mRNA_H-paniculata_contig20693.5375.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20693.5375.1
Unique NamemRNA_H-paniculata_contig20693.5375.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20693.5375.1 vs. uniprot
Match: A0A6H5JJC0_9PHAE (UBC core domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJC0_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 5.530e-21
Identity = 42/47 (89.36%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:    7 DGKVCLSLLGTWDGDRGENWNAATSTLLQVLVSVQSLILVPEPFFNE 147
            DGKVCLSLLGTWDGDRGE+WNA TSTLLQVLVS+QSLI VP+PFFNE
Sbjct:  761 DGKVCLSLLGTWDGDRGESWNAQTSTLLQVLVSIQSLIFVPQPFFNE 807
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BLAST of mRNA_H-paniculata_contig20693.5375.1 vs. uniprot
Match: D7FMN8_ECTSI (Survivin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMN8_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 5.530e-21
Identity = 42/47 (89.36%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:    7 DGKVCLSLLGTWDGDRGENWNAATSTLLQVLVSVQSLILVPEPFFNE 147
            DGKVCLSLLGTWDGDRGE+WNA TSTLLQVLVS+QSLI VP+PFFNE
Sbjct: 1131 DGKVCLSLLGTWDGDRGESWNAQTSTLLQVLVSIQSLIFVPQPFFNE 1177
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BLAST of mRNA_H-paniculata_contig20693.5375.1 vs. uniprot
Match: F4PU03_CAVFA (Ubiquitin-conjugating BIR-domain enzyme n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PU03_CAVFA)

HSP 1 Score: 86.7 bits (213), Expect = 1.510e-18
Identity = 40/46 (86.96%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:   10 GKVCLSLLGTWDGDRGENWNAATSTLLQVLVSVQSLILVPEPFFNE 147
            GKVCLSLLGTW G  GENWN  TSTLLQVLVS+QSLILVPEPFFNE
Sbjct:  657 GKVCLSLLGTWSGGEGENWNPNTSTLLQVLVSIQSLILVPEPFFNE 702
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BLAST of mRNA_H-paniculata_contig20693.5375.1 vs. uniprot
Match: A0A151ZFA9_9MYCE (Baculoviral IAP repeat-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZFA9_9MYCE)

HSP 1 Score: 86.7 bits (213), Expect = 1.510e-18
Identity = 40/46 (86.96%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:   10 GKVCLSLLGTWDGDRGENWNAATSTLLQVLVSVQSLILVPEPFFNE 147
            GKVCLSLLGTW G  GENWN  TSTLLQVLVS+QSLILVPEPFFNE
Sbjct:  714 GKVCLSLLGTWSGGAGENWNPQTSTLLQVLVSIQSLILVPEPFFNE 759
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BLAST of mRNA_H-paniculata_contig20693.5375.1 vs. uniprot
Match: D3B813_POLPP (Ubiquitin-conjugating BIR-domain enzyme apollon n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B813_POLPP)

HSP 1 Score: 86.7 bits (213), Expect = 1.510e-18
Identity = 40/47 (85.11%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    7 DGKVCLSLLGTWDGDRGENWNAATSTLLQVLVSVQSLILVPEPFFNE 147
            +GKVCLSLLGTW G  GENWN  TSTLLQVLVS+QSLILVPEPFFNE
Sbjct:  692 NGKVCLSLLGTWSGGAGENWNPNTSTLLQVLVSIQSLILVPEPFFNE 738
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BLAST of mRNA_H-paniculata_contig20693.5375.1 vs. uniprot
Match: UPI000644D36A (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644D36A)

HSP 1 Score: 86.3 bits (212), Expect = 2.060e-18
Identity = 40/47 (85.11%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    7 DGKVCLSLLGTWDGDRGENWNAATSTLLQVLVSVQSLILVPEPFFNE 147
            +GKVCLSLLGTW G  GE WNA TSTLLQVLVS+QSLILVPEPFFNE
Sbjct:  695 NGKVCLSLLGTWSGGAGETWNANTSTLLQVLVSIQSLILVPEPFFNE 741
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BLAST of mRNA_H-paniculata_contig20693.5375.1 vs. uniprot
Match: UPI00148AB298 (baculoviral IAP repeat-containing protein 6 isoform X1 n=2 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148AB298)

HSP 1 Score: 85.9 bits (211), Expect = 2.810e-18
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:   10 GKVCLSLLGTWDGDRGENWNAATSTLLQVLVSVQSLILVPEPFFNE 147
            GKVCLSLLGTW+G RGE WN  TSTLLQVLVS+QSLILVP+P+FNE
Sbjct:  803 GKVCLSLLGTWEGQRGEQWNVKTSTLLQVLVSIQSLILVPDPYFNE 848
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BLAST of mRNA_H-paniculata_contig20693.5375.1 vs. uniprot
Match: K1Q150_CRAGI (Origin recognition complex subunit 1 n=1 Tax=Crassostrea gigas TaxID=29159 RepID=K1Q150_CRAGI)

HSP 1 Score: 85.9 bits (211), Expect = 2.810e-18
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:   10 GKVCLSLLGTWDGDRGENWNAATSTLLQVLVSVQSLILVPEPFFNE 147
            GKVCLSLLGTW+G RGE WN  TSTLLQVLVS+QSLILVP+P+FNE
Sbjct:  456 GKVCLSLLGTWEGQRGEQWNVKTSTLLQVLVSIQSLILVPDPYFNE 501
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BLAST of mRNA_H-paniculata_contig20693.5375.1 vs. uniprot
Match: A0A7S3T9Y1_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3T9Y1_EMIHU)

