mRNA_H-paniculata_contig20746.5387.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20746.5387.1
Unique NamemRNA_H-paniculata_contig20746.5387.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig20746.5387.1 vs. uniprot
Match: D8LKP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKP4_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 5.820e-18
Identity = 39/58 (67.24%), Postives = 48/58 (82.76%), Query Frame = 1
Query:    4 TALELGAGTGVCGLTAAIAIGCPVLLTDRRCDVLENLRANVVLNGLEDRVQVVRLAWG 177
            T LELGAGTGVCG+TA++++GC V+LTDRR D+LENLR N+ LNGL  R +V RL WG
Sbjct:  149 TVLELGAGTGVCGMTASLSLGCSVVLTDRRSDILENLRININLNGLATRARVARLEWG 206          
BLAST of mRNA_H-paniculata_contig20746.5387.1 vs. uniprot
Match: A0A6H5KU26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU26_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.240e-17
Identity = 39/58 (67.24%), Postives = 48/58 (82.76%), Query Frame = 1
Query:    4 TALELGAGTGVCGLTAAIAIGCPVLLTDRRCDVLENLRANVVLNGLEDRVQVVRLAWG 177
            T LELGAGTGVCG+ A++++GC V+LTDRR D+LENLR N+ LNGL  R +VVRL WG
Sbjct:  183 TVLELGAGTGVCGMAASLSLGCSVVLTDRRSDILENLRKNINLNGLATRARVVRLEWG 240          
BLAST of mRNA_H-paniculata_contig20746.5387.1 vs. uniprot
Match: A0A836CN38_9STRA (Putative methyltransferase-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN38_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 2.320e-9
Identity = 33/55 (60.00%), Postives = 35/55 (63.64%), Query Frame = 1
Query:   10 LELGAGTGVCGLTAAIAIGCPVLLTDRRCDVLENLRANVVLNGLEDRVQVVRLAW 174
            +ELGAGTG CGL AA   G   LLTD     L  LRANV LNG+E   QV RLAW
Sbjct:   45 IELGAGTGACGLLAAKLCGIRTLLTDGEEGALHQLRANVRLNGVEGTTQVQRLAW 99          
BLAST of mRNA_H-paniculata_contig20746.5387.1 vs. uniprot
Match: A0A843UVG8_COLES (Uncharacterized protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843UVG8_COLES)

HSP 1 Score: 57.4 bits (137), Expect = 3.590e-8
Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 1
Query:    4 TALELGAGTGVCGLTAAIAIGCPVLLTDRRCDVLENLRANVVLNGLEDRVQVVRLAWG 177
            T LELGAGTG+ GLTAA+     V+LTD+   +L  LR N  +NGL DRV+V  L+WG
Sbjct:  164 TVLELGAGTGLPGLTAALLGAARVVLTDQ-APLLPGLRTNAAVNGLADRVEVRELSWG 220          
BLAST of mRNA_H-paniculata_contig20746.5387.1 vs. uniprot
Match: UPI001FB0C3AB (protein N-lysine methyltransferase METTL21A-like n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB0C3AB)

HSP 1 Score: 55.5 bits (132), Expect = 1.040e-7
Identity = 32/58 (55.17%), Postives = 38/58 (65.52%), Query Frame = 1
Query:    4 TALELGAGTGVCGLTAAIAIGCPVLLTDRRCDVLENLRANVVLNGLEDRVQVVRLAWG 177
            T +ELGAGTG+ GLT AI     V LTD    ++  L  NV +NGLEDRV+V RL WG
Sbjct:   60 TVIELGAGTGLPGLTTAILGASHVFLTDVE-SLIPTLNKNVEVNGLEDRVKVSRLVWG 116          
BLAST of mRNA_H-paniculata_contig20746.5387.1 vs. uniprot
Match: UPI00103616CD (protein N-lysine methyltransferase METTL21A-like n=1 Tax=Camellia sinensis TaxID=4442 RepID=UPI00103616CD)

