVALGDGRVVQALGSGNVHMDMLFSGSKSKRGVLCNVLYVPKLTSNLFSVQAAVAKGNVVKFRGDKCWISDASGRLRGMGSLANKLYKLDCEDVSDGHATLASQESSDLWHQRLGHVHEQRLNSCIKNNIVKGICCENVDKLSFCEACLAGKMHRKPFLAREEIRSSHKLQLVHSDVCGPMQTESFGGASYFVTFTDDYSRCCAVYFMK 340
BLAST of mRNA_H-paniculata_contig20814.5411.1 vs. uniprot
Match: A0A5N6M7D6_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6M7D6_9ASTR) HSP 1 Score: 105 bits (261), Expect = 6.690e-22 Identity = 77/290 (26.55%), Postives = 145/290 (50.00%), Query Frame = 1
Query: 1 IQCWNCGKHGHRQWECREKPKGNDSAAND-------MAQSSK-------LHVHWIIDSGCTGHHLTPQRDLFQNFRQVVHSPIATAGKGELDVEGQGDVEGLIWTAEGAMHIIFCNVFYVPEASDSILSVERVKYSSRMIL--GDEVEIDAAKRAI--GKQVKVNRLFSNDFTTLKNKEKKQQV---DTKLLHERLGHV--RDVPTIARQQGIR----LSGKLGDCSACGKGKASKQPVKTYREERTTESLELVHTDIAGPVDK-SFGGCRFAIIFVDDYSRMRKVHTLR 786
I+C+ C + GH Q+EC + KG + A D MA+ K + +W +DS C+ H +T ++ F + ++ + L+V+G G ++ + G + II V++VP+ + +++S+ +++ I E + A+R + ++ NR+F + QV +T++ H RL HV + + T+ +++ +R +SGK C C GK +++ + R+TE LEL+HTD+ GP+ S G R+ ++F+DD +R V+ L+
Sbjct: 258 IECYKCQQMGHYQFECPQWNKGVNYAEFDDTEELVLMAKEEKEDQETTECNGYWFLDSACSNH-MTGTKEWFTELDENINHSVKLGNGLRLNVQGIGSIK---FEVNGIIQII-TKVYFVPQLTSNLISIGQLQEKKVKITIENGECTVYHAQRGVIMKSEMSRNRMFIVHGVKKGEHTRCMQVTEDETQVWHRRLAHVNYKAIKTMQQKEMVRGLPEVSGKAMICETCNVGKQNRENIPKKSWWRSTEKLELIHTDLCGPITPASQSGKRYVLVFIDDLTRKTWVYLLQ 542
BLAST of mRNA_H-paniculata_contig20814.5411.1 vs. uniprot
Match: A0A5D3CBW3_CUCME (Integrase n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3CBW3_CUCME) HSP 1 Score: 103 bits (258), Expect = 1.810e-21 Identity = 82/292 (28.08%), Postives = 136/292 (46.58%), Query Frame = 1
Query: 1 IQCWNCGKHGHRQWECREKPKGNDSAANDMAQSSK-----------------LHVHWIIDSGCTGHHLTPQRDLFQNFRQVVHSPIATAGKGELDVEGQGDVEGLIWTAEGAMHIIFCNVFYVPEASDSILSVERVKYSSRMIL--GDEVEI-DAAKRAIGK-QVKVNRLFSNDFT--TLKNKEKKQQVDTKLLHERLGHV--RDVPTIARQQGIR----LSGKLGDCSACGKGKASKQPVKTYREERTTESLELVHTDIAGPVDKSF-GGCRFAIIFVDDYSRMRKVHTLR 786
IQC+NCGK+GH Q C G + +M + K + W +DSGC+ H +T R +F + S + T L V+GQGD+ L+ T +G + NVFYVP ++LS+ ++ + GD I D A I K ++ N++F +FT + + + L H R GH+ + + + + +R ++ + C C K + T + R ++ LEL+HTD+ GP+ + GG R+ I F+DD+SR ++ L+
Sbjct: 283 IQCFNCGKYGHFQANCWALKNGVGNTTMNMHKEQKKIDEGILFLACSVQDNVVEPTWYLDSGCSNH-MTGNRSIFVTLDESFQSEVKTGDNTRLQVKGQGDI--LVKTKKGTKRVT--NVFYVPGLKHNLLSIGQLLQRGLKVSFEGDICAIKDQAGVLIAKVKMTANKMFPLNFTYGQISCFSSILKDPSWLWHFRYGHLNFKSLSYLCKNHMVRGIQNINHETNICEVCILAKHHRDSFPTGKAWRASKPLELIHTDLCGPMRTTTNGGNRYFITFIDDFSRKLWIYFLK 569 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20814.5411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig20814.5411.1 >prot_H-paniculata_contig20814.5411.1 ID=prot_H-paniculata_contig20814.5411.1|Name=mRNA_H-paniculata_contig20814.5411.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=263bp IQCWNCGKHGHRQWECREKPKGNDSAANDMAQSSKLHVHWIIDSGCTGHHback to top mRNA from alignment at H-paniculata_contig20814:2529..3526- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig20814.5411.1 ID=mRNA_H-paniculata_contig20814.5411.1|Name=mRNA_H-paniculata_contig20814.5411.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=998bp|location=Sequence derived from alignment at H-paniculata_contig20814:2529..3526- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig20814:2529..3526- >mRNA_H-paniculata_contig20814.5411.1 ID=mRNA_H-paniculata_contig20814.5411.1|Name=mRNA_H-paniculata_contig20814.5411.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1578bp|location=Sequence derived from alignment at H-paniculata_contig20814:2529..3526- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |