mRNA_H-paniculata_contig20786.5402.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20786.5402.1
Unique NamemRNA_H-paniculata_contig20786.5402.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20786.5402.1 vs. uniprot
Match: D7FYA4_ECTSI (tRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarboxypropyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYA4_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 4.400e-39
Identity = 68/97 (70.10%), Postives = 78/97 (80.41%), Query Frame = 1 
Query:    1 VLSRRQVFHHAILNLPNSALEFLDVFRDVRWGDQGFSSPPMVHVYCFSKADDFVQDALDRANGVMGTGLTRAQVQVRVVRDVAPKKPMLCLSFRAPN 291
            ++  RQVFHHAILNLP+SAL FLD FR V W + GF SPPMVHVYCFSKA D  QDALDRAN  MG+ LT+ +V++ VVRDVAP KPMLCLSF AP+
Sbjct:  250 LIRERQVFHHAILNLPDSALTFLDTFRGVHWREHGFDSPPMVHVYCFSKAADPKQDALDRANEAMGSSLTQREVKIHVVRDVAPNKPMLCLSFLAPD 346
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BLAST of mRNA_H-paniculata_contig20786.5402.1 vs. uniprot
Match: A0A835Z8A4_9STRA (tRNA (guanine(37)-N1)-methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8A4_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.310e-30
Identity = 57/96 (59.38%), Postives = 70/96 (72.92%), Query Frame = 1 
Query:    1 VLSRRQVFHHAILNLPNSALEFLDVFRDVRWGDQGFSSPPMVHVYCFSKADDFVQDALDRANGVMGTGLTRAQVQVRVVRDVAPKKPMLCLSFRAP 288
            +L+R   F H I+NLP SA++FLD FRD+ W  +GF  PP+VH YCFS+ DD V DA+ RA   +G  L  A V+V VVRDVAPKKPMLCL+FRAP
Sbjct:  318 LLARGVKFGHVIMNLPASAIDFLDAFRDIDWAARGFRDPPLVHCYCFSRGDDAVGDAIARAAAALGAPLAAADVKVHVVRDVAPKKPMLCLTFRAP 413
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BLAST of mRNA_H-paniculata_contig20786.5402.1 vs. uniprot
Match: A0A7S2RAB3_9STRA (tRNA (guanine(37)-N1)-methyltransferase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RAB3_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.410e-20
Identity = 56/116 (48.28%), Postives = 68/116 (58.62%), Query Frame = 1 
Query:   22 FHHAILNLPNSALEFLDVFRDVRWGDQGFSSP-------PMVHVYCFSKA----DDFVQDALDRANGVMGTGLTRAQVQVRVVRDVAPKKPMLCLSFRAPN---GTPPAAAGGSMT 327
            F HAI+NLP +A+EFLD FR       G+ SP       PM+HVYCF K     +D V+ A+ RA   +G  L R +VQ  +VRDVAPKKPM+CLSFR P      PP   G S T
Sbjct:  362 FDHAIMNLPQTAIEFLDAFR-------GYLSPTSDPVALPMIHVYCFEKGHDTEEDAVRSAIKRAEEALGGPLKREEVQAHMVRDVAPKKPMICLSFRLPYEIASAPPLPLGTSST 470
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BLAST of mRNA_H-paniculata_contig20786.5402.1 vs. uniprot
Match: A0A7S2P448_9STRA (tRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarboxypropyltransferase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P448_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 3.610e-18
Identity = 44/95 (46.32%), Postives = 60/95 (63.16%), Query Frame = 1 
Query:   19 VFHHAILNLPNSALEFLDVFRDVRWGDQGFSSPPMVHVYCFSK---ADDFVQDALDRANGVMGTGLTRAQ--VQVRVVRDVAPKKPMLCLSFRAP 288
            ++HHAI+NLP  A+EFLDVFR  +      +  P +HV+CF K    +D  + AL R    +G  L R +  V++ VVRDV+PKK MLC+SFR P
Sbjct:   49 IYHHAIMNLPAIAIEFLDVFRGWKPPSTDPTHMPTIHVHCFVKYVTLEDMEETALKRCEKALGCSLNRVRDNVEIHVVRDVSPKKNMLCISFRLP 143
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BLAST of mRNA_H-paniculata_contig20786.5402.1 vs. uniprot
Match: A0A7S1XZL2_9STRA (tRNA (guanine(37)-N1)-methyltransferase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XZL2_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 4.610e-18
Identity = 49/94 (52.13%), Postives = 60/94 (63.83%), Query Frame = 1 
Query:   22 FHHAILNLPNSALEFLDVFRDVRWG--DQGFSSPPMVHVYCFSKADDFVQDALDRANGVMG---TGLTRAQVQVRVVRDVAPKKPMLCLSFRAP 288
            F   ++NLP +ALEFLDVFR +  G  D   ++ P VH YCFS ADD  +D  DRA  +MG    GL  A    RVVRDVAPKK M+CL+F+ P
Sbjct:  211 FQRVLMNLPATALEFLDVFRGLWRGREDVVAAALPTVHCYCFSNADDLEKDVFDRAEAIMGYDVRGLPGASA--RVVRDVAPKKMMMCLTFKVP 302
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BLAST of mRNA_H-paniculata_contig20786.5402.1 vs. uniprot
Match: A0A8D0C1X0_9SAUR (tRNA (guanine(37)-N1)-methyltransferase n=1 Tax=Salvator merianae TaxID=96440 RepID=A0A8D0C1X0_9SAUR)

HSP 1 Score: 84.3 bits (207), Expect = 9.480e-17
Identity = 45/95 (47.37%), Postives = 57/95 (60.00%), Query Frame = 1 
Query:    4 LSRRQVFHHAILNLPNSALEFLDVFRDVRWGDQGFSSPPMVHVYCFSKADDFVQDALDRANGVMGTGLTRAQVQVRVVRDVAPKKPMLCLSFRAP 288
            L  R+   H  +NLP  A+EFLDVFR +  GD G +  P+VH YCFSK D+ VQD  +RA   +G  L      V  VR+VAP K M+C+SF  P
Sbjct:  372 LKERKCSLHITMNLPAMAIEFLDVFRHLLEGDPGSTDLPIVHCYCFSKHDNPVQDVQERAEAYLGCSL-EGLCTVDPVRNVAPNKEMMCISFSIP 465
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BLAST of mRNA_H-paniculata_contig20786.5402.1 vs. uniprot
Match: A0A670I0C5_PODMU (tRNA (guanine(37)-N1)-methyltransferase n=5 Tax=Lacertinae TaxID=162266 RepID=A0A670I0C5_PODMU)

HSP 1 Score: 84.3 bits (207), Expect = 9.690e-17
Identity = 44/95 (46.32%), Postives = 57/95 (60.00%), Query Frame = 1 
Query:    4 LSRRQVFHHAILNLPNSALEFLDVFRDVRWGDQGFSSPPMVHVYCFSKADDFVQDALDRANGVMGTGLTRAQVQVRVVRDVAPKKPMLCLSFRAP 288
            L  R    H ++NLP  A+EFLDVFR +  G+ G +S P VH YCFSK D+ VQD  +R    +G  L      V +VR+VAP K M+C+SF  P
Sbjct:  399 LKERNSCLHIVMNLPAMAVEFLDVFRHLLDGEPGSTSLPTVHCYCFSKHDNPVQDVQERVEACLGISL-EGLCSVELVRNVAPNKDMMCISFSLP 492
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BLAST of mRNA_H-paniculata_contig20786.5402.1 vs. uniprot
Match: UPI000A2A94A9 (tRNA (guanine(37)-N1)-methyltransferase isoform X2 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A94A9)

HSP 1 Score: 84.0 bits (206), Expect = 1.110e-16
Identity = 45/96 (46.88%), Postives = 60/96 (62.50%), Query Frame = 1 
