mRNA_H-paniculata_contig2074.5386.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2074.5386.1
Unique NamemRNA_H-paniculata_contig2074.5386.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2074.5386.1 vs. uniprot
Match: D8LHY1_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHY1_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 3.950e-34
Identity = 57/80 (71.25%), Postives = 65/80 (81.25%), Query Frame = 3 
Query:    3 LSYACVFRLSMEPSGGSPWEAKQMAAIRWLLEHGANVNHVDKAGYTPLAWACRSGVFPAVQALVEADADVMQRRPDLPGG 242
            LSY C F+LS+  +G   WE +Q+AAI+WLL  GAN NHVDKAGY  LAWACRSG+FPAV ALVEA ADVMQRRP+LPGG
Sbjct:   64 LSYTCAFKLSLSKNGDDSWERQQVAAIKWLLGQGANPNHVDKAGYXXLAWACRSGIFPAVVALVEAGADVMQRRPELPGG 143
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BLAST of mRNA_H-paniculata_contig2074.5386.1 vs. uniprot
Match: A0A6H5JDT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDT1_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 1.150e-25
Identity = 49/58 (84.48%), Postives = 53/58 (91.38%), Query Frame = 3 
Query:   69 QMAAIRWLLEHGANVNHVDKAGYTPLAWACRSGVFPAVQALVEADADVMQRRPDLPGG 242
            Q+AAI+WLL  GAN NHVDKAGYTPLAWACRSG+FPAV ALVEA ADVMQRRP+LPGG
Sbjct:  259 QVAAIKWLLGQGANPNHVDKAGYTPLAWACRSGLFPAVVALVEAGADVMQRRPELPGG 316
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BLAST of mRNA_H-paniculata_contig2074.5386.1 vs. uniprot
Match: UPI0018E26208 (myotrophin n=2 Tax=Cyprinodon TaxID=28741 RepID=UPI0018E26208)

HSP 1 Score: 51.2 bits (121), Expect = 2.500e-6
Identity = 27/67 (40.30%), Postives = 36/67 (53.73%), Query Frame = 3 
Query:   42 SGGSPWEAK----QMAAIRWLLEHGANVNHVDKAGYTPLAWACRSGVFPAVQALVEADADVMQRRPD 230
            SGG P        Q   I +LL  GA++N +DK G+TPL  AC    + A + L+E  AD  Q+ PD
Sbjct:   34 SGGKPIHVAADFGQSELIDYLLSKGADINALDKHGFTPLLLACFEDHYSAAKLLIEKGADKNQKAPD 100
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BLAST of mRNA_H-paniculata_contig2074.5386.1 vs. uniprot
Match: A0A3Q2C6S6_CYPVA (Myotrophin n=1 Tax=Cyprinodon variegatus TaxID=28743 RepID=A0A3Q2C6S6_CYPVA)

HSP 1 Score: 50.8 bits (120), Expect = 3.740e-6
Identity = 27/67 (40.30%), Postives = 35/67 (52.24%), Query Frame = 3 
Query:   42 SGGSPWEAK----QMAAIRWLLEHGANVNHVDKAGYTPLAWACRSGVFPAVQALVEADADVMQRRPD 230
            SGG P        Q   I +LL  GA +N +DK G+TPL  AC    + A + L+E  AD  Q+ PD
Sbjct:   37 SGGKPIHVAADFGQSELIDYLLSKGAEINALDKHGFTPLLLACFEDHYSAAKLLIEKGADKNQKAPD 103
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BLAST of mRNA_H-paniculata_contig2074.5386.1 vs. uniprot
Match: A0A3Q2PXA7_FUNHE (Ankyrin repeat domain-containing protein 53 n=2 Tax=Fundulus heteroclitus TaxID=8078 RepID=A0A3Q2PXA7_FUNHE)

HSP 1 Score: 52.0 bits (123), Expect = 7.680e-6
Identity = 23/47 (48.94%), Postives = 32/47 (68.09%), Query Frame = 3 
Query:   75 AAIRWLLEHGANVNHVDKAGYTPLAWACRSGVFPAVQALVEADADVM 215
            A +R+LLEHGANVN    +G TPL +A  +G+F   + LV A AD++
Sbjct:   97 ACLRYLLEHGANVNTTTDSGQTPLHFAVSNGLFDCSETLVMAGADIL 143
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BLAST of mRNA_H-paniculata_contig2074.5386.1 vs. uniprot
Match: A0A7S4MNR1_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MNR1_9EUKA)