HSP 1 Score: 54.7 bits (130), Expect = 2.170e-7
Identity = 34/58 (58.62%), Postives = 38/58 (65.52%), Query Frame = 1
Query:    4 TALELGAGTGVCGLTAAIAIGCPVLLTDRRCDVLENLRANVVLNGLEDRVQVVRLAWG 177
            T LELGAGTG+ GLTAA      V+LTD    +L  LR NV  NGL DRV+V RL WG
Sbjct:   60 TVLELGAGTGLPGLTAAALGASRVILTDVE-PLLPVLRKNVEANGLGDRVEVSRLVWG 116          
BLAST of mRNA_H-paniculata_contig20746.5387.1 vs. uniprot
Match: A0A4S4E420_CAMSI (Uncharacterized protein n=1 Tax=Camellia sinensis var. sinensis TaxID=542762 RepID=A0A4S4E420_CAMSI)

HSP 1 Score: 54.7 bits (130), Expect = 3.320e-7
Identity = 34/58 (58.62%), Postives = 38/58 (65.52%), Query Frame = 1
Query:    4 TALELGAGTGVCGLTAAIAIGCPVLLTDRRCDVLENLRANVVLNGLEDRVQVVRLAWG 177
            T LELGAGTG+ GLTAA      V+LTD    +L  LR NV  NGL DRV+V RL WG
Sbjct:  162 TVLELGAGTGLPGLTAAALGASRVILTDVE-PLLPVLRKNVEANGLGDRVEVSRLVWG 218          
BLAST of mRNA_H-paniculata_contig20746.5387.1 vs. uniprot
Match: UPI001CC6DDCD (protein N-lysine methyltransferase METTL21A-like n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC6DDCD)

HSP 1 Score: 53.9 bits (128), Expect = 4.510e-7
Identity = 33/58 (56.90%), Postives = 38/58 (65.52%), Query Frame = 1
Query:    4 TALELGAGTGVCGLTAAIAIGCPVLLTDRRCDVLENLRANVVLNGLEDRVQVVRLAWG 177
            T +ELGAGTG+ GLTAA+     V+LTD    +L  LR NV  N LEDRVQV  L WG
Sbjct:   60 TVVELGAGTGLPGLTAALLGANHVVLTDV-AQLLPGLRKNVEANALEDRVQVRELLWG 116          
BLAST of mRNA_H-paniculata_contig20746.5387.1 vs. uniprot
Match: A0A8K0N5Q5_COCNU (Uncharacterized protein n=1 Tax=Cocos nucifera TaxID=13894 RepID=A0A8K0N5Q5_COCNU)

HSP 1 Score: 53.5 bits (127), Expect = 5.390e-7
Identity = 32/58 (55.17%), Postives = 39/58 (67.24%), Query Frame = 1
Query:    4 TALELGAGTGVCGLTAAIAIGCPVLLTDRRCDVLENLRANVVLNGLEDRVQVVRLAWG 177
            T LELGAGTG+ GL AA+     V+LTD    +L  LRANV +NGLE +V+V  L WG
Sbjct:   60 TVLELGAGTGLPGLAAAVLGAARVVLTDVAL-LLPGLRANVEVNGLEGQVEVRELRWG 116          
BLAST of mRNA_H-paniculata_contig20746.5387.1 vs. uniprot
Match: A0A5J5A4X8_9ASTE (Uncharacterized protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5A4X8_9ASTE)