Query:   16 QVFHHAILNLPNSALEFLDVFRDVRWGDQGFSSP-----PMVHVYCFSKADDFVQDALDRANGVMGTGLTRAQVQVRVVRDVAPKKPMLCLSFRAP 288
            ++F H ++NLP SA++FLDVFR +    Q   S      PM+H YCFSKAD+  +D   +A  V+G  L  +   V  VRDVAPKK M+C+SFR P
Sbjct:  308 KLFDHVVMNLPASAIQFLDVFRGLLANHQSLPSKDTLILPMIHCYCFSKADNPKEDVKLQAEEVLGVELP-SDCSVYYVRDVAPKKAMMCISFRLP 402
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BLAST of mRNA_H-paniculata_contig20786.5402.1 vs. uniprot
Match: A0A8K1FRI0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FRI0_PYTOL)

HSP 1 Score: 82.4 bits (202), Expect = 3.570e-16
Identity = 44/96 (45.83%), Postives = 58/96 (60.42%), Query Frame = 1 
Query:    1 VLSRRQVFHHAILNLPNSALEFLDVFRDVRWGDQGFSSPPMVHVYCFSKADDFVQDALDRANGVMGTGLTRAQVQVRVVRDVAPKKPMLCLSFRAP 288
            +L  R+ F   ++NLP  ALEFLDVF  V   D      P +H YCFS A+D  +D  +RA  +MG  L  A+ +   VRDVAPKK M+C+SF+ P
Sbjct:  290 LLRERKQFTQVLMNLPAIALEFLDVF--VGKFDNWEGDLPYIHCYCFSNAEDVEKDVKERAEAIMGGKLDPARTKFHQVRDVAPKKVMMCISFQLP 383
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BLAST of mRNA_H-paniculata_contig20786.5402.1 vs. uniprot
Match: A0A6P8IQM8_ACTTE (tRNA (guanine(37)-N1)-methyltransferase n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IQM8_ACTTE)

HSP 1 Score: 81.6 bits (200), Expect = 7.670e-16
Identity = 48/104 (46.15%), Postives = 64/104 (61.54%), Query Frame = 1 
Query:    7 SRRQVFHHAILNLPNSALEFLDVFRDV--------RWGDQGFSSP--PMVHVYCFSKADDFVQDALDRANGVMGTGLTRAQVQVRVVRDVAPKKPMLCLSFRAP 288
            S  Q+F+H I+NLP SA++FLDVF+ +        R  D   S    PMVH YCFSK++   QDA  +A  ++G  +  +  +V  VRDVAPKK MLC+SFR P
Sbjct:  311 SGNQMFNHVIMNLPASAVQFLDVFKGLFINFKDRFRVDDSSKSRVILPMVHCYCFSKSEAPEQDAQSQAEVILGVKMG-SDCKVHYVRDVAPKKAMLCVSFRLP 413
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20786.5402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYA4_ECTSI4.400e-3970.10tRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarbox... [more]
A0A835Z8A4_9STRA1.310e-3059.38tRNA (guanine(37)-N1)-methyltransferase n=1 Tax=Tr... [more]
A0A7S2RAB3_9STRA1.410e-2048.28tRNA (guanine(37)-N1)-methyltransferase n=1 Tax=Rh... [more]
A0A7S2P448_9STRA3.610e-1846.32tRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarbox... [more]
A0A7S1XZL2_9STRA4.610e-1852.13tRNA (guanine(37)-N1)-methyltransferase n=1 Tax=Ph... [more]
A0A8D0C1X0_9SAUR9.480e-1747.37tRNA (guanine(37)-N1)-methyltransferase n=1 Tax=Sa... [more]
A0A670I0C5_PODMU9.690e-1746.32tRNA (guanine(37)-N1)-methyltransferase n=5 Tax=La... [more]
UPI000A2A94A91.110e-1646.88tRNA (guanine(37)-N1)-methyltransferase isoform X2... [more]
A0A8K1FRI0_PYTOL3.570e-1645.83Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6P8IQM8_ACTTE7.670e-1646.15tRNA (guanine(37)-N1)-methyltransferase n=1 Tax=Ac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20786contigH-paniculata_contig20786:128..1851 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score145.6
