mRNA_H-paniculata_contig20757.5392.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20757.5392.1
Unique NamemRNA_H-paniculata_contig20757.5392.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20757.5392.1 vs. uniprot
Match: D8LRA5_ECTSI (SEC7 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRA5_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 5.070e-26
Identity = 49/73 (67.12%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:    1 DEDSVQACEAVAELVEGLVGCRFEETSHGHDEVVRARIMQVLVGCLDGGVGRWLPDEVVWEVVQTCLANVDQM 219
            +E+SV A EAV +LV+ L+GCRFEET   HDE VRARIM VL  CL+GG G WL DEVVW V+QTC+AN+DQM
Sbjct:   99 EENSVHASEAVGDLVDALIGCRFEETQQDHDEAVRARIMHVLAACLEGGAGVWLSDEVVWAVLQTCMANLDQM 171
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BLAST of mRNA_H-paniculata_contig20757.5392.1 vs. uniprot
Match: A0A6H5L1A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1A5_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 8.590e-17
Identity = 36/52 (69.23%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:   67 FEETSHGHDEVVRARIMQVLVGCLDGGVGRWLPDEVVWEVVQTCLANVDQMV 222
            FEET   HDE VRARIM VL  CL+GG G  L DEVVW V+QTC+AN+DQMV
Sbjct:  101 FEETQQDHDEAVRARIMHVLAACLEGGAGVCLSDEVVWAVLQTCMANLDQMV 152
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BLAST of mRNA_H-paniculata_contig20757.5392.1 vs. uniprot
Match: A0A7S0DPM9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DPM9_9EUKA)

HSP 1 Score: 58.5 bits (140), Expect = 3.720e-8
Identity = 23/58 (39.66%), Postives = 36/58 (62.07%), Query Frame = 1 
Query:   25 EAVAELVEGLVGCRFEETSHGHDEVVRARIMQVLVGCLDGGVGRWLPDEVVWEVVQTC 198
            +A+  +V+ L  CRFE T H  DE+   +++Q    CL    G++LP+E VW ++QTC
Sbjct:   74 DALVAVVDALTHCRFESTDHRRDELTLMKMLQAQAACLSCSAGKYLPEEDVWTMIQTC 131
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BLAST of mRNA_H-paniculata_contig20757.5392.1 vs. uniprot
Match: A0A251UD68_HELAN (Putative sec7 domain-containing protein n=2 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UD68_HELAN)

HSP 1 Score: 54.3 bits (129), Expect = 1.160e-6
Identity = 27/76 (35.53%), Postives = 43/76 (56.58%), Query Frame = 1 
Query:    1 DEDSVQACEAVAELVEGLVGCRFEETSHGHDEVVRARIMQVLVGCLDGGVGRWLPDEVVWEVVQTCLANVDQMVSR 228
            D + V   +A+ ++V+ ++ CRFE T    +EVV  +I+QVL+ CL       L ++ V +VV TC   V Q  S+
Sbjct:  123 DLNIVNVADALRQIVDAVMSCRFEVTDPASEEVVLVKILQVLLACLKNKASVMLSNQHVCDVVNTCFQIVHQASSK 198
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BLAST of mRNA_H-paniculata_contig20757.5392.1 vs. uniprot
Match: A0A1E3QMU8_9ASCO (SEC7 domain-containing protein (Fragment) n=1 Tax=Babjeviella inositovora NRRL Y-12698 TaxID=984486 RepID=A0A1E3QMU8_9ASCO)

HSP 1 Score: 49.7 bits (117), Expect = 4.950e-5
Identity = 25/67 (37.31%), Postives = 40/67 (59.70%), Query Frame = 1 
Query:    7 DSVQACEAVAELVEGLVGCRFEETSHGHDEVVRARIMQVLVGCLDGG-VGRWLPDEVVWEVVQTCLA 204
            DS     +++++V  L  CRFE      D+ V  +++++L   L GG +  +L DEVV EV+QTCL+
Sbjct:  128 DSKNIHVSISQVVSALTHCRFEAGDQASDDAVLLKVLRLLEALLVGGTISAYLTDEVVTEVIQTCLS 194
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BLAST of mRNA_H-paniculata_contig20757.5392.1 vs. uniprot
Match: C4Y877_CLAL4 (SEC7 domain-containing protein n=2 Tax=Clavispora lusitaniae TaxID=36911 RepID=C4Y877_CLAL4)

HSP 1 Score: 49.7 bits (117), Expect = 4.950e-5
Identity = 21/59 (35.59%), Postives = 37/59 (62.71%), Query Frame = 1 
Query:   28 AVAELVEGLVGCRFEETSHGHDEVVRARIMQVLVGCLDGGVGRWLPDEVVWEVVQTCLA 204
            ++ +L   L  CRFE +  G D+ V  +++++L   +D  +   LP++VV EV+QTCL+
Sbjct:  162 SLIQLASSLTHCRFEASDQGSDDSVLLKVLRLLERIIDSDISALLPNQVVSEVIQTCLS 220
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BLAST of mRNA_H-paniculata_contig20757.5392.1 vs. uniprot
Match: A0A0V1Q1L1_9ASCO (SEC7 domain-containing protein n=2 Tax=Debaryomyces TaxID=4958 RepID=A0A0V1Q1L1_9ASCO)

