mRNA_H-paniculata_contig20787.5403.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20787.5403.1
Unique NamemRNA_H-paniculata_contig20787.5403.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20787.5403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20787contigH-paniculata_contig20787:2914..3720 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size807
Cds size498
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20787.5403.1prot_H-paniculata_contig20787.5403.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20787 2988..3485 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929543.294272-UTR-H-paniculata_contig20787:2913..29871622929543.294272-UTR-H-paniculata_contig20787:2913..2987Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20787 2914..2987 +
1691480906.3248765-UTR-H-paniculata_contig20787:2913..29871691480906.3248765-UTR-H-paniculata_contig20787:2913..2987Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20787 2914..2987 +
1622929543.3222303-UTR-H-paniculata_contig20787:3485..37201622929543.3222303-UTR-H-paniculata_contig20787:3485..3720Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20787 3486..3720 +
1691480906.3512237-UTR-H-paniculata_contig20787:3485..37201691480906.3512237-UTR-H-paniculata_contig20787:3485..3720Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20787 3486..3720 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929543.3097615-CDS-H-paniculata_contig20787:2987..34851622929543.3097615-CDS-H-paniculata_contig20787:2987..3485Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20787 2988..3485 +
1691480906.3397007-CDS-H-paniculata_contig20787:2987..34851691480906.3397007-CDS-H-paniculata_contig20787:2987..3485Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20787 2988..3485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20787.5403.1

>prot_H-paniculata_contig20787.5403.1 ID=prot_H-paniculata_contig20787.5403.1|Name=mRNA_H-paniculata_contig20787.5403.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=166bp
MGCTGCRLYRSNKSVWYADALTAAVIAAPQRGQEGRFTNIAECYMTTHSR
SAHQSRFMVRRRDFSVPLRASTTAAGAGATATSGGDRNNLSPGKQRLVNN
AAKPLASQSCGSSNAGQTRTAIAREITLEMSPSVPVSTSCGFVINVNGVT
GVGWDGRTSAMGENP*
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mRNA from alignment at H-paniculata_contig20787:2914..3720+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20787.5403.1 ID=mRNA_H-paniculata_contig20787.5403.1|Name=mRNA_H-paniculata_contig20787.5403.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=807bp|location=Sequence derived from alignment at H-paniculata_contig20787:2914..3720+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAACACTCATGTTTAGAACGGCCCTTGCCTTGAGGATGCATGGCAGTAA
GAAGTACCGTGGTATCGCTGTTGCATGGGATGCACTGGATGTCGATTATA
CCGTTCCAACAAGAGCGTATGGTACGCTGATGCTCTAACAGCAGCAGTAA
TAGCAGCACCCCAGCGTGGACAGGAGGGGAGGTTCACCAATATTGCTGAA
TGTTACATGACAACTCATTCCCGCTCCGCCCATCAAAGCAGGTTTATGGT
CAGGCGTCGAGACTTCAGCGTACCCTTGAGAGCCTCTACCACAGCTGCAG
GAGCAGGTGCAACAGCGACTTCAGGCGGGGACCGAAATAACCTATCCCCG
GGGAAGCAGCGCCTCGTCAACAACGCAGCAAAACCCTTGGCATCGCAATC
TTGTGGCAGCAGTAATGCTGGTCAAACGAGGACGGCGATTGCTCGGGAAA
TCACTCTAGAAATGTCCCCGTCGGTGCCTGTCAGTACCAGCTGTGGGTTT
GTTATAAATGTAAATGGGGTTACCGGAGTTGGGTGGGACGGGAGAACTTC
AGCGATGGGGGAGAACCCTTGATTTGGCCAGCGCTGGTGTTCCTTTTCGC
ACTTGTGTTTTGGAATGCCGGACGTTACGTTGCACGGCAAAAAATTTGCA
TCCATTCCATATAATTGTTTGTTTTGGTAGTTTCGACCCAATCGTCACCT
GCCAGACTCGCGCCCAAAATGTAGAAGATCGCTCGAAGCATCGTCGTACA
GGGGAATAATTAAACACTTATCGCTCCTCTAAGGCCAATTATTATGGGGA
TTGAAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig20787:2914..3720+

>mRNA_H-paniculata_contig20787.5403.1 ID=mRNA_H-paniculata_contig20787.5403.1|Name=mRNA_H-paniculata_contig20787.5403.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=996bp|location=Sequence derived from alignment at H-paniculata_contig20787:2914..3720+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGATGCACTGGATGTCGATTATACCGTTCCAACAAGAGCGTATGGTA
CGCTGATGCTCTAACAGCAGCAGTAATAGCAGCACCCCAGCGTGGACAGG
AGGGGAGGTTCACCAATATTGCTGAATGTTACATGACAACTCATTCCCGC
TCCGCCCATCAAAGCAGGTTTATGGTCAGGCGTCGAGACTTCAGCGTACC
CTTGAGAGCCTCTACCACAGCTGCAGGAGCAGGTGCAACAGCGACTTCAG
GCGGGGACCGAAATAACCTATCCCCGGGGAAGCAGCGCCTCGTCAACAAC
GCAGCAAAACCCTTGGCATCGCAATCTTGTGGCAGCAGTAATGCTGGTCA
AACGAGGACGGCGATTGCTCGGGAAATCACTCTAGAAATGTCCCCGTCGG
TGCCTGTCAGTACCAGCTGTGGGTTTGTTATAAATGTAAATGGGGTTACC
GGAGTTGGGTGGGACGGGAGAACTTCAGCGATGGGGGAGAACCCTTGAAT
GGGATGCACTGGATGTCGATTATACCGTTCCAACAAGAGCGTATGGTACG
CTGATGCTCTAACAGCAGCAGTAATAGCAGCACCCCAGCGTGGACAGGAG
GGGAGGTTCACCAATATTGCTGAATGTTACATGACAACTCATTCCCGCTC
CGCCCATCAAAGCAGGTTTATGGTCAGGCGTCGAGACTTCAGCGTACCCT
TGAGAGCCTCTACCACAGCTGCAGGAGCAGGTGCAACAGCGACTTCAGGC
GGGGACCGAAATAACCTATCCCCGGGGAAGCAGCGCCTCGTCAACAACGC
AGCAAAACCCTTGGCATCGCAATCTTGTGGCAGCAGTAATGCTGGTCAAA
CGAGGACGGCGATTGCTCGGGAAATCACTCTAGAAATGTCCCCGTCGGTG
CCTGTCAGTACCAGCTGTGGGTTTGTTATAAATGTAAATGGGGTTACCGG
AGTTGGGTGGGACGGGAGAACTTCAGCGATGGGGGAGAACCCTTGA
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