Seed ortholog evalue1.4e-32
Seed eggNOG ortholog2880.D7FYA4
Preferred nameTRM5
KEGG rclassRC00003,RC00334
KEGG koko:K15429
KEGG ReactionR00597
Hectar predicted targeting categoryother localisation
GOsGO:0000959,GO:0000963,GO:0001510,GO:0002939,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009019,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0030431,GO:0030488,GO:0031974,GO:0032259,GO:0032501,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0052906,GO:0070013,GO:0070525,GO:0070900,GO:0070901,GO:0071704,GO:0090304,GO:0090646,GO:0140053,GO:0140098,GO:0140101,GO:1900864,GO:1901360
EggNOG free text desc.tRNA (guanine(37)-N(1))-methyltransferase activity
EggNOG OGsCOG2520@1,KOG2078@2759
EC2.1.1.228
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Exons2
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929543.2424173-CDS-H-paniculata_contig20786:127..2921622929543.2424173-CDS-H-paniculata_contig20786:127..292Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20786 128..292 +
1691480906.3020751-CDS-H-paniculata_contig20786:127..2921691480906.3020751-CDS-H-paniculata_contig20786:127..292Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20786 128..292 +
1622929543.2571476-CDS-H-paniculata_contig20786:1683..18511622929543.2571476-CDS-H-paniculata_contig20786:1683..1851Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20786 1684..1851 +
1691480906.3147721-CDS-H-paniculata_contig20786:1683..18511691480906.3147721-CDS-H-paniculata_contig20786:1683..1851Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20786 1684..1851 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20786.5402.1prot_H-paniculata_contig20786.5402.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20786 128..1851 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20786.5402.1

>prot_H-paniculata_contig20786.5402.1 ID=prot_H-paniculata_contig20786.5402.1|Name=mRNA_H-paniculata_contig20786.5402.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
VLSRRQVFHHAILNLPNSALEFLDVFRDVRWGDQGFSSPPMVHVYCFSKA
DDFVQDALDRANGVMGTGLTRAQVQVRVVRDVAPKKPMLCLSFRAPNGTP
PAAAGGSMTAD
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mRNA from alignment at H-paniculata_contig20786:128..1851+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20786.5402.1 ID=mRNA_H-paniculata_contig20786.5402.1|Name=mRNA_H-paniculata_contig20786.5402.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1724bp|location=Sequence derived from alignment at H-paniculata_contig20786:128..1851+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCCTGTCCCGTCGACAGGTGTTCCACCATGCCATCTTGAACCTTCCCAA