HSP 1 Score: 84.3 bits (207), Expect = 3.540e-18
Identity = 38/46 (82.61%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:   10 GKVCLSLLGTWDGDRGENWNAATSTLLQVLVSVQSLILVPEPFFNE 147
            GKVCLSLLGTW GD GE+W+A TSTLLQVL+SVQ+LILVP+PFFNE
Sbjct:  169 GKVCLSLLGTWQGDAGESWHAKTSTLLQVLMSVQALILVPDPFFNE 214
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BLAST of mRNA_H-paniculata_contig20693.5375.1 vs. uniprot
Match: R7VKA5_CAPTE (UBC core domain-containing protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7VKA5_CAPTE)

HSP 1 Score: 85.5 bits (210), Expect = 3.840e-18
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:   10 GKVCLSLLGTWDGDRGENWNAATSTLLQVLVSVQSLILVPEPFFNE 147
            GKVCLSLLGTW+G +GE WN  TSTLLQVLVS+QSLILVPEP+FNE
Sbjct:  812 GKVCLSLLGTWEGQQGEQWNETTSTLLQVLVSIQSLILVPEPYFNE 857
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20693.5375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJC0_9PHAE5.530e-2189.36UBC core domain-containing protein n=1 Tax=Ectocar... [more]
D7FMN8_ECTSI5.530e-2189.36Survivin n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
F4PU03_CAVFA1.510e-1886.96Ubiquitin-conjugating BIR-domain enzyme n=1 Tax=Ca... [more]
A0A151ZFA9_9MYCE1.510e-1886.96Baculoviral IAP repeat-containing protein n=1 Tax=... [more]
D3B813_POLPP1.510e-1885.11Ubiquitin-conjugating BIR-domain enzyme apollon n=... [more]
UPI000644D36A2.060e-1885.11hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
UPI00148AB2982.810e-1882.61baculoviral IAP repeat-containing protein 6 isofor... [more]
K1Q150_CRAGI2.810e-1882.61Origin recognition complex subunit 1 n=1 Tax=Crass... [more]
A0A7S3T9Y1_EMIHU3.540e-1882.61Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
R7VKA5_CAPTE3.840e-1882.61UBC core domain-containing protein n=1 Tax=Capitel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20693contigH-paniculata_contig20693:3163..3321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.5
Seed ortholog evalue7.9e-18
Seed eggNOG ortholog2880.D7FMN8
KEGG koko:K10582,ko:K10586
KEGG Pathwayko04120,ko04214,ko04215,map04120,map04214,map04215
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0895@2759,KOG0897@1,KOG0897@2759
EC2.3.2.23
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons1
Model size159
Cds size159
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929540.3718524-CDS-H-paniculata_contig20693:3162..33211622929540.3718524-CDS-H-paniculata_contig20693:3162..3321Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20693 3163..3321 -
1691480905.0629451-CDS-H-paniculata_contig20693:3162..33211691480905.0629451-CDS-H-paniculata_contig20693:3162..3321Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20693 3163..3321 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20693.5375.1prot_H-paniculata_contig20693.5375.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20693 3163..3321 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20693.5375.1

>prot_H-paniculata_contig20693.5375.1 ID=prot_H-paniculata_contig20693.5375.1|Name=mRNA_H-paniculata_contig20693.5375.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp
MTDGKVCLSLLGTWDGDRGENWNAATSTLLQVLVSVQSLILVPEPFFNEV
TD*
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mRNA from alignment at H-paniculata_contig20693:3163..3321-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20693.5375.1 ID=mRNA_H-paniculata_contig20693.5375.1|Name=mRNA_H-paniculata_contig20693.5375.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at H-paniculata_contig20693:3163..3321- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACAGATGGCAAAGTGTGCCTCTCGCTGCTGGGTACCTGGGATGGAGA
CCGAGGCGAAAATTGGAATGCTGCAACATCTACCCTGCTGCAAGTCTTGG
TATCCGTTCAGTCGCTTATTCTAGTGCCTGAGCCGTTTTTCAACGAGGTG
ACGGATTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig20693:3163..3321-

>mRNA_H-paniculata_contig20693.5375.1 ID=mRNA_H-paniculata_contig20693.5375.1|Name=mRNA_H-paniculata_contig20693.5375.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig20693:3163..3321- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACAGATGGCAAAGTGTGCCTCTCGCTGCTGGGTACCTGGGATGGAGA
CCGAGGCGAAAATTGGAATGCTGCAACATCTACCCTGCTGCAAGTCTTGG
TATCCGTTCAGTCGCTTATTCTAGTGCCTGAGCCGTTTTTCAACGAGGTG
ACGGATTAAATGACAGATGGCAAAGTGTGCCTCTCGCTGCTGGGTACCTG
GGATGGAGACCGAGGCGAAAATTGGAATGCTGCAACATCTACCCTGCTGC
AAGTCTTGGTATCCGTTCAGTCGCTTATTCTAGTGCCTGAGCCGTTTTTC
AACGAGGTGACGGATTAA
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