HSP 1 Score: 51.2 bits (121), Expect = 1.510e-5
Identity = 24/51 (47.06%), Postives = 30/51 (58.82%), Query Frame = 3 
Query:   69 QMAAIRWLLEHGANVNHVDKAGYTPLAWACRSGVFPAVQALVE---ADADV 212
            Q   + +L++HG N N  DKAG TPL WACRSG    +  LV     +ADV
Sbjct:  387 QYDVLEYLIQHGGNPNFQDKAGCTPLHWACRSGSIDCIDILVNQFRVNADV 437
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BLAST of mRNA_H-paniculata_contig2074.5386.1 vs. uniprot
Match: A0A8J5X5J3_DIALT (Protein kinase domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X5J3_DIALT)

HSP 1 Score: 50.1 bits (118), Expect = 3.800e-5
Identity = 26/49 (53.06%), Postives = 30/49 (61.22%), Query Frame = 3 
Query:   78 AIRWLLEHGANVNHVDKAGYTPLAWACRSGVFPAVQALVEADADVMQRR 224
            AIRWLLEH A VN VD+ G+TPLA A R     AV  L + D  +M  R
Sbjct:  180 AIRWLLEHNAEVNAVDEFGHTPLADAARQQHRQAVVLLNQHDGGIMINR 228
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BLAST of mRNA_H-paniculata_contig2074.5386.1 vs. uniprot
Match: UPI0018EC6038 (ankyrin repeat domain-containing protein 53 n=2 Tax=Micropterus TaxID=27705 RepID=UPI0018EC6038)

HSP 1 Score: 49.3 bits (116), Expect = 6.880e-5
Identity = 22/49 (44.90%), Postives = 31/49 (63.27%), Query Frame = 3 
Query:   75 AAIRWLLEHGANVNHVDKAGYTPLAWACRSGVFPAVQALVEADADVMQR 221
            + +R+LLEHGANVN    +G TPL  A   G+    + LV+A ADV+ +
Sbjct:  104 SCLRYLLEHGANVNVATDSGSTPLHLAASEGLLDCTEILVQAGADVLAK 152
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BLAST of mRNA_H-paniculata_contig2074.5386.1 vs. uniprot
Match: A0A7S4A6M7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A6M7_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 7.080e-5
Identity = 27/72 (37.50%), Postives = 37/72 (51.39%), Query Frame = 3 
Query:    3 LSYACVFRLSMEPSGGSPWEAKQMAAIRWLLEHGANVNHVDKAGYTPLAWACRSGVFPAVQALVEADADVMQ 218
            L  AC+F  +       P     M   RWL++HGA+VN+VDK G+T L  A   G  P V  L++  A V +
Sbjct:  314 LGTACMFNCA------EPRRKTHMKFCRWLIDHGADVNNVDKGGHTALELASSWGNMPLVSMLMQNMARVRR 379
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BLAST of mRNA_H-paniculata_contig2074.5386.1 vs. uniprot
Match: A0A5J4U8R4_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4U8R4_9EUKA)

HSP 1 Score: 48.9 bits (115), Expect = 7.850e-5
Identity = 20/41 (48.78%), Postives = 28/41 (68.29%), Query Frame = 3 
Query:   87 WLLEHGANVNHVDKAGYTPLAWACRSGVFPAVQALVEADAD 209
            +LLE GA VNH+D+ G+TPL WA  +G     + L++A AD
Sbjct:    1 YLLEQGAEVNHIDELGWTPLHWAAFAGKLDTCRILIKAGAD 41
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2074.5386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D8LHY1_ECTSI3.950e-3471.25Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A0A6H5JDT1_9PHAE1.150e-2584.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0018E262082.500e-640.30myotrophin n=2 Tax=Cyprinodon TaxID=28741 RepID=UP... [more]
A0A3Q2C6S6_CYPVA3.740e-640.30Myotrophin n=1 Tax=Cyprinodon variegatus TaxID=287... [more]
A0A3Q2PXA7_FUNHE7.680e-648.94Ankyrin repeat domain-containing protein 53 n=2 Ta... [more]
A0A7S4MNR1_9EUKA1.510e-547.06Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A8J5X5J3_DIALT3.800e-553.06Protein kinase domain-containing protein n=2 Tax=D... [more]
UPI0018EC60386.880e-544.90ankyrin repeat domain-containing protein 53 n=2 Ta... [more]
A0A7S4A6M7_9STRA7.080e-537.50Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A5J4U8R4_9EUKA7.850e-548.78Uncharacterized protein (Fragment) n=1 Tax=Streblo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2074contigH-paniculata_contig2074:6632..9297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.7
Seed ortholog evalue1.4e-22
Seed eggNOG ortholog2880.D8LHY1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size248
Cds size216
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2074.5386.1prot_H-paniculata_contig2074.5386.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2074 6664..9297 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929541.3336365-UTR-H-paniculata_contig2074:6631..66631622929541.3336365-UTR-H-paniculata_contig2074:6631..6663Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2074 6632..6663 +
1691480905.4631174-UTR-H-paniculata_contig2074:6631..66631691480905.4631174-UTR-H-paniculata_contig2074:6631..6663Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2074 6632..6663 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929541.3466876-CDS-H-paniculata_contig2074:6663..67021622929541.3466876-CDS-H-paniculata_contig2074:6663..6702Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2074 6664..6702 +
1691480905.4837441-CDS-H-paniculata_contig2074:6663..67021691480905.4837441-CDS-H-paniculata_contig2074:6663..6702Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2074 6664..6702 +
1622929541.3606453-CDS-H-paniculata_contig2074:9120..92971622929541.3606453-CDS-H-paniculata_contig2074:9120..9297Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2074 9121..9297 +
1691480905.495954-CDS-H-paniculata_contig2074:9120..92971691480905.495954-CDS-H-paniculata_contig2074:9120..9297Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2074 9121..9297 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2074.5386.1