CTCCGCATTGGAGTTCCTAGATGTTTTTCGGGACGTTAGGTGGGGGGATC
AGGGCTTCTCGTCCCCGCCCATGGTGCACGTTTACTGCTTTAGCAAAGCG
GACGACTTTGTACAGGTAAGGAATTGAAGTGAAGTTATGTCTCGACTTTT
TCCAAGCCGTTTCAGATTATTATTATAATTATTATTCCGTTTCTTCTGTT
GAGCCTCGGCTGCATACCCCGGCCGCTGAAACACGTTGCATGTGCGCAGT
ATTCCAAATCTGGTTCAACGAGATTTATTTTTGTTTAGTGGACGAAAACC
GTTGCTGGATGCAGTAAAAAATGTTGACAAGAAATTATGTTGAAATGATG
GTCTCCCTTACCGTATTAAGTAGCGAGGGTTTTTGAGTACTACGGGACGT
TCGCTATGCAACGCTTTTTTGGTCCTTTTATTCCGTGTGGTGACGATGGG
TACATTCTTCCTTGGGGACGAGGTACGTCTGGATTGAACCATTGGATTAG
CAGCTTTTCGACTTTTCAGAGGGGTGCCCAAGAGTAGATCTGGGGCCCCA
AGAGCAGCTCTACGATGGGTTACGTCCCGAGGTCTGATGTAACCTAATGT
TTTTTTATATGAAGAAATGTACTAAAAACAGACCTCAGAAAGCACATCTC
GGAGGGCTGGGTCCCGAACGGGTTAATAGCGTAAAAAATGCACCTATGGA
ACGACTTTCTAGCTATGGTGTTGACATTTGTAATGTTCACTATAACTCTA
GAACGGAGTGGTGCATAAAGTGCAATAGAACACGCGCCGTGGAAACCTGA
TAGCCAACCCGTTATGCATGCTGTCCCCAATGGTTAGGCCGCCTGTCTTT
GGTAGTATAGGCGCCGCTTTCATCTTGCGTCACGCACATGCACTCACGCT
ATTTAGTAACTCACTTGATCAGTTTTCCGAGTCCGTTGGTGGCTACCACG
GTTTGTTTGACACACATCGGATGACGAAGATAAACGTTGAATTTTTCTGT
TTTCAATCTCGATTTTACTCGAAAAATTGGGTACTACTTCACAGCGAGTG
GCACCGAGCGAGAGTTGCGGTCCTCGGTCATGACCGTCACGACAGGTCTG
TTTATCGCATCGGCGGGGTGTGACCTGTTTTTTATTGTTTCAAACGCGAT
TTTATCTTGCACTACTACAAGGGCGTGTCATTGGAAGCGATCTTGCGCAA
AAACATATGTCGTTTTGCCGGGGTCTTTCAATCGCGTAAGGCCACCGCTT
TCGGTGCTGATAACAGGGGGTTCTAGGTACGTACCTGAGGTCATCGAGAT
CTATTGGAAAATGACATATAAACATTTGGTGTATGATGTACTCTCTCTGC
TGTAGAGAGTGCACGCTTTTGCTTCTCGAGAAAATCGAGTTTAAACAATC
TTTCAAATCACCCGGTGGAGGCGTGCGTGTTGAAAAATGCCATATACATA
CTTCTACTCAGTATCCCTCTCTACCATCACTCCATTTCCATTTCTGTAAC
CCACAGGACGCGTTAGATCGCGCCAACGGCGTCATGGGCACGGGCCTGAC
CCGCGCTCAGGTGCAGGTGCGGGTAGTGCGCGACGTGGCCCCGAAGAAAC
CGATGCTGTGCCTGTCCTTCAGGGCACCAAACGGGACCCCCCCCGCCGCC
GCTGGCGGTAGCATGACAGCCGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig20786:128..1851+

>mRNA_H-paniculata_contig20786.5402.1 ID=mRNA_H-paniculata_contig20786.5402.1|Name=mRNA_H-paniculata_contig20786.5402.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig20786:128..1851+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCCTGTCCCGTCGACAGGTGTTCCACCATGCCATCTTGAACCTTCCCAA
CTCCGCATTGGAGTTCCTAGATGTTTTTCGGGACGTTAGGTGGGGGGATC
AGGGCTTCTCGTCCCCGCCCATGGTGCACGTTTACTGCTTTAGCAAAGCG
GACGACTTTGTACAGGTCCTGTCCCGTCGACAGGTGTTCCACCATGCCAT
CTTGAACCTTCCCAACTCCGCATTGGAGTTCCTAGATGTTTTTCGGGACG
TTAGGTGGGGGGATCAGGGCTTCTCGTCCCCGCCCATGGTGCACGTTTAC
TGCTTTAGCAAAGCGGACGACTTTGTACAGGACGCGTTAGATCGCGCCAA
CGGCGTCATGGGCACGGGCCTGACCCGCGCTCAGGTGCAGGTGCGGGTAG
TGCGCGACGTGGCCCCGAAGAAACCGATGCTGTGCCTGTCCTTCAGGGCA
CCAAACGGGACCCCCCCCGCCGCCGCTGGCGGTAGCATGACAGCCGACGA
CGCGTTAGATCGCGCCAACGGCGTCATGGGCACGGGCCTGACCCGCGCTC
AGGTGCAGGTGCGGGTAGTGCGCGACGTGGCCCCGAAGAAACCGATGCTG
TGCCTGTCCTTCAGGGCACCAAACGGGACCCCCCCCGCCGCCGCTGGCGG
TAGCATGACAGCCGAC
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