HSP 1 Score: 51.6 bits (122), Expect = 2.850e-6
Identity = 30/56 (53.57%), Postives = 38/56 (67.86%), Query Frame = 1
Query:   10 LELGAGTGVCGLTAAIAIGCPVLLTDRRCDVLENLRANVVLNGLEDRVQVVRLAWG 177
            LELGAGTG+ GLTAA+     V+LTD    ++  L+ NV  NGL DRV+V +L WG
Sbjct:   49 LELGAGTGLPGLTAALLGASRVILTDVE-QLVPCLKKNVEANGLGDRVEVTQLVWG 103          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20746.5387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKP4_ECTSI5.820e-1867.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KU26_9PHAE1.240e-1767.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CN38_9STRA2.320e-960.00Putative methyltransferase-domain-containing prote... [more]
A0A843UVG8_COLES3.590e-855.17Uncharacterized protein n=1 Tax=Colocasia esculent... [more]
UPI001FB0C3AB1.040e-755.17protein N-lysine methyltransferase METTL21A-like n... [more]
UPI00103616CD2.170e-758.62protein N-lysine methyltransferase METTL21A-like n... [more]
A0A4S4E420_CAMSI3.320e-758.62Uncharacterized protein n=1 Tax=Camellia sinensis ... [more]
UPI001CC6DDCD4.510e-756.90protein N-lysine methyltransferase METTL21A-like n... [more]
A0A8K0N5Q5_COCNU5.390e-755.17Uncharacterized protein n=1 Tax=Cocos nucifera Tax... [more]
A0A5J5A4X8_9ASTE2.850e-653.57Uncharacterized protein n=1 Tax=Nyssa sinensis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20746contigH-paniculata_contig20746:2268..2444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size177
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929541.3977752-CDS-H-paniculata_contig20746:2267..24441622929541.3977752-CDS-H-paniculata_contig20746:2267..2444Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20746 2268..2444 -
1691480905.5057669-CDS-H-paniculata_contig20746:2267..24441691480905.5057669-CDS-H-paniculata_contig20746:2267..2444Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20746 2268..2444 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20746.5387.1prot_H-paniculata_contig20746.5387.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20746 2268..2444 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20746.5387.1

>prot_H-paniculata_contig20746.5387.1 ID=prot_H-paniculata_contig20746.5387.1|Name=mRNA_H-paniculata_contig20746.5387.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp
ATALELGAGTGVCGLTAAIAIGCPVLLTDRRCDVLENLRANVVLNGLEDR
VQVVRLAWG
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mRNA from alignment at H-paniculata_contig20746:2268..2444-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20746.5387.1 ID=mRNA_H-paniculata_contig20746.5387.1|Name=mRNA_H-paniculata_contig20746.5387.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=177bp|location=Sequence derived from alignment at H-paniculata_contig20746:2268..2444- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTACGGCTCTTGAACTCGGTGCAGGTACCGGTGTCTGTGGCTTGACCGC GGCTATAGCTATCGGCTGTCCTGTTTTGCTCACCGACCGAAGATGCGATG TGCTTGAAAATCTAAGAGCAAATGTTGTCCTAAATGGACTCGAAGATAGG GTGCAGGTTGTCCGGCTCGCTTGGGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig20746:2268..2444-

>mRNA_H-paniculata_contig20746.5387.1 ID=mRNA_H-paniculata_contig20746.5387.1|Name=mRNA_H-paniculata_contig20746.5387.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at H-paniculata_contig20746:2268..2444- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTACGGCTCTTGAACTCGGTGCAGGTACCGGTGTCTGTGGCTTGACCGC
GGCTATAGCTATCGGCTGTCCTGTTTTGCTCACCGACCGAAGATGCGATG
TGCTTGAAAATCTAAGAGCAAATGTTGTCCTAAATGGACTCGAAGATAGG
GTGCAGGTTGTCCGGCTCGCTTGGGGTGCTACGGCTCTTGAACTCGGTGC
AGGTACCGGTGTCTGTGGCTTGACCGCGGCTATAGCTATCGGCTGTCCTG
TTTTGCTCACCGACCGAAGATGCGATGTGCTTGAAAATCTAAGAGCAAAT
GTTGTCCTAAATGGACTCGAAGATAGGGTGCAGGTTGTCCGGCTCGCTTG
GGGT
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