>prot_H-paniculata_contig2074.5386.1 ID=prot_H-paniculata_contig2074.5386.1|Name=mRNA_H-paniculata_contig2074.5386.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
MEPSGGSPWEAKQMAAIRWLLEHGANVNHVDKAGYTPLAWACRSGVFPAV
QALVEADADVMQRRPDLPGGG*
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mRNA from alignment at H-paniculata_contig2074:6632..9297+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2074.5386.1 ID=mRNA_H-paniculata_contig2074.5386.1|Name=mRNA_H-paniculata_contig2074.5386.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2666bp|location=Sequence derived from alignment at H-paniculata_contig2074:6632..9297+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTTGTCCTACGCGTGTGTGTTTCGCCTGTCGATGGAACCCAGTGGCGGG
AGTCCTTGGGAAGCGAAACAGGTGCACAGGGATGAAGCTAGGAGGCCCGC
CCGAACCCATACATAGATACATGCCGACAGTGAGAAACTGGCTTCCAGTG
AAACGCATGATAAACTGGTTGGTAACGTCTAATGGTTGACACATCCCAGG
TTTCGTACGTGTTTCAGAATATGTGATATAACATATATTATTCAATTCTT
GGACATGTGAAAGCCAGAGTCGTCGGAGAAGTAGTAGCTCACGTAGGAGA
TTCCATTCGCACATATGCAAGACGTACGTGAAGGTACAAAATCCATCCAT
TAACGGTTTCTCAAGCATCAAAACGGGCTTCTGTTGGAGAGGCTCGTGGG
TCCCAACCACCAAACCCGGCGGATCTTGATGTACCAATACCGATATGGAC
TTGGACGTGGAGTTTCCAAGAGGAGCCTTGCTACGATCTTTGACACCCTG
AGGCCATTTTCAGTGGCGGCGAACATGAGAGAACGAACGTAGATGAGAAG
GCATGGGTTTGGTAGCCCCAGTAACAACGGCAATTGAAAATGAAGCAGCC
TTCGAATCCCATCTGTATTAGTATTAACGCGATACACGAACGTTGGAGAA
TTCGAGAAATTTCAGGTTTTGAAGTCCTCAAAAAAGAGCCAAAATGTTGT
CCAAAGTTAACGCCTCACTTGAATGAACGCCTTTCAAAGTGTCGGTCATC
ACCGTGCATCCTCACGCGTTCTTGCTAAGTGGCGATCTGCCACAAGAAAG
CGTCGTGATTTCGAAGAAGCGCTCAGCTGCAGTTCACGGATTCGGTTCGT
GTATTCCTCCGGAAAATTGATCCGATCATTTTTGTTCAGGTGTGACCTCG
AAGATCACTTTGCTTATCGAGAGGTGTGATGCAATAGAATGTGTCTTCGT
CCTCATCGGATCGTGCACAGTACCGTATGGGTGTTCTACTTGCTTTACGA
TGAAATCGAGGATGTAACAGAGTAGGTCACAGGGGGGATTGGAATACCAT
GAGATGCGGGTAAATTTTTGATTGGTCACCCCTCTCGGCGAATTAGAATA
CTCAAAGCATTCGCGAAGAACATTCTGAAGCGCTCGCCGGAAGAATCAAC
TTGTGCGGGCATATATAATTCACAGAAAAATGAAGTGTTGAGTCACACTT
GTGTGTTTATTCGTTTTTCCTTGTTCGCTATTCGGAGCGCCCAACATGAA
ATGATATTAGTCAAATGTTTGATAGCGTTTTGCTAGCGGCATAATTATGT
TGAGAGGACTTGGAACGCACGAGTTCTCGTCCAGCACACCCTCATCCTGT
GAAAGCGGACCACCATGAATGCACCACCCACCGCAATGTTTATCAAGACA