HSP 1 Score: 48.9 bits (115), Expect = 9.270e-5
Identity = 20/59 (33.90%), Postives = 37/59 (62.71%), Query Frame = 1 
Query:   28 AVAELVEGLVGCRFEETSHGHDEVVRARIMQVLVGCLDGGVGRWLPDEVVWEVVQTCLA 204
            ++ +++  L  CRFE      D+ V  +++++L   L+  + + LP+EV+ EVVQTCL+
Sbjct:  174 SLIQIISALTHCRFEAADQSSDDAVLLKVLRLLEDILESPLSKLLPNEVISEVVQTCLS 232
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20757.5392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LRA5_ECTSI5.070e-2667.12SEC7 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L1A5_9PHAE8.590e-1769.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0DPM9_9EUKA3.720e-839.66Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A251UD68_HELAN1.160e-635.53Putative sec7 domain-containing protein n=2 Tax=He... [more]
A0A1E3QMU8_9ASCO4.950e-537.31SEC7 domain-containing protein (Fragment) n=1 Tax=... [more]
C4Y877_CLAL44.950e-535.59SEC7 domain-containing protein n=2 Tax=Clavispora ... [more]
A0A0V1Q1L1_9ASCO9.270e-533.90SEC7 domain-containing protein n=2 Tax=Debaryomyce... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20757contigH-paniculata_contig20757:3986..4225 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.8
Seed ortholog evalue6.1e-22
Seed eggNOG ortholog2880.D8LRA5
KEGG koko:K18442,ko:K18443
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
GOsGO:0000137,GO:0003674,GO:0005085,GO:0005086,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0005798,GO:0005802,GO:0005829,GO:0006810,GO:0006888,GO:0006890,GO:0006891,GO:0006914,GO:0006996,GO:0007010,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0012505,GO:0016020,GO:0016043,GO:0016192,GO:0016236,GO:0019898,GO:0019899,GO:0030029,GO:0030036,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0048193,GO:0051020,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061919,GO:0065007,GO:0065009,GO:0071840,GO:0097708,GO:0098772,GO:0098791
EggNOG free text desc.regulation of ARF protein signal transduction
EggNOG OGsCOG5307@1,KOG0928@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size240
Cds size240
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929542.2760153-CDS-H-paniculata_contig20757:3985..42251622929542.2760153-CDS-H-paniculata_contig20757:3985..4225Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20757 3986..4225 -
1691480905.9300408-CDS-H-paniculata_contig20757:3985..42251691480905.9300408-CDS-H-paniculata_contig20757:3985..4225Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20757 3986..4225 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20757.5392.1prot_H-paniculata_contig20757.5392.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20757 3986..4225 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20757.5392.1

>prot_H-paniculata_contig20757.5392.1 ID=prot_H-paniculata_contig20757.5392.1|Name=mRNA_H-paniculata_contig20757.5392.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
DEDSVQACEAVAELVEGLVGCRFEETSHGHDEVVRARIMQVLVGCLDGGV
GRWLPDEVVWEVVQTCLANVDQMVSRYYT*
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mRNA from alignment at H-paniculata_contig20757:3986..4225-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20757.5392.1 ID=mRNA_H-paniculata_contig20757.5392.1|Name=mRNA_H-paniculata_contig20757.5392.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=240bp|location=Sequence derived from alignment at H-paniculata_contig20757:3986..4225- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGAGGACTCAGTGCAAGCGTGCGAGGCAGTCGCAGAGCTAGTGGAAGG
GTTGGTCGGATGTAGGTTTGAGGAGACCTCGCACGGACACGACGAGGTCG
TGCGCGCGCGGATTATGCAGGTCCTTGTGGGGTGCTTGGACGGGGGCGTG
GGGAGGTGGCTGCCGGACGAGGTGGTGTGGGAGGTCGTGCAGACGTGCCT
GGCGAACGTTGACCAGATGGTGAGTAGGTACTACACTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig20757:3986..4225-

>mRNA_H-paniculata_contig20757.5392.1 ID=mRNA_H-paniculata_contig20757.5392.1|Name=mRNA_H-paniculata_contig20757.5392.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig20757:3986..4225- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGAGGACTCAGTGCAAGCGTGCGAGGCAGTCGCAGAGCTAGTGGAAGG
GTTGGTCGGATGTAGGTTTGAGGAGACCTCGCACGGACACGACGAGGTCG
TGCGCGCGCGGATTATGCAGGTCCTTGTGGGGTGCTTGGACGGGGGCGTG
GGGAGGTGGCTGCCGGACGAGGTGGTGTGGGAGGTCGTGCAGACGTGCCT
GGCGAACGTTGACCAGATGGTGAGTAGGTACTACACTTGAGATGAGGACT
CAGTGCAAGCGTGCGAGGCAGTCGCAGAGCTAGTGGAAGGGTTGGTCGGA
TGTAGGTTTGAGGAGACCTCGCACGGACACGACGAGGTCGTGCGCGCGCG
GATTATGCAGGTCCTTGTGGGGTGCTTGGACGGGGGCGTGGGGAGGTGGC
TGCCGGACGAGGTGGTGTGGGAGGTCGTGCAGACGTGCCTGGCGAACGTT
GACCAGATGGTGAGTAGGTACTACACTTGA
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