mRNA_H-paniculata_contig20792.5405.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20792.5405.1
Unique NamemRNA_H-paniculata_contig20792.5405.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20792.5405.1 vs. uniprot
Match: A0A0K6G0M4_9AGAM (LOC100283929 n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A0K6G0M4_9AGAM)

HSP 1 Score: 78.2 bits (191), Expect = 5.230e-15
Identity = 40/94 (42.55%), Postives = 56/94 (59.57%), Query Frame = 2 
Query:  140 LHVHESSSETGSMGAMVYRVKNGDGEEVDVFLGWETSHSGSNHVYVECRKKDHWWHVGSKDCMKNLTQQSGTTSSDLGRNGINVVGSIGQSWSP 421
            LHVH S +  GS  A +YR       + D+F+GWET  +G+  VY + ++KD+WW V SKD M +    + +TS DL R G+ V+  IG S SP
Sbjct:  106 LHVHTSGAAVGSKAATIYR----SAADTDMFVGWETPWNGTPSVYADSQQKDYWWDVSSKDSMGDKLDDASSTS-DLTREGLEVMMDIGDSTSP 194
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20792.5405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K6G0M4_9AGAM5.230e-1542.55LOC100283929 n=1 Tax=Rhizoctonia solani TaxID=4569... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20792contigH-paniculata_contig20792:98..548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size451
Cds size351
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929543.6342206-UTR-H-paniculata_contig20792:97..1971622929543.6342206-UTR-H-paniculata_contig20792:97..197Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20792 98..197 +
1691480906.5380895-UTR-H-paniculata_contig20792:97..1971691480906.5380895-UTR-H-paniculata_contig20792:97..197Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20792 98..197 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929543.649976-CDS-H-paniculata_contig20792:197..5481622929543.649976-CDS-H-paniculata_contig20792:197..548Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20792 198..548 +
1691480906.5488644-CDS-H-paniculata_contig20792:197..5481691480906.5488644-CDS-H-paniculata_contig20792:197..548Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20792 198..548 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20792.5405.1prot_H-paniculata_contig20792.5405.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20792 198..548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20792.5405.1

>prot_H-paniculata_contig20792.5405.1 ID=prot_H-paniculata_contig20792.5405.1|Name=mRNA_H-paniculata_contig20792.5405.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
MRPALGAASGVCALHVHESSSETGSMGAMVYRVKNGDGEEVDVFLGWETS
HSGSNHVYVECRKKDHWWHVGSKDCMKNLTQQSGTTSSDLGRNGINVVGS
IGQSWSPLLTFFIGLA*
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mRNA from alignment at H-paniculata_contig20792:98..548+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20792.5405.1 ID=mRNA_H-paniculata_contig20792.5405.1|Name=mRNA_H-paniculata_contig20792.5405.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=451bp|location=Sequence derived from alignment at H-paniculata_contig20792:98..548+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGGTACCTCCACCATTATCAACATTTGCAACGAGACCGGATGGAGTGC
CACGTTGAACACCACCCACAGCTGGTACGGGCATATCTGGAAGTACCCAT
ATGCGCCCAGCATTGGGAGCGGCAAGTGGGGTGTGTGCCCTACATGTGCA
TGAGTCATCGTCCGAGACGGGCTCGATGGGCGCCATGGTTTACCGTGTTA
AGAACGGCGACGGTGAGGAAGTCGACGTGTTCTTGGGTTGGGAAACCTCG
CACAGCGGCTCCAACCATGTATATGTAGAGTGCCGTAAGAAGGACCACTG
GTGGCATGTGGGAAGCAAGGACTGCATGAAGAATCTGACCCAGCAGTCCG
GTACGACCAGCAGTGACCTGGGGAGAAATGGAATCAACGTCGTCGGTTCA
ATCGGGCAGTCATGGTCACCCCTGCTCACGTTCTTCATTGGCCTCGCTTA
G
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Coding sequence (CDS) from alignment at H-paniculata_contig20792:98..548+

>mRNA_H-paniculata_contig20792.5405.1 ID=mRNA_H-paniculata_contig20792.5405.1|Name=mRNA_H-paniculata_contig20792.5405.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig20792:98..548+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCCCAGCATTGGGAGCGGCAAGTGGGGTGTGTGCCCTACATGTGCA
TGAGTCATCGTCCGAGACGGGCTCGATGGGCGCCATGGTTTACCGTGTTA
AGAACGGCGACGGTGAGGAAGTCGACGTGTTCTTGGGTTGGGAAACCTCG
CACAGCGGCTCCAACCATGTATATGTAGAGTGCCGTAAGAAGGACCACTG
GTGGCATGTGGGAAGCAAGGACTGCATGAAGAATCTGACCCAGCAGTCCG
GTACGACCAGCAGTGACCTGGGGAGAAATGGAATCAACGTCGTCGGTTCA
ATCGGGCAGTCATGGTCACCCCTGCTCACGTTCTTCATTGGCCTCGCTTA
GATGCGCCCAGCATTGGGAGCGGCAAGTGGGGTGTGTGCCCTACATGTGC
ATGAGTCATCGTCCGAGACGGGCTCGATGGGCGCCATGGTTTACCGTGTT
AAGAACGGCGACGGTGAGGAAGTCGACGTGTTCTTGGGTTGGGAAACCTC
GCACAGCGGCTCCAACCATGTATATGTAGAGTGCCGTAAGAAGGACCACT
GGTGGCATGTGGGAAGCAAGGACTGCATGAAGAATCTGACCCAGCAGTCC
GGTACGACCAGCAGTGACCTGGGGAGAAATGGAATCAACGTCGTCGGTTC
AATCGGGCAGTCATGGTCACCCCTGCTCACGTTCTTCATTGGCCTCGCTT
AG
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