AACCCTTGCGTGGAACGGGTGTGGAAGGAAATGAAGGCTCATGGATTACA
TTTGGGTGTGTGCAAGACACAGTGGATCATTCTACAGGATGTATCACAAC
GATATGCTTGTACCCCCATTAACAAGAACGGTGGGGGCCTGCCCCTGAGC
GCGAGGTACAAGAAAGTGGTGCAGCTATACAAGAATTTTGCCGTTGACAG
CTTCTTCCGCATGGGTGGAGGAAACCCCCGAGCTGGATCTCCCTGGGTGG
GCGACTCACAGTCTATTCGGAAAGATAGCAAGTGCCGCTGCATCCATGCG
TCGACTGCGTCTCTCGTCTTCATCTTGAATATCGACGGCTGCCACTACAG
CAGCGAGCGCCGCCGACATGAACGATTGCATTTCCTGCAGATCTTCCAGA
TGGTGGCTGGATTCACACCTGGGATTGTGTACGTACTTCGTACTGGCATT
TGTGAACAGCGCGGGTGTTTTACTGTGGGCTATGAAACAGCATCAAGGAG
AGCACGCCTATCTATCTCGTCGAAGTCCCATTTTTATGATTTAGAGGACG
TCTAATCGTTCAGTCCAAAAATTTGCGAATTTGAATACTCCTCGATCATA
AAATTTGTGCCAAAAAGTTTTTTTATTTTTACGCCATAAAATGAGGGATA
CAAAAATCTACAGTAAAAAAATGGATATGTATTTTTTTTGTTGGAGTTTT
TTGACACCGTAAGAGATATCCTTTTTACACCCCAGAGTGTTAAACCCTCT
GTATGCACCACTCGGAAGCGTACCGTAAGAGATGGCCTAAGAGATGGCTT
TAGTGTTGCTTTTTTTGTCAAGTGTTGCCCACCGAGGGTTAATAAAATGC
AGCTTGAATTGTGCGTCGATACTAATTCCCATAACGATGCTCCCCTATGC
TAACTCTCATACAATTTTTCCGACACAATGTTCCCCATAGAATGATCCCC
CATACTAATCTCTATACTATACGCCCCAAAGGGATTTAGGGCGGGGTTTC
GTCCAATAAATCCCCCCTAATATTGAATAGGGCGTTGACTGAAATTCGGT
CGTTGCTGCTACCTGCTCGTTTCCCCAAACCGAACGCAGATGGCAGCGAT
TAGATGGCTGCTGGAACATGGCGCTAACGTGAACCATGTGGACAAGGCCG
GGTATACCCCCTTGGCGTGGGCTTGTCGAAGCGGCGTTTTCCCTGCGGTA
CAGGCGCTCGTGGAGGCTGATGCTGACGTCATGCAACGGCGGCCGGATCT
ACCTGGTGGAGGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig2074:6632..9297+

>mRNA_H-paniculata_contig2074.5386.1 ID=mRNA_H-paniculata_contig2074.5386.1|Name=mRNA_H-paniculata_contig2074.5386.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig2074:6632..9297+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAACCCAGTGGCGGGAGTCCTTGGGAAGCGAAACAGATGGAACCCAG
TGGCGGGAGTCCTTGGGAAGCGAAACAGATGGCAGCGATTAGATGGCTGC
TGGAACATGGCGCTAACGTGAACCATGTGGACAAGGCCGGGTATACCCCC
TTGGCGTGGGCTTGTCGAAGCGGCGTTTTCCCTGCGGTACAGGCGCTCGT
GGAGGCTGATGCTGACGTCATGCAACGGCGGCCGGATCTACCTGGTGGAG
GGTAAATGGCAGCGATTAGATGGCTGCTGGAACATGGCGCTAACGTGAAC
CATGTGGACAAGGCCGGGTATACCCCCTTGGCGTGGGCTTGTCGAAGCGG
CGTTTTCCCTGCGGTACAGGCGCTCGTGGAGGCTGATGCTGACGTCATGC
AACGGCGGCCGGATCTACCTGGTGGAGGGTAA
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